Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 4.7e-59 231.1 125 100.0
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 9.1e-55 216.9 123 95.1
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 1.7e-48 196.1 123 83.7
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 3.8e-45 184.9 123 82.9
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 7.7e-38 160.6 113 77.9
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 6.8e-34 147.5 116 72.4
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 1.2e-33 146.7 123 70.7
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 2.6e-33 145.6 113 70.8
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 3.4e-33 145.2 113 71.7
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 4.4e-33 144.8 120 70.0
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 9.8e-33 143.7 118 68.6
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 4.9e-32 141.4 113 69.0
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 4.9e-32 141.4 112 72.3
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 3.1e-31 138.7 113 69.0
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 5.4e-31 137.9 110 70.0
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 7.0e-31 137.5 123 68.3
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 9.2e-31 137.1 116 70.7
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 1.2e-30 136.7 116 69.0
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 2.0e-30 136.0 107 72.0
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 3.5e-30 135.2 123 68.3
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 4.5e-30 134.8 110 69.1
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 5.9e-30 134.4 113 71.7
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 7.8e-30 134.0 120 65.8
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 1.3e-29 133.3 120 66.7
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 1.7e-29 132.9 119 66.4
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.7e-29 132.9 113 66.4
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 2.3e-29 132.5 112 70.5
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 2.3e-29 132.5 113 66.4
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.9e-29 132.1 114 68.4
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 2.9e-29 132.1 122 66.4
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 6.6e-29 131.0 110 68.2
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 8.6e-29 130.6 124 62.9
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 8.6e-29 130.6 116 65.5
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.1e-28 130.2 119 64.7
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.1e-28 130.2 119 64.7
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 1.9e-28 129.4 113 66.4
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 1.9e-28 129.4 124 66.1
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.9e-28 129.4 122 61.5
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 2.5e-28 129.0 124 64.5
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 2.5e-28 129.0 109 67.0
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.5e-28 129.0 109 67.0
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 2.5e-28 129.0 124 63.7
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 4.3e-28 128.3 118 64.4
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 4.3e-28 128.3 123 63.4
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 5.6e-28 127.9 113 65.5
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 5.6e-28 127.9 113 65.5
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 7.3e-28 127.5 113 65.5
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 9.5e-28 127.1 109 66.1
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 9.5e-28 127.1 120 63.3
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 9.5e-28 127.1 110 67.3
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 1.2e-27 126.7 121 66.1
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 2.1e-27 125.9 120 65.0
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 2.8e-27 125.6 113 68.1
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.8e-27 125.6 115 64.3
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.6e-27 125.2 111 67.6
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.6e-27 125.2 111 67.6
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 3.6e-27 125.2 121 64.5
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 3.6e-27 125.2 109 66.1
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 4.7e-27 124.8 115 65.2
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 4.7e-27 124.8 111 67.6
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.7e-27 124.8 113 61.9
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 8.0e-27 124.0 121 61.2
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.4e-26 123.2 125 64.0
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 1.4e-26 123.2 118 64.4
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 1.4e-26 123.2 118 64.4
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 2.3e-26 122.5 114 64.9
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 3.0e-26 122.1 115 65.2
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 4.0e-26 121.7 120 60.8
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 5.2e-26 121.3 114 64.9
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 8.9e-26 120.6 115 63.5
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 1.2e-25 120.2 123 63.4
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.2e-25 120.2 111 64.9
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 1.2e-25 120.2 114 64.0
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 1.5e-25 119.8 115 61.7
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 2.0e-25 119.4 113 62.8
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 3.4e-25 118.6 121 60.3
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 4.4e-25 118.2 114 64.0
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 5.8e-25 117.9 116 62.9
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 7.5e-25 117.5 114 64.0
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 3.7e-24 115.2 121 61.2
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 1.9e-23 112.8 110 62.7
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 1.9e-23 112.8 111 61.3
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 4.1e-23 111.7 113 61.1
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 4.1e-23 111.7 119 59.7
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 7.0e-23 110.9 117 59.0
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 2.0e-22 109.4 110 59.1
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 2.7e-22 109.0 113 57.5
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 2.7e-22 109.0 113 55.8
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 3.5e-22 108.6 113 58.4
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 4.6e-22 108.2 114 60.5
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 6.0e-22 107.8 113 58.4
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 1.0e-21 107.1 118 57.6
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 1.3e-21 106.7 117 59.0
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 1.3e-21 106.7 117 59.0
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 1.3e-21 106.7 117 59.0
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 1.7e-21 106.3 114 58.8
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 1.7e-21 106.3 114 58.8
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 2.3e-21 105.9 111 57.7
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 6.6e-21 104.4 114 59.6
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 6.6e-21 104.4 114 59.6
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 6.6e-21 104.4 114 59.6
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 8.6e-21 104.0 118 56.8
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 1.1e-20 103.6 114 57.9
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 1.1e-20 103.6 111 57.7
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 4.3e-20 101.7 114 57.9
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 5.6e-20 101.3 148 48.6
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 2.3e-18 95.9 110 54.5
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 3.1e-18 95.5 110 53.6
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 4.0e-18 95.1 113 53.1
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 1.2e-17 93.6 103 54.4
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 1.5e-17 93.2 112 52.7
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.6e-17 92.4 109 52.3
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 4.4e-17 91.7 109 52.3
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 4.4e-17 91.7 104 54.8
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 9.8e-17 90.5 117 53.8
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 1.3e-16 90.1 113 53.1
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 1.7e-16 89.7 91 59.3
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 1.4e-15 86.7 113 49.6
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 3.2e-15 85.5 88 58.0
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 9.2e-15 84.0 88 58.0
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 2.1e-14 82.8 115 49.6
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 2.7e-14 82.4 82 61.0
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 4.6e-14 81.6 117 49.6
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 4.6e-14 81.6 128 49.2
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 6.0e-14 81.3 112 47.3
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.0e-13 80.5 86 54.7
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.0e-13 80.5 82 61.0
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.0e-13 80.5 82 59.8
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.0e-13 80.5 72 63.9
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.0e-13 80.5 72 63.9
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 1.0e-13 80.5 88 58.0
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 1.3e-13 80.1 103 53.4
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 6.6e-13 77.8 126 46.0
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 1.5e-12 76.6 98 53.1
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 2.5e-12 75.9 124 47.6
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 4.3e-12 75.1 72 56.9
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 4.7e-11 71.6 117 47.9
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 6.2e-11 71.2 73 56.2
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.8e-10 69.7 85 56.5
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 6.8e-10 67.8 62 64.5
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.5e-09 66.6 43 79.1
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 3.4e-09 65.5 111 39.6
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 9.9e-09 63.9 76 57.9
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 2.9e-08 62.4 189 32.3
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 1.6e-06 56.6 113 39.8
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 1.6e-06 56.6 36 77.8
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 6.0e-06 54.7 38 78.9


User provided reference genes

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