Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 0.0e+00 1150.6 583 100.0
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.5e-306 1055.4 569 94.4
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.6e-287 992.3 569 87.9
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 2.6e-285 984.9 569 87.2
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 8.0e-279 963.4 569 83.7
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 6.6e-273 943.7 569 83.1
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 6.1e-271 937.2 562 83.5
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 4.4e-269 931.0 570 82.3
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 9.8e-269 929.9 563 82.9
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 1.1e-267 926.4 560 83.2
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 5.4e-267 924.1 569 81.4
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.2e-266 922.9 568 81.3
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 1.6e-266 922.5 637 74.9
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 2.0e-266 922.2 569 80.5
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 2.3e-265 918.7 569 80.8
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 2.5e-264 915.2 569 80.5
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 4.3e-264 914.4 563 81.2
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 1.1e-262 909.8 561 81.5
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 2.3e-262 908.7 568 79.8
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 4.0e-262 907.9 566 79.7
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 5.2e-262 907.5 569 79.4
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 1.2e-261 906.4 569 79.4
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.5e-261 906.0 569 79.6
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 2.0e-261 905.6 568 79.6
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.4e-261 904.8 569 79.4
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 7.5e-261 903.7 569 79.8
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.1e-259 899.8 569 79.1
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.2e-259 898.3 569 79.1
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 4.1e-259 897.9 569 79.6
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 7.1e-259 897.1 561 79.9
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 9.2e-259 896.7 569 78.9
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.2e-258 896.3 561 79.9
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 1.2e-258 896.3 570 77.9
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.2e-258 896.3 569 78.9
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 2.1e-258 895.6 566 78.4
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 2.1e-258 895.6 569 78.9
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 2.7e-258 895.2 566 79.0
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 7.8e-258 893.6 567 79.4
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 1.3e-257 892.9 579 77.9
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 1.7e-257 892.5 566 79.9
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.7e-257 892.5 565 79.1
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.0e-257 891.7 567 79.2
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 6.6e-257 890.6 564 79.3
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 1.1e-256 889.8 566 79.7
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 3.3e-256 888.3 571 77.4
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 5.6e-256 887.5 569 78.4
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 1.6e-255 885.9 553 79.4
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 4.7e-255 884.4 569 78.2
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 6.2e-255 884.0 579 77.4
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.8e-254 882.5 579 77.2
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 5.2e-254 880.9 556 79.9
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.5e-253 879.4 569 77.7
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 3.7e-252 874.8 566 77.9
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 6.0e-250 867.5 570 77.0
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 7.8e-250 867.1 553 77.9
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 2.3e-249 865.5 561 77.5
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 1.6e-247 859.4 608 73.0
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 2.4e-246 855.5 569 76.4
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 2.6e-245 852.0 568 75.0
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 1.7e-244 849.4 569 77.0
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 1.7e-244 849.4 561 76.5
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 4.9e-244 847.8 569 73.6
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 6.4e-244 847.4 569 75.0
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 6.4e-244 847.4 561 76.3
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 1.1e-243 846.7 569 75.0
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.4e-243 846.3 564 76.1
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 4.6e-242 841.3 562 74.9
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 1.3e-241 839.7 559 75.3
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 3.0e-241 838.6 567 73.9
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 3.0e-241 838.6 567 74.6
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 1.1e-240 836.6 571 74.1
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 5.6e-240 834.3 567 74.1
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 3.6e-239 831.6 567 73.4
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 4.8e-239 831.2 556 73.7
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 6.2e-239 830.9 567 73.5
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 8.1e-239 830.5 569 74.3
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 8.1e-239 830.5 568 72.7
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 1.4e-238 829.7 569 72.8
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.4e-238 828.9 570 73.2
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 4.0e-238 828.2 574 72.3
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 5.3e-238 827.8 564 73.9
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 9.0e-238 827.0 563 73.5
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 1.5e-237 826.2 573 72.6
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 1.5e-237 826.2 573 72.6
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 1.5e-237 826.2 579 73.7
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 9.9e-237 823.5 573 72.3
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 9.9e-237 823.5 570 72.5
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 2.2e-236 822.4 567 72.8
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 2.2e-236 822.4 529 77.5
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.9e-236 822.0 560 75.9
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 1.9e-235 819.3 567 72.5
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.2e-234 816.6 560 75.4
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 1.6e-234 816.2 563 74.1
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 2.1e-234 815.8 570 70.4
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 3.5e-234 815.1 572 73.1
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.3e-233 812.4 611 67.9
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 2.5e-232 808.9 552 73.9
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 7.3e-232 807.4 571 72.3
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 6.2e-231 804.3 567 71.8
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.1e-230 803.5 571 72.2
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 5.3e-230 801.2 553 71.8
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 9.0e-230 800.4 575 72.2
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.9e-228 794.7 567 72.1
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 8.4e-228 793.9 554 72.2
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 8.4e-228 793.9 572 71.2
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.9e-227 792.7 627 67.3
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 3.2e-227 792.0 566 72.3
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 9.3e-227 790.4 542 73.2
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.8e-225 786.2 603 68.3
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 1.5e-221 773.1 563 70.2
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 4.5e-221 771.5 636 63.8
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 8.4e-220 767.3 476 79.2
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 8.4e-220 767.3 569 66.8
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 7.1e-219 764.2 561 68.4
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 1.6e-218 763.1 559 68.5
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 1.0e-209 733.8 561 64.9
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.3e-209 733.4 585 64.4
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 4.3e-208 728.4 458 80.1
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 5.0e-204 714.9 478 73.8
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 8.8e-201 704.1 569 64.7
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.4e-195 686.8 483 71.6
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 1.0e-193 680.6 514 64.0
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 7.4e-192 674.5 569 59.2
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 1.3e-180 637.1 553 58.0
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 3.0e-177 625.9 414 74.6
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 6.8e-177 624.8 564 55.5
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 3.8e-172 609.0 368 81.5
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 5.2e-169 598.6 403 73.2
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 1.2e-168 597.4 403 73.0
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 1.3e-167 594.0 403 72.7
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 2.9e-159 566.2 367 78.5
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 4.4e-144 515.8 558 48.9
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 1.7e-132 477.2 539 45.6
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 2.4e-129 466.8 338 70.4
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 2.7e-125 453.4 275 82.2
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 1.2e-117 427.9 336 66.7
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 6.7e-100 369.0 220 79.5
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.1e-83 315.1 195 75.9
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 4.4e-75 286.6 200 74.5
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 5.7e-67 259.6 196 69.9
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 2.0e-48 198.0 160 62.5
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 1.7e-47 194.9 155 66.5
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.3e-47 194.5 144 68.1
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 8.9e-44 182.6 117 74.4
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 2.0e-40 171.4 192 52.6
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 4.7e-29 133.7 94 75.5
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 8.1e-29 132.9 113 61.9
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 3.1e-28 131.0 83 79.5
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 1.9e-25 121.7 96 58.3
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 1.6e-24 118.6 109 57.8
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 1.0e-23 115.9 89 60.7
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.1e-20 104.4 117 47.9
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 1.0e-07 62.8 111 36.0
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 1.1e-06 59.3 63 52.4


User provided reference genes

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