Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 8.9e-217 757.3 547 100.0
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.0e-148 531.2 572 70.8
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.3e-103 381.3 548 61.1
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 3.9e-79 300.1 539 46.2
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 1.3e-77 295.0 515 51.5
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 5.5e-73 279.6 513 44.6
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 1.5e-70 271.6 390 42.3
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 2.5e-70 270.8 510 42.4
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 3.3e-70 270.4 386 49.2
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 1.6e-69 268.1 374 48.7
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 3.4e-67 260.4 390 46.9
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 7.6e-67 259.2 507 42.4
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 7.6e-67 259.2 507 42.0
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 6.5e-66 256.1 531 45.2
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.9e-65 254.6 535 42.6
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.1e-62 245.4 535 44.3
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 5.7e-62 243.0 535 44.1
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 9.1e-60 235.7 540 40.4
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 2.6e-59 234.2 543 37.8
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 1.7e-58 231.5 377 46.9
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.9e-58 230.7 428 46.3
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 3.2e-57 227.3 377 48.8
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 7.2e-57 226.1 553 37.1
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 2.1e-56 224.6 379 49.6
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 3.6e-56 223.8 395 47.1
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 6.1e-56 223.0 314 56.1
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 3.9e-55 220.3 458 40.0
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 1.7e-53 214.9 388 48.7
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 4.8e-53 213.4 380 50.5
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 6.3e-53 213.0 381 48.0
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 8.2e-53 212.6 533 37.3
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 8.2e-53 212.6 520 42.3
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 1.1e-52 212.2 370 44.1
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 1.1e-52 212.2 399 47.4
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 1.4e-52 211.8 509 42.0
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 1.4e-52 211.8 399 47.4
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 3.1e-52 210.7 372 45.7
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 3.1e-52 210.7 420 44.0
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 5.3e-52 209.9 329 59.0
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 3.4e-51 207.2 546 41.2
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 5.9e-51 206.5 402 45.5
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 1.0e-50 205.7 382 47.1
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 1.3e-50 205.3 521 41.3
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.3e-50 205.3 521 41.3
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 1.7e-50 204.9 306 54.2
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 2.9e-50 204.1 521 40.9
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.8e-50 203.8 290 56.2
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 3.8e-50 203.8 290 47.6
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 8.5e-50 202.6 357 47.6
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 8.5e-50 202.6 394 48.2
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 3.2e-49 200.7 372 49.7
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 3.2e-49 200.7 374 46.5
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 5.5e-49 199.9 372 46.0
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 1.6e-48 198.4 372 48.9
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 2.1e-48 198.0 395 44.3
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 3.6e-48 197.2 402 45.3
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 1.8e-47 194.9 432 38.2
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 1.8e-47 194.9 432 38.2
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 3.9e-47 193.7 573 40.5
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 1.5e-46 191.8 569 34.6
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 3.3e-46 190.7 443 37.7
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 7.4e-46 189.5 309 40.5
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 1.7e-45 188.3 584 38.4
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 1.7e-45 188.3 138 72.5
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 3.7e-45 187.2 444 36.9
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 3.7e-45 187.2 444 36.9
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 8.2e-45 186.0 176 66.5
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 8.2e-45 186.0 171 57.3
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 1.4e-44 185.3 399 41.4
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 1.8e-44 184.9 177 57.1
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 1.8e-44 184.9 419 39.1
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 4.1e-44 183.7 513 37.0
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 4.1e-44 183.7 392 40.6
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 7.0e-44 183.0 172 58.7
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 7.0e-44 183.0 417 37.6
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 9.1e-44 182.6 278 52.5
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 2.6e-43 181.0 527 37.8
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 3.5e-43 180.6 288 52.8
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 3.5e-43 180.6 385 40.8
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 5.9e-43 179.9 327 37.3
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 7.7e-43 179.5 181 51.9
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 2.2e-42 177.9 165 56.4
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 8.5e-42 176.0 428 36.4
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 3.2e-41 174.1 344 40.1
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 4.2e-41 173.7 384 34.9
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 1.8e-39 168.3 426 39.4
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 1.8e-39 168.3 600 32.2
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 6.7e-39 166.4 271 45.0
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 2.0e-38 164.9 385 42.6
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 2.6e-38 164.5 309 61.2
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 9.7e-38 162.5 387 36.4
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 2.8e-37 161.0 164 56.1
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 4.8e-37 160.2 391 36.8
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 6.3e-37 159.8 543 30.8
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 3.1e-36 157.5 426 36.6
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 3.1e-36 157.5 563 32.5
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 2.0e-35 154.8 367 46.3
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 2.0e-35 154.8 239 49.0
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 2.7e-35 154.5 478 32.0
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 2.2e-34 151.4 456 41.0
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 5.0e-34 150.2 252 40.9
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 6.5e-34 149.8 208 50.0
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 8.5e-34 149.4 309 36.2
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 2.5e-33 147.9 415 36.6
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 2.5e-33 147.9 122 51.6
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 3.2e-33 147.5 376 34.8
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 4.2e-33 147.1 282 41.5
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 5.5e-33 146.7 526 32.1
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 1.6e-32 145.2 125 67.2
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 2.1e-32 144.8 201 53.2
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 4.7e-32 143.7 337 47.8
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 2.3e-31 141.4 377 42.4
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 2.3e-31 141.4 664 30.3
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 5.2e-31 140.2 321 37.4
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 9.8e-30 136.0 321 36.1
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 9.8e-30 136.0 455 35.2
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 8.3e-29 132.9 356 43.3
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.8e-28 131.7 669 29.6
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 3.1e-28 131.0 169 47.3
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 4.1e-28 130.6 416 31.5
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 7.0e-28 129.8 390 41.0
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 9.1e-28 129.4 325 40.3
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 2.7e-27 127.9 250 43.2
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 2.7e-27 127.9 131 46.6
Prupe.6G179900 Prunus persica HOM05D003229 ORTHO05D003835 3.5e-27 127.5 333 37.5
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 4.5e-27 127.1 178 45.5
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 7.7e-27 126.3 170 44.7
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 3.8e-26 124.0 173 48.6
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 1.5e-25 122.1 478 34.1
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 4.2e-25 120.6 78 70.5
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.6e-24 118.6 138 53.6
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 2.1e-24 118.2 174 42.5
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 2.8e-24 117.9 189 42.3
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 3.6e-24 117.5 275 44.7
Thhalv10002168m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 8.0e-24 116.3 110 62.7
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.0e-23 115.9 188 37.8
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 1.4e-23 115.5 187 41.7
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 5.2e-23 113.6 248 34.7
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 8.9e-23 112.8 313 44.7
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 1.5e-22 112.1 392 41.1
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 3.4e-22 110.9 150 36.7
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 5.7e-22 110.2 139 48.2
AT3G43490 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 4.9e-21 107.1 77 59.7
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 8.3e-21 106.3 193 36.8
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 8.3e-21 106.3 478 28.9
vmacro04054 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 1.1e-20 105.9 323 31.9
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 2.4e-20 104.8 76 64.5
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 7.0e-20 103.2 167 37.7
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 1.7e-18 98.6 170 38.8
QL02p079790 Quercus lobata HOM05D003229 ORTHO05D003835 2.3e-18 98.2 208 36.1
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 3.8e-18 97.4 192 35.9
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 3.8e-18 97.4 192 35.9
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 3.8e-18 97.4 192 35.9
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 1.6e-16 92.0 129 36.4
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 3.6e-16 90.9 347 40.3
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 4.7e-16 90.5 514 33.9
Os11g0575200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 8.0e-16 89.7 137 46.7
BcaB01g02976 Brassica carinata HOM05D003229 ORTHO05D003835 1.8e-15 88.6 133 35.3
Psat5g107520 Pisum sativum HOM05D003229 ORTHO05D003835 2.3e-15 88.2 143 55.9
Mapoly0019s0115 Marchantia polymorpha HOM05D003229 ORTHO05D003835 3.0e-15 87.8 162 47.5
A03p27320 Brassica napus HOM05D003229 ORTHO05D003835 2.6e-14 84.7 133 35.3
BraA03t11943Z Brassica rapa HOM05D003229 ORTHO05D003835 2.6e-14 84.7 133 35.3
C03p32850 Brassica napus HOM05D003229 ORTHO05D003835 1.3e-13 82.4 281 27.0
BolC3t15620H Brassica oleracea HOM05D003229 ORTHO05D003835 2.2e-13 81.6 274 27.7
Sp4g01780 Schrenkiella parvula HOM05D003229 ORTHO05D003835 8.3e-13 79.7 87 42.5
Sopen01g025320 Solanum pennellii HOM05D000006 ORTHO05D000001 1.8e-12 78.6 127 44.9
AagrBONN_evm.TU.Sc2ySwM_368.3251 Anthoceros agrestis HOM05D003229 ORTHO05D003835 5.4e-12 77.0 75 46.7
EL10Ac5g11782 Beta vulgaris HOM05D003229 ORTHO05D003835 2.7e-11 74.7 131 34.4
Thhalv10023543m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 2.3e-10 71.6 381 29.7
PGSC0003DMG401021491 Solanum tuberosum HOM05D024157 ORTHO05D025896 1.5e-09 68.9 66 43.9
Hund15039 Selenicereus undatus HOM05D003229 ORTHO05D003835 3.3e-09 67.8 149 29.5
Dinv25091 Davidia involucrata HOM05D003229 ORTHO05D003835 9.5e-09 66.2 63 47.6
Thhalv10002930m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 9.5e-09 66.2 268 26.9
Solyc01g056750.1 Solanum lycopersicum HOM05D003229 ORTHO05D003835 9.5e-09 66.2 66 42.4
CSS0028132 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.2e-08 65.9 233 30.5
MBI05_g37661_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 1.6e-08 65.5 273 24.9
Haze_22516 Corylus avellana HOM05D003229 ORTHO05D017800 4.0e-07 60.8 131 31.3
Oeu047795.1 Olea europaea HOM05D003229 ORTHO05D003835 6.8e-07 60.1 52 44.2
Gohir.A04G056400 Gossypium hirsutum HOM05D003229 ORTHO05D003835 8.9e-07 59.7 124 26.6
AUR62036294 Chenopodium quinoa HOM05D003229 ORTHO05D003835 2.0e-06 58.5 157 24.2
Pp3c2_2680 Physcomitrium patens HOM05D003229 ORTHO05D003835 2.6e-06 58.2 37 56.8
Nitab4.5_0000117g0180 Nicotiana tabacum HOM05D003229 ORTHO05D003835 3.4e-06 57.8 90 36.7
Os11g0573200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 3.4e-06 57.8 253 38.3
AL7G45170 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 4.4e-06 57.4 44 47.7
AT5G36240 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 4.4e-06 57.4 75 52.0
Nitab4.5_0002595g0030 Nicotiana tabacum HOM05D003229 ORTHO05D003835 9.8e-06 56.2 44 52.3


User provided reference genes

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