Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0119800 Salix brachista HOM05D000621 ORTHO05D000421 6.4e-51 203.8 101 100.0
Potri.009G151200 Populus trichocarpa HOM05D000621 ORTHO05D000421 5.1e-32 141.0 77 87.0
Potri.009G155250 Populus trichocarpa HOM05D000621 ORTHO05D000421 7.2e-26 120.6 71 81.7
COL.COLO4_14820 Corchorus olitorius HOM05D000621 ORTHO05D000421 1.1e-18 96.7 80 63.8
Gohir.D13G014900 Gossypium hirsutum HOM05D000621 ORTHO05D000421 9.4e-18 93.6 80 57.5
Gohir.D13G015000 Gossypium hirsutum HOM05D000621 ORTHO05D000421 9.4e-18 93.6 80 57.5
Gorai.013G016200 Gossypium raimondii HOM05D000621 ORTHO05D000421 9.4e-18 93.6 80 57.5
Gorai.013G016500 Gossypium raimondii HOM05D000621 ORTHO05D000421 9.4e-18 93.6 80 57.5
Gohir.A13G013800 Gossypium hirsutum HOM05D000621 ORTHO05D000421 1.2e-17 93.2 80 56.2
Gohir.A13G013700 Gossypium hirsutum HOM05D000621 ORTHO05D000421 2.1e-17 92.4 80 57.5
COL.COLO4_15144 Corchorus olitorius HOM05D000621 ORTHO05D000421 7.9e-17 90.5 79 63.3
Cfa023334 Carpinus fangiana HOM05D000621 ORTHO05D000421 5.1e-16 87.8 73 52.1
Haze_13372 Corylus avellana HOM05D000621 ORTHO05D000421 8.8e-16 87.0 77 49.4
Duzib128G0876 Durio zibethinus HOM05D000621 ORTHO05D000421 1.5e-15 86.3 79 54.4
TWI63G0878 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 4.4e-15 84.7 77 53.2
CSS0007912 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 2.2e-14 82.4 81 49.4
Thecc.05G041100 Theobroma cacao HOM05D000621 ORTHO05D000421 4.8e-14 81.3 79 50.6
Lalb_Chr01g0005991 Lupinus albus HOM05D000621 ORTHO05D000421 1.8e-13 79.3 74 48.6
RcHm_v2.0_Chr6g0290541 Rosa chinensis HOM05D000621 ORTHO05D000421 1.8e-13 79.3 78 53.8
Dinv08798 Davidia involucrata HOM05D000621 ORTHO05D000421 4.1e-13 78.2 75 52.0
QL02p093988 Quercus lobata HOM05D000621 ORTHO05D000421 4.1e-13 78.2 73 54.8
Dinv14988 Davidia involucrata HOM05D000621 ORTHO05D000421 7.0e-13 77.4 84 47.6
Nn1g04409 Nelumbo nucifera HOM05D000621 ORTHO05D000421 7.0e-13 77.4 88 47.7
QL09p005700 Quercus lobata HOM05D000621 ORTHO05D000421 7.0e-13 77.4 78 50.0
Manes.09G128200 Manihot esculenta HOM05D000621 ORTHO05D000421 9.1e-13 77.0 77 49.4
Cfa007381 Carpinus fangiana HOM05D000621 ORTHO05D000421 1.6e-12 76.3 83 45.8
CAN.G456.2 Capsicum annuum HOM05D000621 ORTHO05D000421 2.0e-12 75.9 80 48.8
Lalb_Chr03g0029901 Lupinus albus HOM05D000621 ORTHO05D000421 3.5e-12 75.1 74 45.9
QL08p041697 Quercus lobata HOM05D000621 ORTHO05D000421 5.9e-12 74.3 78 50.0
TWI39G0827 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 5.9e-12 74.3 73 52.1
Haze_14728 Corylus avellana HOM05D000621 ORTHO05D000421 7.7e-12 73.9 83 44.6
MD04G1194400 Malus domestica HOM05D000621 ORTHO05D000421 7.7e-12 73.9 81 50.6
QL08p041642 Quercus lobata HOM05D000621 ORTHO05D000421 7.7e-12 73.9 78 51.3
QL08p041687 Quercus lobata HOM05D000621 ORTHO05D000421 7.7e-12 73.9 78 51.3
Aqoxy1G02065 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 1.7e-11 72.8 88 42.0
AL1G16350 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 1.7e-11 72.8 73 50.7
Ciclev10023940m.g Citrus clementina HOM05D000621 ORTHO05D000421 1.7e-11 72.8 82 48.8
Nitab4.5_0010988g0010 Nicotiana tabacum HOM05D000621 ORTHO05D000421 1.7e-11 72.8 80 47.5
THA.LOC104800847 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 2.2e-11 72.4 80 48.8
Carub.0001s0570 Capsella rubella HOM05D000621 ORTHO05D000421 5.0e-11 71.2 73 49.3
PSO500G0015 Papaver somniferum HOM05D000621 ORTHO05D000421 5.0e-11 71.2 76 48.7
Thecc.05G041200 Theobroma cacao HOM05D000621 ORTHO05D000421 5.0e-11 71.2 79 46.8
BcaC07g36806 Brassica carinata HOM05D000621 ORTHO05D000421 8.5e-11 70.5 83 43.4
C08p02500 Brassica napus HOM05D000621 ORTHO05D000421 8.5e-11 70.5 83 43.4
C08p02550 Brassica napus HOM05D000621 ORTHO05D000421 8.5e-11 70.5 83 43.4
CARHR005900 Cardamine hirsuta HOM05D000621 ORTHO05D000421 8.5e-11 70.5 77 45.5
Eucgr.J01526 Eucalyptus grandis HOM05D000621 ORTHO05D000421 8.5e-11 70.5 82 41.5
PSO675G4312 Papaver somniferum HOM05D000621 ORTHO05D000421 1.1e-10 70.1 76 47.4
SGA_v2.0_scaffold9G04815 Striga asiatica HOM05D000621 ORTHO05D000421 1.5e-10 69.7 75 50.7
Aa31LG1G7360 Aethionema arabicum HOM05D000621 ORTHO05D000421 1.9e-10 69.3 69 44.9
Glyma.06G277700 Glycine max HOM05D000621 ORTHO05D000421 2.5e-10 68.9 79 43.0
Lj8C149T18 Lonicera japonica HOM05D000621 ORTHO05D000421 2.5e-10 68.9 75 46.7
CARHR005960 Cardamine hirsuta HOM05D000621 ORTHO05D000421 3.2e-10 68.6 83 41.0
Cc05_g11190 Coffea canephora HOM05D000621 ORTHO05D000421 5.5e-10 67.8 73 43.8
Glyma.12G127600 Glycine max HOM05D000621 ORTHO05D000421 5.5e-10 67.8 79 43.0
Rhsim04G0025500 Rhododendron simsii HOM05D000621 ORTHO05D000421 1.2e-09 66.6 72 48.6
SalBow7G2455 Salvia bowleyana HOM05D000621 ORTHO05D000421 1.2e-09 66.6 81 45.7
Sp1g05130 Schrenkiella parvula HOM05D000621 ORTHO05D000421 1.2e-09 66.6 77 42.9
VMungo1127G0414 Vigna mungo HOM05D000621 ORTHO05D000421 1.6e-09 66.2 71 45.1
FAN14G2097 Fragaria x ananassa HOM05D000621 ORTHO05D000421 2.1e-09 65.9 75 45.3
VMungo0251G1194 Vigna mungo HOM05D000621 ORTHO05D000421 2.1e-09 65.9 86 43.0
Aqoxy6G00212 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 2.7e-09 65.5 81 40.7
CAN.G65.67 Capsicum annuum HOM05D000621 ORTHO05D000421 2.7e-09 65.5 88 44.3
Migut.M00703 Erythranthe guttata HOM05D000621 ORTHO05D000421 2.7e-09 65.5 83 43.4
FAN14G5271 Fragaria x ananassa HOM05D000621 ORTHO05D000421 2.7e-09 65.5 75 45.3
Lsat_1_v5_gn_2_72140 Lactuca sativa HOM05D000621 ORTHO05D000421 3.6e-09 65.1 77 42.9
Actinidia35214 Actinidia chinensis HOM05D000621 ORTHO05D000421 4.7e-09 64.7 67 49.3
CANSAT11G1282 Cannabis sativa HOM05D000621 ORTHO05D000421 6.1e-09 64.3 88 43.2
CAN.G438.86 Capsicum annuum HOM05D000621 ORTHO05D000421 6.1e-09 64.3 71 46.5
PGSC0003DMG400026947 Solanum tuberosum HOM05D000621 ORTHO05D000421 6.1e-09 64.3 89 43.8
AT1G06340 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 8.0e-09 63.9 78 43.6
Thhalv10009453m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 8.0e-09 63.9 86 40.7
FvH4_6g05270 Fragaria vesca HOM05D000621 ORTHO05D000421 8.0e-09 63.9 75 44.0
Phvul.011G130600 Phaseolus vulgaris HOM05D000621 ORTHO05D000421 8.0e-09 63.9 86 39.5
Phvul.011G130700 Phaseolus vulgaris HOM05D000621 ORTHO05D000421 8.0e-09 63.9 86 39.5
A09p67030 Brassica napus HOM05D000262 ORTHO05D000300 1.4e-08 63.2 83 39.8
BraA09t42037Z Brassica rapa HOM05D000262 ORTHO05D000300 1.8e-08 62.8 83 39.8
Nitab4.5_0000537g0080 Nicotiana tabacum HOM05D000621 ORTHO05D000421 1.8e-08 62.8 80 46.2
C08p51290 Brassica napus HOM05D000262 ORTHO05D000300 2.3e-08 62.4 83 42.2
BolC8t52655H Brassica oleracea HOM05D000262 ORTHO05D000300 2.3e-08 62.4 83 42.2
CAN.G65.66 Capsicum annuum HOM05D000621 ORTHO05D000421 2.3e-08 62.4 78 46.2
Peaxi162Scf00330g00124 Petunia axillaris HOM05D000621 ORTHO05D000421 2.3e-08 62.4 70 45.7
PGSC0003DMG400041590 Solanum tuberosum HOM05D000621 ORTHO05D000421 3.0e-08 62.0 69 44.9
PGSC0003DMG400044084 Solanum tuberosum HOM05D000621 ORTHO05D000421 3.0e-08 62.0 72 43.1
Lj3g0021474 Lotus japonicus HOM05D000621 ORTHO05D000421 4.0e-08 61.6 85 40.0
MD04G1199300 Malus domestica HOM05D000621 ORTHO05D000421 4.0e-08 61.6 60 55.0
Solyc03g120030.1 Solanum lycopersicum HOM05D000621 ORTHO05D000421 4.0e-08 61.6 72 40.3
PGSC0003DMG400005608 Solanum tuberosum HOM05D000621 ORTHO05D000421 5.2e-08 61.2 75 38.7
CAN.G65.95 Capsicum annuum HOM05D000621 ORTHO05D000421 6.7e-08 60.8 82 45.1
Peaxi162Scf00028g00043 Petunia axillaris HOM05D000621 ORTHO05D000421 6.7e-08 60.8 71 46.5
Nitab4.5_0001095g0120 Nicotiana tabacum HOM05D000621 ORTHO05D000421 8.8e-08 60.5 69 46.4
RcHm_v2.0_Chr3g0454011 Rosa chinensis HOM05D000621 ORTHO05D000421 8.8e-08 60.5 75 44.0
Sopen06g022050 Solanum pennellii HOM05D000621 ORTHO05D000421 8.8e-08 60.5 78 43.6
Sopen06g028510 Solanum pennellii HOM05D000621 ORTHO05D000421 8.8e-08 60.5 78 42.3
PGSC0003DMG400027055 Solanum tuberosum HOM05D000621 ORTHO05D000421 8.8e-08 60.5 78 42.3
Aa31LG1G7370 Aethionema arabicum HOM05D000621 ORTHO05D000421 1.1e-07 60.1 74 41.9
CiPaw.04G132400 Carya illinoinensis HOM05D000621 ORTHO05D000421 1.1e-07 60.1 79 41.8
Medtr1g019680 Medicago truncatula HOM05D000621 ORTHO05D000421 1.1e-07 60.1 72 40.3
Psat7g252320 Pisum sativum HOM05D000621 ORTHO05D000421 1.5e-07 59.7 89 38.2
Prupe.6G314500 Prunus persica HOM05D000621 ORTHO05D000421 1.5e-07 59.7 73 46.6
Sopen06g028480 Solanum pennellii HOM05D000621 ORTHO05D000421 1.5e-07 59.7 78 43.6
Nitab4.5_0012213g0030 Nicotiana tabacum HOM05D000621 ORTHO05D000421 2.0e-07 59.3 78 44.9
Nitab4.5_0000537g0090 Nicotiana tabacum HOM05D000621 ORTHO05D000421 2.6e-07 58.9 80 43.8
Phvul.002G204200 Phaseolus vulgaris HOM05D000621 ORTHO05D000421 2.6e-07 58.9 86 41.9
Atru.chr10.1669 Acer truncatum HOM05D000621 ORTHO05D000421 3.3e-07 58.5 67 35.8
Aqoxy1G02364 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 4.4e-07 58.2 81 40.7
Solyc06g072450.1 Solanum lycopersicum HOM05D000621 ORTHO05D000421 4.4e-07 58.2 72 41.7
Sopen03g038910 Solanum pennellii HOM05D000621 ORTHO05D000421 4.4e-07 58.2 72 40.3
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 4.4e-07 58.2 75 38.7
CSS0036864 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 5.7e-07 57.8 93 37.6
Psat7g165560 Pisum sativum HOM05D000621 ORTHO05D000421 5.7e-07 57.8 89 36.0
Peaxi162Scf00469g00022 Petunia axillaris HOM05D000621 ORTHO05D000421 7.5e-07 57.4 81 40.7
PGSC0003DMG400027057 Solanum tuberosum HOM05D000621 ORTHO05D000421 7.5e-07 57.4 78 41.0
Sopen06g028520 Solanum pennellii HOM05D000621 ORTHO05D000421 9.7e-07 57.0 82 39.0
TPR.G22463 Trifolium pratense HOM05D000621 ORTHO05D000421 9.7e-07 57.0 75 38.7
FAN20G3012 Fragaria x ananassa HOM05D000621 ORTHO05D000421 1.3e-06 56.6 81 44.4
Medtr5g089140 Medicago truncatula HOM05D000621 ORTHO05D000421 1.3e-06 56.6 75 37.3
PSO017G3263 Papaver somniferum HOM05D000492 ORTHO05D000421 1.3e-06 56.6 75 42.7
Solyc06g062570.1 Solanum lycopersicum HOM05D000621 ORTHO05D000421 1.3e-06 56.6 68 44.1
Sopen06g028820 Solanum pennellii HOM05D000621 ORTHO05D000421 1.3e-06 56.6 78 42.3
TWI12G0894 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 1.3e-06 56.6 76 38.2
ECA238G0422 Erigeron canadensis HOM05D000621 ORTHO05D000421 1.7e-06 56.2 80 37.5
Hma1.2p1_0987F.1_g244610 Hydrangea macrophylla HOM05D000621 ORTHO05D000421 1.7e-06 56.2 68 39.7
PGSC0003DMG400027056 Solanum tuberosum HOM05D000621 ORTHO05D000421 1.7e-06 56.2 78 42.3
Peaxi162Scf00227g00082 Petunia axillaris HOM05D000621 ORTHO05D000421 2.2e-06 55.8 73 41.1
FvH4_6g14470 Fragaria vesca HOM05D000621 ORTHO05D000421 2.8e-06 55.5 81 45.7
FAN05G3124 Fragaria x ananassa HOM05D000621 ORTHO05D000421 2.8e-06 55.5 81 45.7
FAN27G1190 Fragaria x ananassa HOM05D000621 ORTHO05D000421 2.8e-06 55.5 81 43.2
PGSC0003DMG400027076 Solanum tuberosum HOM05D000621 ORTHO05D000421 2.8e-06 55.5 81 35.8
Medtr4g079830 Medicago truncatula HOM05D000621 ORTHO05D000421 3.7e-06 55.1 87 36.8
Ca_18882_v3 Cicer arietinum L. HOM05D000621 ORTHO05D000421 4.8e-06 54.7 74 40.5
FAN15G1745 Fragaria x ananassa HOM05D000621 ORTHO05D000421 4.8e-06 54.7 81 44.4
Sc12g0003500 Simmondsia chinensis HOM05D000621 ORTHO05D000421 4.8e-06 54.7 85 36.5
Sopen06g028490 Solanum pennellii HOM05D000621 ORTHO05D000421 4.8e-06 54.7 82 39.0
FAN24G1261 Fragaria x ananassa HOM05D000621 ORTHO05D000421 6.3e-06 54.3 81 44.4
Medtr5g089220 Medicago truncatula HOM05D000621 ORTHO05D000421 6.3e-06 54.3 75 36.0
Ah.07g201640 Amaranthus hybridus HOM05D000621 ORTHO05D000421 8.2e-06 53.9 79 36.7
Lj3g0001216 Lotus japonicus HOM05D000621 ORTHO05D000421 8.2e-06 53.9 82 31.7
Psat7g165520 Pisum sativum HOM05D000621 ORTHO05D000421 8.2e-06 53.9 89 34.8


User provided reference genes

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