Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 4.0e-96 354.8 180 100.0
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 4.0e-96 354.8 180 100.0
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 7.9e-92 340.5 180 95.0
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 1.6e-84 316.2 180 86.1
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 7.9e-84 313.9 180 85.6
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 1.4e-80 303.1 180 84.4
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 1.4e-80 303.1 180 86.1
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.5e-79 299.7 180 82.2
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 3.4e-79 298.5 178 84.3
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 3.4e-79 298.5 178 84.3
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 4.5e-79 298.1 180 82.8
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 5.8e-79 297.7 180 83.3
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.8e-79 297.7 180 85.0
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 5.8e-79 297.7 179 83.8
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.8e-78 295.0 180 83.9
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 4.9e-78 294.7 181 84.0
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.5e-78 294.3 180 83.9
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.5e-78 294.3 180 83.9
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 1.1e-77 293.5 180 79.4
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 2.5e-77 292.4 180 81.7
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 3.2e-77 292.0 180 81.1
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 4.2e-77 291.6 180 78.3
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 5.5e-77 291.2 180 81.7
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 5.5e-77 291.2 180 81.1
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 7.1e-77 290.8 203 75.9
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 2.1e-76 289.3 180 82.8
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 2.1e-76 289.3 180 81.1
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 2.7e-76 288.9 179 81.0
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 2.7e-76 288.9 179 81.0
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 3.5e-76 288.5 180 81.7
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 6.0e-76 287.7 180 82.2
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.9e-76 287.3 180 79.4
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 1.0e-75 287.0 180 81.1
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 1.0e-75 287.0 184 79.9
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.0e-75 287.0 180 80.0
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 1.3e-75 286.6 161 87.6
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 1.3e-75 286.6 180 78.9
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.3e-75 286.6 180 80.0
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 1.8e-75 286.2 181 81.2
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 2.3e-75 285.8 178 80.3
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 2.3e-75 285.8 178 77.5
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 3.0e-75 285.4 185 77.3
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 3.0e-75 285.4 180 81.1
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 3.9e-75 285.0 180 80.0
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 3.9e-75 285.0 173 83.8
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 5.1e-75 284.6 173 85.0
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 6.7e-75 284.3 180 78.3
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 8.7e-75 283.9 173 83.8
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 8.7e-75 283.9 180 80.6
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 8.7e-75 283.9 178 78.7
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 8.7e-75 283.9 172 82.6
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 1.1e-74 283.5 180 77.8
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 1.5e-74 283.1 161 85.7
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 2.5e-74 282.3 179 78.8
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 2.5e-74 282.3 173 83.8
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 4.3e-74 281.6 161 85.1
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 7.4e-74 280.8 175 82.9
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 7.4e-74 280.8 175 82.9
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 7.4e-74 280.8 183 77.0
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 9.6e-74 280.4 158 88.0
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 2.8e-73 278.9 159 86.2
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 3.7e-73 278.5 161 85.1
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 4.8e-73 278.1 179 76.0
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 6.3e-73 277.7 185 76.8
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 1.1e-72 276.9 161 83.9
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 1.8e-72 276.2 159 85.5
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 3.1e-72 275.4 153 89.5
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 4.1e-72 275.0 180 77.8
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 4.1e-72 275.0 161 83.9
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 4.1e-72 275.0 159 84.9
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 4.1e-72 275.0 159 84.9
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 5.3e-72 274.6 189 76.2
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 5.3e-72 274.6 159 84.9
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 5.3e-72 274.6 158 84.8
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 6.9e-72 274.2 172 81.4
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 6.9e-72 274.2 179 75.4
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 9.0e-72 273.9 181 76.2
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 1.5e-71 273.1 158 84.2
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 1.5e-71 273.1 159 84.9
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.5e-71 273.1 178 76.4
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 2.0e-71 272.7 169 83.4
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 2.0e-71 272.7 169 83.4
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 2.6e-71 272.3 180 74.4
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 2.6e-71 272.3 180 73.9
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.7e-70 269.6 180 73.9
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 2.2e-70 269.2 159 83.0
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.9e-70 268.9 145 91.0
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 2.9e-70 268.9 145 91.0
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 5.0e-70 268.1 159 83.0
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 5.0e-70 268.1 159 83.0
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 5.0e-70 268.1 160 83.8
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 8.5e-70 267.3 176 76.1
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 1.9e-69 266.2 161 81.4
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 4.2e-69 265.0 178 74.2
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 3.6e-68 261.9 180 71.7
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 3.6e-68 261.9 177 73.4
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 4.6e-68 261.5 146 88.4
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 4.6e-68 261.5 145 88.3
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 6.1e-68 261.2 171 78.4
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 1.0e-67 260.4 170 76.5
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 3.0e-67 258.8 175 72.0
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 3.9e-67 258.5 137 94.2
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 2.5e-66 255.8 177 71.2
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.3e-65 253.4 181 72.9
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 2.2e-65 252.7 140 87.9
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.2e-65 252.7 142 86.6
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 2.8e-65 252.3 178 70.2
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 4.8e-65 251.5 148 85.1
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 3.1e-64 248.8 177 68.4
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 7.7e-63 244.2 176 72.7
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 6.5e-62 241.1 137 88.3
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-61 240.4 158 74.7
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-61 240.4 175 69.1
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.2e-60 236.9 176 69.9
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.7e-60 235.7 180 71.7
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 3.3e-58 228.8 164 69.5
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 5.3e-56 221.5 135 83.7
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.5e-53 212.6 155 71.6
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 6.1e-52 208.0 165 66.1
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 6.1e-52 208.0 171 58.5
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 9.7e-50 200.7 109 91.7
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 1.4e-48 196.8 110 87.3
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 1.4e-48 196.8 161 57.8
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 3.1e-48 195.7 117 86.3
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 8.5e-46 187.6 141 70.2
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.1e-45 187.2 117 76.1
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 1.8e-43 179.9 113 80.5
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.4e-40 170.2 128 67.2
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 2.7e-39 166.0 151 55.0
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 4.5e-39 165.2 100 82.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 5.5e-37 158.3 111 70.3
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.2e-34 150.6 77 92.2
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.7e-33 146.7 130 60.0
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.4e-32 143.7 119 64.7
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.1e-32 142.5 119 63.0
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 3.8e-30 135.6 93 73.1
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.0e-30 135.2 77 81.8
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 6.5e-30 134.8 188 45.7
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.9e-29 133.3 68 91.2
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.9e-29 133.3 77 84.4
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 8.0e-28 127.9 153 49.7
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 1.4e-24 117.1 85 69.4
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 1.2e-23 114.0 120 56.7
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 2.0e-23 113.2 64 89.1
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 8.0e-20 101.3 77 67.5
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 1.3e-17 94.0 66 72.7
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 1.3e-17 94.0 52 82.7
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 7.0e-16 88.2 58 72.4
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 7.8e-15 84.7 58 75.9
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 2.7e-07 59.7 33 84.8


User provided reference genes

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