Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 1.8e-228 795.8 477 100.0
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 3.8e-202 708.4 472 78.6
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 4.2e-124 449.1 467 52.7
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 1.6e-112 410.6 458 49.8
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 1.2e-110 404.4 458 49.1
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 7.1e-108 395.2 473 47.6
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 9.3e-108 394.8 462 47.0
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 9.3e-108 394.8 473 47.8
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 2.1e-107 393.7 429 64.1
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 5.1e-106 389.0 452 48.9
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 8.7e-106 388.3 441 47.6
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 5.6e-105 385.6 441 48.8
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 7.4e-105 385.2 417 48.2
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 4.8e-104 382.5 456 46.7
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 4.8e-104 382.5 473 47.1
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 3.1e-103 379.8 418 49.5
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 3.1e-103 379.8 418 49.5
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 1.2e-102 377.9 456 46.7
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 4.5e-102 375.9 424 49.3
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 1.0e-101 374.8 424 47.2
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 1.1e-100 371.3 423 58.4
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 2.5e-100 370.2 462 45.5
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 5.5e-100 369.0 423 46.8
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 1.6e-99 367.5 467 46.7
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 2.7e-99 366.7 418 48.6
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 1.0e-98 364.8 423 47.0
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 1.0e-98 364.8 480 45.6
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 1.3e-98 364.4 417 48.0
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 2.8e-96 356.7 417 47.7
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 1.1e-95 354.8 451 46.6
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 1.1e-95 354.8 418 57.9
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 2.4e-95 353.6 458 44.3
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 2.4e-95 353.6 455 45.3
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 4.5e-94 349.4 417 46.3
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 7.6e-94 348.6 426 46.0
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 1.7e-93 347.4 418 45.9
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 5.0e-93 345.9 443 44.5
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 5.0e-93 345.9 443 44.5
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 6.5e-93 345.5 417 51.3
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 8.5e-93 345.1 416 45.2
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 8.5e-93 345.1 416 45.2
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 1.1e-92 344.7 418 46.2
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 4.2e-92 342.8 438 53.9
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 4.2e-92 342.8 418 45.9
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 7.2e-92 342.0 418 46.4
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 1.6e-91 340.9 445 44.9
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 6.1e-91 339.0 418 45.5
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 1.8e-90 337.4 429 42.0
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 1.8e-90 337.4 442 44.6
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 6.7e-90 335.5 417 46.0
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 6.7e-90 335.5 455 53.6
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 1.5e-89 334.3 428 44.4
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 4.3e-89 332.8 419 46.3
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 5.7e-89 332.4 417 55.6
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 1.3e-88 331.3 419 45.3
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 3.1e-87 326.6 418 48.8
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 5.3e-87 325.9 438 54.1
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 1.9e-84 317.4 420 43.3
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 2.5e-84 317.0 420 43.3
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 3.6e-83 313.2 418 41.6
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 4.6e-83 312.8 411 59.6
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 6.1e-83 312.4 418 58.1
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 7.9e-83 312.0 418 58.1
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 3.9e-82 309.7 418 58.4
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 6.7e-82 308.9 436 51.6
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 1.1e-81 308.1 418 58.1
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 1.1e-81 308.1 419 41.8
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 3.3e-81 306.6 457 38.3
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 5.7e-81 305.8 451 41.0
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 9.7e-81 305.1 450 40.0
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 1.3e-80 304.7 442 41.4
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 1.1e-79 301.6 419 39.6
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 2.4e-79 300.4 418 55.3
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 1.5e-78 297.7 448 51.3
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 1.0e-77 295.0 448 51.3
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 2.9e-77 293.5 456 41.4
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 3.8e-77 293.1 473 36.4
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 5.0e-77 292.7 356 45.2
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 5.0e-77 292.7 444 40.1
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 9.4e-76 288.5 420 39.3
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 9.4e-76 288.5 447 38.0
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 1.1e-73 281.6 421 39.4
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 8.2e-72 275.4 356 44.7
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 8.2e-72 275.4 419 49.2
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 3.5e-70 270.0 420 36.4
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 1.9e-68 264.2 480 46.2
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 7.2e-68 262.3 421 36.8
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 1.4e-66 258.1 360 41.7
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 2.2e-64 250.8 473 37.6
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 2.7e-62 243.8 401 46.6
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 2.8e-56 223.8 320 41.9
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 2.4e-55 220.7 423 33.3
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 3.2e-52 210.3 300 41.7
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 1.1e-44 185.3 404 32.4
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 1.4e-42 178.3 148 57.4
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 8.3e-40 169.1 204 44.6
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.3e-37 161.8 145 53.8
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 8.6e-37 159.1 148 50.7
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 8.6e-37 159.1 412 28.9
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.1e-36 158.7 153 49.0
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 2.0e-33 147.9 211 42.2
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 2.1e-27 127.9 138 46.4
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 1.1e-23 115.5 385 33.2
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.1e-23 115.5 186 38.2
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 7.8e-22 109.4 130 43.1
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 5.1e-21 106.7 160 38.1
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 6.8e-18 96.3 115 45.2
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 4.4e-17 93.6 148 34.5
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 5.8e-17 93.2 106 40.6
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 5.8e-17 93.2 106 40.6
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 2.9e-16 90.9 118 38.1
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 1.4e-15 88.6 96 42.7
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 2.1e-14 84.7 115 43.5
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 2.3e-13 81.3 106 37.7
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 8.7e-13 79.3 370 20.8
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 2.5e-12 77.8 117 39.3
arahy.Tifrunner.gnm1.ann1.YH938E Arachis hypogaea HOM05D006294 ORTHO05D007668 3.6e-11 73.9 107 37.4
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 2.0e-09 68.2 92 39.1
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 4.9e-08 63.5 98 31.6
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 6.4e-08 63.2 94 36.2
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 1.1e-07 62.4 69 52.2
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 1.1e-07 62.4 62 43.5
Lsat_1_v5_gn_4_106880 Lactuca sativa HOM05D004079 ORTHO05D005437 4.2e-07 60.5 98 35.7
Atru.chr9.2336 Acer truncatum HOM05D004079 ORTHO05D005437 7.1e-07 59.7 98 34.7
Thhalv10009547m.g Eutrema salsugineum HOM05D004079 ORTHO05D005437 7.1e-07 59.7 129 31.0
SalBow5G5059 Salvia bowleyana HOM05D004079 ORTHO05D005437 9.3e-07 59.3 129 31.0
Sp1g16880 Schrenkiella parvula HOM05D004079 ORTHO05D005437 9.3e-07 59.3 127 31.5
arahy.Tifrunner.gnm1.ann1.L9KWYC Arachis hypogaea HOM05D006294 ORTHO05D007668 1.6e-06 58.5 74 37.8
CARHR019550 Cardamine hirsuta HOM05D004079 ORTHO05D005437 1.6e-06 58.5 129 31.0
Nn4g23007 Nelumbo nucifera HOM05D004079 ORTHO05D005437 1.6e-06 58.5 98 34.7
arahy.Tifrunner.gnm1.ann1.D2HFCL Arachis hypogaea HOM05D006294 ORTHO05D007668 2.1e-06 58.2 139 30.2
A08p30100 Brassica napus HOM05D004079 ORTHO05D005437 2.7e-06 57.8 129 30.2
BraA08t34945Z Brassica rapa HOM05D004079 ORTHO05D005437 2.7e-06 57.8 129 30.2
Carub.0002s2154 Capsella rubella HOM05D004079 ORTHO05D005437 2.7e-06 57.8 98 34.7
Cpa.g.sc17.195 Carica papaya HOM05D004079 ORTHO05D005437 2.7e-06 57.8 98 34.7
Sp5g29870 Schrenkiella parvula HOM05D004079 ORTHO05D005437 2.7e-06 57.8 98 35.7
TAR629G1274 Trochodendron aralioides HOM05D004079 ORTHO05D005437 2.7e-06 57.8 129 30.2
AL2G34640 Arabidopsis lyrata HOM05D004079 ORTHO05D005437 3.5e-06 57.4 98 34.7
DCAR_005313 Daucus carota HOM05D004079 ORTHO05D005437 3.5e-06 57.4 129 30.2
MD06G1185900 Malus domestica HOM05D004079 ORTHO05D005437 3.5e-06 57.4 98 33.7
Mapoly0089s0054 Marchantia polymorpha HOM05D004079 ORTHO05D005437 3.5e-06 57.4 91 29.7
AT1G74750 Arabidopsis thaliana HOM05D004079 ORTHO05D005437 4.6e-06 57.0 98 33.7
BcaB03g12947 Brassica carinata HOM05D004079 ORTHO05D005437 4.6e-06 57.0 129 31.0
Potri.015G066400 Populus trichocarpa HOM05D004079 ORTHO05D005437 4.6e-06 57.0 98 35.7
Aqoxy3G00809 Aquilegia oxysepala HOM05D004079 ORTHO05D005437 7.8e-06 56.2 129 29.5
BcaB02g06965 Brassica carinata HOM05D004079 ORTHO05D005437 7.8e-06 56.2 95 35.8
A06p15120 Brassica napus HOM05D004079 ORTHO05D005437 7.8e-06 56.2 128 32.0
A07p29240 Brassica napus HOM05D004079 ORTHO05D005437 7.8e-06 56.2 95 35.8
C06p33140 Brassica napus HOM05D004079 ORTHO05D005437 7.8e-06 56.2 95 35.8
BolC6t38429H Brassica oleracea HOM05D004079 ORTHO05D005437 7.8e-06 56.2 95 35.8
BraA06t24627Z Brassica rapa HOM05D004079 ORTHO05D005437 7.8e-06 56.2 128 32.0
BraA07t30563Z Brassica rapa HOM05D004079 ORTHO05D005437 7.8e-06 56.2 95 35.8


User provided reference genes

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