Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 1.6e-155 552.7 290 100.0
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 1.4e-146 523.1 290 95.5
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 1.3e-136 490.0 290 89.7
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 4.2e-135 485.0 290 87.9
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 1.8e-109 399.8 296 75.0
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 2.3e-109 399.4 297 74.4
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 6.3e-107 391.3 293 72.7
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 1.1e-106 390.6 301 74.4
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 1.8e-106 389.8 289 75.1
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 9.0e-106 387.5 299 73.6
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 2.0e-105 386.3 298 72.8
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 2.6e-105 386.0 297 72.7
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 3.8e-104 382.1 293 74.1
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 3.8e-104 382.1 293 74.1
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 3.8e-104 382.1 291 73.5
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 3.8e-104 382.1 293 71.3
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 6.5e-104 381.3 293 74.1
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 6.5e-104 381.3 291 73.5
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 2.5e-103 379.4 293 73.0
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 3.2e-103 379.0 291 73.2
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 4.2e-103 378.6 293 73.7
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 7.2e-103 377.9 299 73.2
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 9.3e-103 377.5 293 73.7
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 1.2e-102 377.1 291 72.2
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 1.2e-102 377.1 280 73.6
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 2.7e-102 375.9 297 70.4
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 2.7e-102 375.9 301 69.4
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 3.6e-102 375.6 299 69.9
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 7.9e-102 374.4 294 72.1
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 1.8e-101 373.2 291 72.2
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 3.9e-101 372.1 308 70.5
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 5.1e-101 371.7 297 69.7
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 1.5e-100 370.2 297 70.4
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 1.5e-100 370.2 314 67.5
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.5e-100 370.2 291 72.5
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 1.5e-100 370.2 291 72.5
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.9e-100 369.8 291 72.5
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 4.3e-100 368.6 294 69.7
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 9.7e-100 367.5 302 66.2
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 2.2e-99 366.3 298 69.8
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 4.8e-99 365.2 298 67.1
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 6.3e-99 364.8 298 67.4
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 1.8e-98 363.2 276 73.2
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 3.4e-97 359.0 293 70.6
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 1.7e-96 356.7 308 67.5
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 8.5e-96 354.4 292 70.2
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 1.4e-95 353.6 311 65.3
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 1.9e-95 353.2 272 72.8
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 1.9e-95 353.2 294 66.3
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 5.5e-95 351.7 311 65.3
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 9.4e-95 350.9 297 68.4
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 1.2e-94 350.5 295 66.8
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 1.6e-94 350.1 297 66.0
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 2.7e-94 349.4 294 67.0
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 2.7e-94 349.4 300 67.3
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 2.7e-94 349.4 291 70.4
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 1.0e-93 347.4 294 69.7
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.8e-93 346.7 250 74.0
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 2.3e-93 346.3 303 66.3
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 3.0e-93 345.9 301 67.1
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 3.9e-93 345.5 299 66.2
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 8.8e-93 344.4 240 75.0
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 8.8e-93 344.4 252 72.6
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 1.5e-92 343.6 298 66.4
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 1.5e-92 343.6 299 65.2
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 1.5e-92 343.6 220 81.8
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 7.4e-92 341.3 240 74.2
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 2.2e-91 339.7 292 66.1
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 2.8e-91 339.3 236 75.4
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 4.8e-91 338.6 302 64.9
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 6.3e-91 338.2 295 65.1
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 6.3e-91 338.2 283 66.1
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 1.1e-90 337.4 298 66.4
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 1.4e-90 337.0 295 64.1
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 1.8e-90 336.7 292 66.4
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 6.9e-90 334.7 240 72.5
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 9.1e-90 334.3 337 59.3
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 5.9e-89 331.6 233 76.0
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 3.8e-88 328.9 291 65.6
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 8.5e-88 327.8 292 63.4
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 1.1e-87 327.4 230 76.1
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 1.1e-87 327.4 294 63.9
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 1.1e-87 327.4 295 66.4
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 1.9e-87 326.6 233 73.8
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 1.2e-86 323.9 269 66.2
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 1.2e-86 323.9 220 77.7
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 1.2e-86 323.9 249 67.9
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 1.6e-86 323.6 290 63.1
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 4.7e-86 322.0 294 62.9
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 4.7e-86 322.0 251 70.5
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 7.9e-86 321.2 294 65.0
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 2.3e-85 319.7 295 64.1
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 2.3e-85 319.7 295 64.1
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 5.2e-85 318.5 290 63.8
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 1.1e-84 317.4 293 64.2
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 1.1e-84 317.4 294 64.3
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 1.1e-84 317.4 295 63.7
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 1.1e-84 317.4 218 75.7
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 1.1e-84 317.4 289 64.0
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 2.6e-84 316.2 291 63.6
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 2.6e-84 316.2 285 61.8
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 5.7e-84 315.1 296 63.5
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 9.7e-84 314.3 296 63.2
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 9.7e-84 314.3 296 63.2
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 1.7e-83 313.5 234 68.4
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 1.8e-82 310.1 291 60.8
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 1.8e-82 310.1 235 68.9
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 5.3e-82 308.5 234 66.7
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 2.0e-81 306.6 233 69.5
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 2.0e-81 306.6 239 65.7
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 4.5e-81 305.4 231 74.5
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 4.5e-81 305.4 296 61.5
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 5.9e-81 305.1 235 68.5
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 3.8e-80 302.4 279 63.8
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 1.5e-79 300.4 279 63.8
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 5.5e-79 298.5 236 66.5
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 7.2e-79 298.1 220 71.8
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 7.2e-79 298.1 220 70.0
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 2.7e-78 296.2 233 68.2
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 7.5e-76 288.1 203 75.4
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 1.7e-75 287.0 267 64.4
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 2.0e-73 280.0 219 68.9
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 8.5e-72 274.6 216 67.6
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.9e-71 273.5 256 61.7
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 4.2e-71 272.3 207 65.7
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 4.2e-71 272.3 236 62.3
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 3.4e-68 262.7 248 62.9
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 6.3e-67 258.5 171 78.4
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 2.4e-66 256.5 162 80.9
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 2.0e-65 253.4 259 54.8
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 2.9e-64 249.6 180 69.4
Mapoly0158s0035 Marchantia polymorpha HOM05D004634 ORTHO05D005502 1.1e-63 247.7 248 53.6
AagrBONN_evm.TU.Sc2ySwM_344.2768 Anthoceros agrestis HOM05D004634 ORTHO05D005502 5.2e-61 238.8 251 54.2
Pp3c10_20920 Physcomitrium patens HOM05D004634 ORTHO05D005502 8.8e-61 238.0 239 55.2
Pp3c20_20480 Physcomitrium patens HOM05D004634 ORTHO05D005502 2.2e-59 233.4 287 49.5
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 7.3e-55 218.4 181 64.6
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 4.0e-53 212.6 142 76.8
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 5.7e-52 208.8 252 44.8
SMO356G0675 Selaginella moellendorffii HOM05D004634 ORTHO05D005502 4.6e-49 199.1 236 49.2
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 1.2e-46 191.0 175 62.9
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.0e-44 183.7 157 63.7
ECA246G0196 Erigeron canadensis HOM05D004634 ORTHO05D005502 2.5e-39 166.8 121 74.4
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 1.8e-37 160.6 113 72.6
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 3.3e-31 139.8 118 60.2
Actinidia37338 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.2e-30 137.9 106 68.9
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 1.4e-29 134.4 139 56.8
MCO05G599 Micromonas commoda HOM05D004634 ORTHO05D005502 1.3e-27 127.9 230 34.8
CsaV3_7G001200 Cucumis sativus L. HOM05D004634 ORTHO05D005502 4.6e-25 119.4 155 50.3
Cre03.g190150 Chlamydomonas reinhardtii HOM05D004634 ORTHO05D005502 4.4e-20 102.8 258 31.4
CsaV3_7G001190 Cucumis sativus L. HOM05D004634 ORTHO05D005502 7.6e-20 102.1 63 85.7
Actinidia32030 Actinidia chinensis HOM05D004634 ORTHO05D005502 6.4e-19 99.0 123 52.0
BcaC07g41182 Brassica carinata HOM05D004634 ORTHO05D005502 4.6e-09 66.2 60 60.0
AUR62032163 Chenopodium quinoa HOM05D000764 ORTHO05D002819 3.9e-08 63.2 192 25.5
PRCOL_00007096 Prasinoderma coloniale HOM05D004634 ORTHO05D005502 6.7e-08 62.4 222 27.9
Dinv01013 Davidia involucrata HOM05D004634 ORTHO05D005502 8.7e-08 62.0 53 67.9
TWI60G0248 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 1.5e-07 61.2 195 27.7
Hund02536 Selenicereus undatus HOM05D000764 ORTHO05D002819 3.3e-07 60.1 186 25.8
Pp3c11_16200 Physcomitrium patens HOM05D000764 ORTHO05D002819 4.3e-07 59.7 225 26.7
TWI81G0887 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 9.6e-07 58.5 195 26.7
Sabra12G0042300 Salix brachista HOM05D000764 ORTHO05D002819 1.3e-06 58.2 233 24.0
Potri.012G057700 Populus trichocarpa HOM05D000764 ORTHO05D002819 1.6e-06 57.8 233 24.5
Sopen03g033570 Solanum pennellii HOM05D000764 ORTHO05D002819 3.7e-06 56.6 223 26.9
CAN.G982.7 Capsicum annuum HOM05D000764 ORTHO05D002819 8.1e-06 55.5 222 27.0
Pp3c15_20170 Physcomitrium patens HOM05D000764 ORTHO05D002819 8.1e-06 55.5 191 27.7
Sed0013361 Sechium edule HOM05D000764 ORTHO05D002819 8.1e-06 55.5 175 26.9
PGSC0003DMG403024509 Solanum tuberosum HOM05D000764 ORTHO05D002819 8.1e-06 55.5 223 26.5


User provided reference genes

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