Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 1.8e-102 375.9 191 100.0
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 1.3e-68 263.5 141 95.0
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 3.8e-44 182.2 158 63.9
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 1.6e-42 176.8 138 70.3
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 2.1e-42 176.4 138 65.2
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 2.1e-42 176.4 138 65.2
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 7.9e-42 174.5 138 65.2
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 5.1e-41 171.8 138 68.1
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 8.7e-41 171.0 146 63.7
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 4.3e-40 168.7 138 68.8
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 5.7e-40 168.3 134 66.4
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 1.6e-39 166.8 141 66.0
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 2.2e-39 166.4 143 66.4
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 2.8e-39 166.0 138 68.1
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 3.7e-39 165.6 138 68.1
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 1.4e-38 163.7 138 63.0
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 2.4e-38 162.9 137 65.0
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 4.1e-38 162.2 138 68.1
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 6.9e-38 161.4 141 64.5
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 1.2e-37 160.6 147 61.9
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 2.0e-37 159.8 137 67.2
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 2.0e-37 159.8 143 61.5
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 5.9e-37 158.3 137 65.0
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 1.7e-36 156.8 137 65.0
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 1.7e-36 156.8 133 64.7
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 2.2e-36 156.4 141 61.7
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 2.9e-36 156.0 141 63.1
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 3.8e-36 155.6 135 62.2
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 5.0e-36 155.2 135 62.2
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 6.5e-36 154.8 141 62.4
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 1.1e-35 154.1 133 60.9
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 1.1e-35 154.1 133 60.9
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 1.4e-35 153.7 142 59.9
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 2.5e-35 152.9 137 64.2
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 2.5e-35 152.9 138 60.1
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 3.2e-35 152.5 133 61.7
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 5.5e-35 151.8 140 63.6
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 7.2e-35 151.4 137 64.2
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 9.4e-35 151.0 136 61.0
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 1.6e-34 150.2 136 58.8
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 4.6e-34 148.7 134 59.7
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 6.1e-34 148.3 133 60.2
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 1.4e-33 147.1 136 60.3
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 2.3e-33 146.4 134 59.0
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 3.0e-33 146.0 133 60.2
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 3.9e-33 145.6 135 60.0
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 5.1e-33 145.2 133 60.2
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 5.1e-33 145.2 135 59.3
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.0e-32 143.3 142 60.6
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 2.0e-32 143.3 140 60.7
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 2.0e-32 143.3 141 56.7
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 2.6e-32 142.9 136 58.8
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 3.3e-32 142.5 134 60.4
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 4.4e-32 142.1 134 63.4
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 4.4e-32 142.1 137 58.4
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 7.4e-32 141.4 137 58.4
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 1.3e-31 140.6 138 60.1
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 1.3e-31 140.6 139 59.7
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 2.2e-31 139.8 133 57.9
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 2.8e-31 139.4 134 54.5
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 2.8e-31 139.4 133 58.6
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 3.7e-31 139.0 140 61.4
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 6.3e-31 138.3 141 57.4
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 8.2e-31 137.9 134 61.9
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 8.2e-31 137.9 134 61.9
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 1.1e-30 137.5 137 58.4
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.1e-30 137.5 134 62.7
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 1.4e-30 137.1 138 55.8
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.4e-30 136.3 144 54.2
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 2.4e-30 136.3 141 58.9
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 4.1e-30 135.6 134 54.5
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 5.3e-30 135.2 132 56.1
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 5.3e-30 135.2 132 57.6
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 6.9e-30 134.8 134 61.9
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 9.1e-30 134.4 143 55.9
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 9.1e-30 134.4 136 56.6
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 9.1e-30 134.4 134 56.0
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 1.2e-29 134.0 137 56.9
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 1.2e-29 134.0 133 55.6
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 1.2e-29 134.0 133 54.1
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 1.2e-29 134.0 135 53.3
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 2.0e-29 133.3 137 54.0
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 2.0e-29 133.3 136 55.1
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 2.0e-29 133.3 138 56.5
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 2.0e-29 133.3 132 56.8
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.6e-29 132.9 133 58.6
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 2.6e-29 132.9 134 54.5
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 3.4e-29 132.5 133 57.9
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 4.5e-29 132.1 138 56.5
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 5.9e-29 131.7 134 53.0
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 7.7e-29 131.3 140 55.7
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 7.7e-29 131.3 139 57.6
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 7.7e-29 131.3 133 53.4
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 7.7e-29 131.3 137 54.7
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 1.0e-28 131.0 139 54.7
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 1.0e-28 131.0 135 54.1
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 1.3e-28 130.6 142 50.0
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 1.7e-28 130.2 134 49.3
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 2.2e-28 129.8 138 55.1
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 3.8e-28 129.0 134 54.5
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 6.5e-28 128.3 135 55.6
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 8.5e-28 127.9 132 56.1
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 8.5e-28 127.9 136 51.5
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 8.5e-28 127.9 136 51.5
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 8.5e-28 127.9 136 51.5
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 8.5e-28 127.9 136 51.5
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 1.1e-27 127.5 136 51.5
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 2.1e-26 123.2 133 53.4
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 3.6e-26 122.5 136 51.5
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 1.8e-25 120.2 143 51.7
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 8.8e-25 117.9 139 51.1
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 2.6e-24 116.3 119 54.6
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 1.3e-23 114.0 146 47.3
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 2.2e-23 113.2 152 44.1
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 1.1e-22 110.9 121 55.4
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 3.8e-20 102.4 132 46.2
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 6.5e-20 101.7 132 46.2
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 2.1e-18 96.7 119 47.9
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 4.0e-17 92.4 142 42.3
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 8.8e-17 91.3 143 44.1
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 1.2e-16 90.9 66 66.7
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 1.5e-16 90.5 70 67.1
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 2.2e-15 86.7 76 57.9
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 4.8e-15 85.5 125 43.2
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 6.3e-15 85.1 133 42.9
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 3.0e-09 66.2 98 41.8
TAR624G0128 Trochodendron aralioides HOM05D006047 ORTHO05D007353 1.3e-07 60.8 58 51.7
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 1.3e-07 60.8 60 48.3
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 1.7e-07 60.5 136 32.4
Zm00001eb046330 Zea mays HOM05D001486 ORTHO05D036446 3.7e-07 59.3 41 70.7


User provided reference genes

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