Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 2.5e-71 271.9 132 100.0
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 1.6e-49 199.5 142 75.4
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 4.2e-34 148.3 104 71.2
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 3.3e-31 138.7 93 72.0
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 4.3e-31 138.3 93 67.7
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 2.8e-30 135.6 94 71.3
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 4.1e-29 131.7 95 70.5
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 5.3e-29 131.3 95 70.5
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 1.2e-28 130.2 95 68.4
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 1.2e-28 130.2 95 68.4
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 1.5e-28 129.8 96 68.8
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 1.5e-28 129.8 87 71.3
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.0e-28 129.4 89 71.9
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 2.0e-28 129.4 97 64.9
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 4.5e-28 128.3 82 74.4
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 1.0e-27 127.1 89 70.8
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.0e-27 127.1 89 70.8
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.0e-27 127.1 89 70.8
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.0e-27 127.1 89 70.8
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 1.0e-27 127.1 87 72.4
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 1.0e-27 127.1 87 71.3
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.3e-27 126.7 96 66.7
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.7e-27 126.3 88 70.5
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 5.0e-27 124.8 86 73.3
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 5.0e-27 124.8 86 73.3
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 1.9e-26 122.9 117 58.1
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 9.4e-26 120.6 94 67.0
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 1.0e-24 117.1 94 64.9
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 1.4e-24 116.7 93 63.4
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 3.9e-24 115.2 96 57.3
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 1.1e-23 113.6 93 63.4
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 2.0e-23 112.8 94 58.5
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 4.4e-23 111.7 93 60.2
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 4.4e-23 111.7 86 61.6
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 3.7e-22 108.6 98 58.2
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 6.3e-22 107.8 98 58.2
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 6.3e-22 107.8 98 58.2
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 1.1e-21 107.1 91 57.1
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 1.8e-21 106.3 86 65.1
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 1.8e-21 106.3 111 55.9
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 2.4e-21 105.9 74 70.3
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 2.4e-21 105.9 61 85.2
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 9.1e-21 104.0 95 58.9
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 9.1e-21 104.0 86 61.6
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 2.0e-20 102.8 88 62.5
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 2.9e-19 99.0 113 50.4
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 2.9e-19 99.0 93 55.9
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 5.0e-19 98.2 115 49.6
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 6.5e-19 97.8 113 49.6
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 6.5e-19 97.8 113 49.6
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 8.5e-19 97.4 114 49.1
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 1.9e-18 96.3 94 53.2
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 1.9e-18 96.3 100 51.0
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 1.9e-18 96.3 113 49.6
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 9.4e-18 94.0 98 43.9
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 9.4e-18 94.0 94 51.1
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 1.2e-17 93.6 88 54.5
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 1.6e-17 93.2 94 57.4
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 2.7e-17 92.4 109 49.5
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 2.7e-17 92.4 94 51.1
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 8.0e-17 90.9 101 51.5
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 1.4e-16 90.1 77 61.0
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 3.0e-16 89.0 58 74.1
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 3.9e-16 88.6 93 46.2
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 3.9e-16 88.6 122 42.6
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 5.2e-16 88.2 82 56.1
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 5.2e-16 88.2 93 50.5
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 6.7e-16 87.8 109 48.6
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 1.5e-15 86.7 109 46.8
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 1.5e-15 86.7 109 46.8
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 2.0e-15 86.3 102 49.0
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 2.0e-15 86.3 74 56.8
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 3.3e-15 85.5 111 45.9
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 3.3e-15 85.5 109 46.8
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 5.7e-15 84.7 110 45.5
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 5.7e-15 84.7 110 45.5
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 2.2e-14 82.8 94 48.9
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 2.8e-14 82.4 66 60.6
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 2.8e-14 82.4 66 60.6
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 7.7e-12 74.3 64 62.5
Lalb_Chr23g0265241 Lupinus albus HOM05D008028 ORTHO05D010005 9.4e-10 67.4 104 40.4
SMO196G0045 Selaginella moellendorffii HOM05D002359 ORTHO05D002394 6.1e-09 64.7 73 50.7
HanXRQChr15g0485231 Helianthus annuus HOM05D002019 ORTHO05D002150 1.4e-08 63.5 77 46.8
Os01g0739500 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 4.0e-08 62.0 69 43.5
SEGI_32080 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 4.0e-08 62.0 52 55.8
Zm00001eb153780 Zea mays HOM05D002019 ORTHO05D010005 6.7e-08 61.2 55 52.7
Lsat_1_v5_gn_3_69461 Lactuca sativa HOM05D002019 ORTHO05D002150 1.2e-07 60.5 73 49.3
CSS0034970 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 1.5e-07 60.1 59 49.2
Dinv19090 Davidia involucrata HOM05D002019 ORTHO05D002150 1.5e-07 60.1 58 50.0
Hma1.2p1_0034F.1_g021470 Hydrangea macrophylla HOM05D002019 ORTHO05D002150 3.3e-07 58.9 86 41.9
Actinidia17154 Actinidia chinensis HOM05D002019 ORTHO05D002150 4.4e-07 58.5 71 45.1
Lj6g0022787 Lotus japonicus HOM05D002019 ORTHO05D002150 5.7e-07 58.2 77 42.9
Actinidia40403 Actinidia chinensis HOM05D002019 ORTHO05D002150 7.5e-07 57.8 55 54.5
Glyma.02G239800 Glycine max HOM05D002019 ORTHO05D002150 7.5e-07 57.8 59 55.9
TAR629G3490 Trochodendron aralioides HOM05D002019 ORTHO05D002150 7.5e-07 57.8 60 48.3
GSVIVG01035279001 Vitis vinifera HOM05D002019 ORTHO05D002150 7.5e-07 57.8 48 60.4
Oeu012515.1 Olea europaea HOM05D002019 ORTHO05D002150 9.7e-07 57.4 59 50.8
Glyma.11G208700 Glycine max HOM05D002019 ORTHO05D002150 1.3e-06 57.0 70 45.7
Nn4g24832 Nelumbo nucifera HOM05D002019 ORTHO05D002150 1.3e-06 57.0 59 49.2
Zm00001eb293570 Zea mays HOM05D002019 ORTHO05D010005 1.3e-06 57.0 50 50.0
DCAR_014138 Daucus carota HOM05D002019 ORTHO05D002150 1.7e-06 56.6 81 40.7
arahy.Tifrunner.gnm1.ann1.SQC659 Arachis hypogaea HOM05D002019 ORTHO05D002150 2.2e-06 56.2 64 50.0
Cc07_g12670 Coffea canephora HOM05D002019 ORTHO05D002150 2.2e-06 56.2 49 59.2
ATR0705G013 Amborella trichopoda HOM05D002019 ORTHO05D002150 2.8e-06 55.8 81 40.7
arahy.Tifrunner.gnm1.ann1.TVU1YR Arachis hypogaea HOM05D002019 ORTHO05D002150 2.8e-06 55.8 72 48.6
arahy.Tifrunner.gnm1.ann1.ZUC4D4 Arachis hypogaea HOM05D002019 ORTHO05D002150 2.8e-06 55.8 71 46.5
MSTRG.15624 Avicennia marina HOM05D002019 ORTHO05D002150 2.8e-06 55.8 49 55.1
MBI03_g24044_MAGBIO Magnolia biondii HOM05D002019 ORTHO05D002150 2.8e-06 55.8 85 36.5
TWI74G0642 Tripterygium wilfordii HOM05D002019 ORTHO05D002150 2.8e-06 55.8 59 49.2
Atru.chr1.1979 Acer truncatum HOM05D002019 ORTHO05D002150 3.7e-06 55.5 49 53.1
Rhsim10G0186200 Rhododendron simsii HOM05D002019 ORTHO05D002150 3.7e-06 55.5 59 49.2
CiPaw.03G078600 Carya illinoinensis HOM05D002019 ORTHO05D002150 4.8e-06 55.1 49 55.1
SEGI_14454 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 4.8e-06 55.1 52 50.0
TAR383G0675 Trochodendron aralioides HOM05D002019 ORTHO05D002150 4.8e-06 55.1 59 47.5
Phvul.008G241900 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 6.3e-06 54.7 49 61.2
TAR622G0329 Trochodendron aralioides HOM05D002019 ORTHO05D002150 6.3e-06 54.7 60 46.7
Zm00001eb353580 Zea mays HOM05D002019 ORTHO05D010005 6.3e-06 54.7 68 36.8
LjContig00141g0027651 Lotus japonicus HOM05D002019 ORTHO05D002150 8.2e-06 54.3 49 61.2
MBI04_g07005_MAGBIO Magnolia biondii HOM05D002019 ORTHO05D002150 8.2e-06 54.3 59 47.5
Os05g0524100 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 8.2e-06 54.3 37 62.2
Solyc03g031890.3 Solanum lycopersicum HOM05D002019 ORTHO05D002150 8.2e-06 54.3 64 45.3
Sopen03g005760 Solanum pennellii HOM05D002019 ORTHO05D002150 8.2e-06 54.3 64 45.3


User provided reference genes

Program Settings