Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 0.0e+00 1444.9 730 100.0
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 0.0e+00 1076.2 711 79.9
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 7.8e-239 830.9 717 65.6
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 5.4e-224 781.6 717 62.3
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 2.6e-154 550.1 696 48.3
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 5.9e-130 469.2 699 42.9
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 1.3e-113 414.8 724 42.5
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 3.9e-113 413.3 722 39.2
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 4.3e-112 409.8 727 38.8
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 3.6e-111 406.8 703 40.8
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 6.4e-108 396.0 733 39.7
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 1.1e-107 395.2 700 42.1
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 1.6e-103 381.3 713 39.7
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 8.4e-100 369.0 726 36.9
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.9e-99 367.9 715 38.0
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 1.2e-98 365.2 725 37.7
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.3e-97 361.7 708 38.3
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 1.7e-97 361.3 699 39.2
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 6.6e-97 359.4 707 36.8
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 3.6e-95 353.6 716 37.3
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 1.1e-94 352.1 716 37.2
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 9.3e-91 339.0 691 39.2
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 6.6e-89 332.8 707 36.4
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 4.3e-88 330.1 398 50.3
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 2.4e-83 314.3 711 33.8
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 3.5e-82 310.5 741 34.7
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 2.3e-81 307.8 709 36.7
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 1.9e-80 304.7 711 35.3
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 2.5e-80 304.3 717 35.8
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 7.4e-80 302.8 741 32.9
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 1.4e-78 298.5 719 36.2
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 5.3e-78 296.6 699 35.8
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 1.0e-76 292.4 688 34.3
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 3.2e-75 287.3 735 35.1
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 4.2e-75 287.0 704 35.4
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 5.5e-75 286.6 699 35.5
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 6.0e-74 283.1 696 35.5
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 1.5e-69 268.5 738 32.1
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 1.9e-67 261.5 736 32.5
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 2.5e-67 261.2 738 32.4
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 3.2e-67 260.8 674 32.5
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 2.7e-66 257.7 698 32.5
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 7.9e-66 256.1 736 32.5
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 7.9e-66 256.1 611 34.0
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 4.3e-64 250.4 686 32.4
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 2.8e-63 247.7 725 32.0
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 6.5e-60 236.5 730 31.2
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 5.5e-59 233.4 704 32.7
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 2.1e-58 231.5 698 31.1
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 3.6e-58 230.7 728 30.1
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 1.8e-57 228.4 730 31.1
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 5.1e-57 226.9 724 30.0
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 5.7e-56 223.4 675 31.0
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 2.8e-55 221.1 731 31.1
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 2.8e-55 221.1 733 30.2
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 8.2e-55 219.5 746 31.6
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 6.9e-54 216.5 691 30.1
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.2e-53 215.7 443 36.6
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 1.5e-53 215.3 735 29.8
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 5.9e-53 213.4 674 29.7
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 7.7e-53 213.0 707 30.3
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 7.2e-51 206.5 706 30.2
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 9.4e-51 206.1 688 29.5
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 7.9e-50 203.0 481 32.4
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 6.7e-49 199.9 464 34.5
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 5.7e-48 196.8 488 34.0
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 7.4e-48 196.4 741 29.4
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 9.7e-48 196.1 444 34.2
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.8e-47 194.5 471 34.0
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.7e-47 194.1 462 35.1
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 3.7e-47 194.1 708 31.5
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 5.3e-46 190.3 689 27.9
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 2.6e-45 188.0 713 30.2
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 2.9e-44 184.5 443 35.0
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.1e-43 182.6 400 35.0
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 2.1e-42 178.3 455 33.2
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 3.6e-42 177.6 418 35.4
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 1.3e-39 169.1 389 36.0
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 4.8e-39 167.2 328 35.4
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 1.1e-38 166.0 450 30.4
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.2e-37 162.5 437 31.8
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 7.2e-35 153.3 667 27.3
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 2.1e-34 151.8 697 27.8
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 2.7e-34 151.4 261 42.5
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 2.6e-32 144.8 320 35.6
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 5.7e-32 143.7 365 32.6
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.8e-31 141.4 234 39.7
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 3.1e-30 137.9 254 40.9
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 5.3e-30 137.1 349 35.0
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 7.0e-30 136.7 355 36.3
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 7.0e-30 136.7 378 31.7
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 1.6e-29 135.6 352 34.4
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 2.0e-29 135.2 355 35.5
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 3.5e-29 134.4 410 32.2
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 4.5e-29 134.0 345 33.9
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.0e-28 132.9 426 30.5
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 1.3e-28 132.5 700 25.7
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 8.5e-28 129.8 709 25.1
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.9e-27 128.6 381 33.3
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 3.0e-25 121.3 352 32.7
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 3.0e-25 121.3 352 32.7
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 8.8e-25 119.8 698 25.4
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 1.2e-24 119.4 352 33.8
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 1.2e-24 119.4 352 33.8
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 1.5e-24 119.0 363 33.6
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 2.0e-24 118.6 568 24.3
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 5.7e-24 117.1 358 31.0
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 9.8e-24 116.3 336 31.8
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 2.2e-23 115.2 287 36.9
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 4.9e-23 114.0 219 37.9
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 2.4e-22 111.7 255 36.5
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 2.7e-21 108.2 355 31.3
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 2.7e-21 108.2 353 30.9
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 4.5e-21 107.5 356 33.1
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 4.5e-21 107.5 356 33.1
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 4.5e-21 107.5 356 33.1
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.0e-20 106.3 254 33.9
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 2.9e-20 104.8 411 28.0
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 3.6e-18 97.8 406 28.3
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 5.7e-16 90.5 231 32.9
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 4.9e-15 87.4 115 44.3
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 3.5e-13 81.3 156 37.2
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 6.6e-12 77.0 209 33.5
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 3.3e-11 74.7 324 28.7
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 2.3e-09 68.6 55 61.8
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 2.0e-08 65.5 227 30.0
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 3.4e-08 64.7 289 26.6
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 7.5e-08 63.5 88 39.8
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 7.5e-08 63.5 309 25.9
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 2.9e-07 61.6 194 30.4
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 4.9e-07 60.8 209 31.1
MBI16_g35576_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.4e-06 59.3 80 41.2
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 2.4e-06 58.5 333 25.2
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 2.4e-06 58.5 333 25.2


User provided reference genes

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