Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 0.0e+00 1095.5 567 100.0
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.2e-298 1029.2 568 94.2
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.5e-298 1028.9 567 94.2
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 6.4e-249 864.0 570 78.8
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 3.0e-238 828.6 567 73.5
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 3.3e-237 825.1 566 75.1
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 5.6e-237 824.3 566 74.6
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 1.8e-235 819.3 570 74.2
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 1.7e-233 812.8 566 73.7
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 3.8e-233 811.6 561 73.3
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 6.5e-233 810.8 570 74.2
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 8.4e-233 810.4 567 72.8
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 2.5e-232 808.9 566 73.3
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 3.2e-232 808.5 566 73.1
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 3.2e-232 808.5 562 74.0
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 3.5e-231 805.1 552 74.6
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 8.7e-230 800.4 567 72.5
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 1.5e-229 799.7 572 71.2
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 8.2e-228 793.9 518 75.7
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 5.3e-227 791.2 576 70.8
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 1.5e-226 789.6 557 72.4
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 2.6e-226 788.9 498 77.3
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 4.5e-226 788.1 573 70.2
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 1.0e-225 786.9 574 72.8
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 1.3e-225 786.6 566 70.5
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 6.5e-225 784.3 567 72.7
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 1.4e-224 783.1 535 73.1
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 1.9e-224 782.7 573 69.6
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 3.2e-224 781.9 573 69.6
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 9.4e-224 780.4 561 70.2
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 1.6e-223 779.6 539 73.5
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 2.3e-222 775.8 571 69.7
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 8.8e-222 773.9 449 82.0
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 2.5e-221 772.3 569 70.8
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 2.5e-221 772.3 557 69.7
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 3.3e-221 771.9 569 70.8
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 5.7e-221 771.2 509 75.6
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 2.2e-220 769.2 566 69.8
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 2.2e-220 769.2 559 70.3
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 8.2e-220 767.3 567 71.8
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 8.2e-220 767.3 524 73.1
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 2.4e-219 765.8 543 69.8
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.4e-219 765.8 523 73.2
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 2.4e-219 765.8 559 70.5
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 4.1e-219 765.0 509 74.5
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 6.9e-219 764.2 539 70.3
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 1.2e-218 763.5 567 69.7
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 1.2e-218 763.5 483 78.1
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 1.5e-218 763.1 554 69.7
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 2.0e-218 762.7 559 70.1
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 3.4e-218 761.9 564 69.9
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 7.7e-218 760.8 557 70.4
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 6.5e-217 757.7 559 69.8
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 1.4e-216 756.5 503 75.0
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 2.5e-216 755.7 510 73.5
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 4.2e-216 755.0 482 77.2
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 9.4e-216 753.8 554 69.9
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 3.6e-215 751.9 562 68.7
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 7.9e-215 750.7 550 70.0
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 3.0e-214 748.8 569 67.5
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 5.1e-214 748.0 542 69.6
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 5.1e-214 748.0 536 71.3
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 8.8e-214 747.3 442 81.0
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 1.5e-213 746.5 531 71.6
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 4.4e-213 745.0 549 69.4
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 5.7e-213 744.6 546 68.9
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 5.7e-213 744.6 538 70.1
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 9.7e-213 743.8 533 72.4
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 1.3e-212 743.4 512 73.8
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 1.7e-212 743.0 538 69.9
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 2.2e-212 742.7 525 71.6
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 2.8e-212 742.3 445 78.7
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 2.8e-212 742.3 538 69.9
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 2.8e-212 742.3 488 73.4
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 1.1e-211 740.3 526 70.0
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.1e-211 740.3 539 70.1
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 3.1e-211 738.8 454 78.4
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 4.1e-211 738.4 515 71.8
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 5.3e-211 738.0 544 68.6
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 7.0e-211 737.6 499 73.3
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 5.9e-210 734.6 578 68.9
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 5.0e-209 731.5 470 76.0
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 6.5e-209 731.1 535 67.7
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 5.5e-208 728.0 538 69.3
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 7.2e-208 727.6 560 67.1
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 3.0e-206 722.2 453 75.5
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 8.8e-206 720.7 460 75.9
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 1.5e-205 719.9 586 65.7
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 1.5e-205 719.9 454 75.8
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 1.8e-203 713.0 487 71.7
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 2.4e-203 712.6 516 69.6
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 2.4e-203 712.6 457 74.0
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 3.1e-203 712.2 514 70.6
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 2.0e-202 709.5 539 67.5
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 2.9e-201 705.7 422 78.7
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 6.5e-201 704.5 628 59.4
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 3.6e-191 672.2 557 66.6
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 3.4e-181 639.0 372 82.3
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 2.2e-180 636.3 450 67.8
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 8.0e-175 617.8 418 72.2
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 6.0e-162 575.1 386 74.6
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 6.4e-156 555.1 434 61.3
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 1.4e-155 553.9 448 59.4
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 6.6e-153 545.0 422 67.8
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 1.2e-149 534.3 381 70.9
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 1.4e-147 527.3 437 57.9
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 8.7e-137 491.5 443 55.1
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 9.0e-118 428.3 437 50.3
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 1.5e-109 401.0 531 46.7
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 2.0e-109 400.6 493 45.0
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 4.5e-109 399.4 449 49.7
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 2.9e-108 396.7 446 49.6
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.1e-107 394.8 449 49.0
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 3.3e-104 383.3 477 43.8
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 4.8e-103 379.4 255 74.1
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 3.8e-100 369.8 570 43.7
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 1.5e-96 357.8 522 43.5
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.7e-92 344.4 560 42.3
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 2.3e-81 307.4 176 81.8
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 2.6e-80 303.9 481 38.3
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 3.6e-74 283.5 169 78.7
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 3.5e-53 213.8 218 61.5
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 2.0e-48 198.0 162 64.8
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.2e-37 162.2 131 64.9
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 2.7e-37 161.0 138 60.1
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 6.0e-29 133.3 86 75.6
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 8.7e-28 129.4 105 61.0
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 7.6e-24 116.3 125 46.4
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 8.4e-23 112.8 105 61.0
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 7.4e-19 99.8 58 82.8
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 1.6e-13 82.0 132 43.2
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 1.3e-12 79.0 148 45.9
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 1.9e-11 75.1 134 40.3
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 9.6e-11 72.8 140 43.6
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 1.4e-06 58.9 38 71.1
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 2.5e-06 58.2 130 43.1


User provided reference genes

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