Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 1.4e-195 686.0 340 100.0
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 7.7e-189 663.7 340 96.2
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 4.5e-157 558.1 340 79.7
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 2.2e-156 555.8 341 80.1
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 2.2e-156 555.8 341 80.1
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.9e-156 555.4 340 79.4
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 3.8e-156 555.1 340 78.8
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 1.8e-153 546.2 340 78.5
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 2.3e-153 545.8 341 78.9
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 3.1e-150 535.4 341 74.8
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 9.1e-150 533.9 344 76.5
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.9e-147 526.2 307 82.7
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 7.2e-147 524.2 340 75.6
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 7.5e-144 514.2 344 75.3
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.8e-142 509.6 342 74.0
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 5.4e-142 508.1 346 72.5
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.2e-141 506.9 346 73.1
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 1.6e-141 506.5 340 73.8
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 7.8e-141 504.2 339 71.7
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 7.8e-141 504.2 345 71.9
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 1.3e-140 503.4 346 72.5
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.9e-139 499.6 342 72.2
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 4.3e-139 498.4 306 76.5
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 7.3e-139 497.7 321 74.1
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 2.8e-138 495.7 331 74.6
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.0e-137 493.8 329 73.3
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 1.4e-137 493.4 331 73.4
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 2.3e-137 492.7 346 70.5
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 2.3e-137 492.7 308 76.9
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 3.1e-137 492.3 346 70.5
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 4.0e-137 491.9 348 69.3
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 8.9e-137 490.7 347 70.0
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 8.9e-137 490.7 324 75.0
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 2.6e-136 489.2 336 71.4
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 3.4e-136 488.8 340 70.9
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 3.4e-136 488.8 306 76.8
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 3.4e-136 488.8 348 69.3
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 4.4e-136 488.4 332 73.2
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 5.8e-136 488.0 346 70.2
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.8e-136 488.0 346 70.2
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.8e-136 488.0 346 69.9
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 7.5e-136 487.6 334 71.0
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 9.8e-136 487.3 373 66.2
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 9.8e-136 487.3 330 72.4
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 9.8e-136 487.3 346 70.2
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 1.7e-135 486.5 306 75.2
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 2.2e-135 486.1 333 71.8
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 2.2e-135 486.1 376 65.4
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 2.2e-135 486.1 307 75.6
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 6.4e-135 484.6 306 75.2
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 8.3e-135 484.2 347 68.6
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 2.4e-134 482.6 306 75.2
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 9.2e-134 480.7 325 73.2
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 1.6e-133 479.9 324 73.1
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 3.5e-133 478.8 338 69.5
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 3.5e-133 478.8 337 69.4
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 3.5e-133 478.8 319 72.4
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 7.8e-133 477.6 343 69.7
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.7e-132 476.5 350 68.3
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 2.3e-132 476.1 352 68.8
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 2.3e-132 476.1 347 67.7
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 3.9e-132 475.3 339 70.2
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 8.6e-132 474.2 343 68.8
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.1e-131 473.8 309 73.8
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 3.3e-131 472.2 312 74.0
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 3.3e-131 472.2 321 71.3
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 7.3e-131 471.1 315 70.8
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 9.5e-131 470.7 320 72.2
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 1.2e-130 470.3 342 69.3
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 1.2e-130 470.3 345 67.5
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 2.8e-130 469.2 347 66.6
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 3.6e-130 468.8 345 68.4
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 3.6e-130 468.8 314 70.1
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 1.4e-129 466.8 345 66.4
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 2.3e-129 466.1 346 66.2
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 3.1e-129 465.7 337 67.7
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 5.2e-129 464.9 286 76.2
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 1.2e-128 463.8 304 72.7
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.5e-128 463.4 305 73.8
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 4.4e-128 461.8 350 67.4
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 5.8e-128 461.5 306 72.9
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 4.9e-127 458.4 344 65.7
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 1.4e-126 456.8 306 71.2
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 1.0e-124 450.7 340 64.1
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 3.3e-123 445.7 284 76.8
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 3.6e-122 442.2 334 64.4
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 3.1e-121 439.1 346 62.7
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 6.8e-121 438.0 310 69.0
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 6.8e-121 438.0 322 67.7
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 8.9e-121 437.6 279 73.5
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 2.6e-120 436.0 356 62.1
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 9.9e-120 434.1 307 68.4
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 1.7e-119 433.3 378 58.2
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.2e-119 433.0 285 73.7
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.9e-118 429.9 344 65.1
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 4.1e-118 428.7 319 67.4
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 2.1e-117 426.4 327 67.9
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 3.5e-117 425.6 280 72.5
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 1.7e-116 423.3 298 70.5
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 2.3e-116 422.9 350 62.0
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.5e-115 420.2 327 62.4
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 7.3e-115 417.9 311 65.3
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 2.1e-114 416.4 340 63.2
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 3.1e-113 412.5 309 67.3
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 5.2e-113 411.8 354 62.4
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 5.2e-113 411.8 354 62.7
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 5.2e-113 411.8 305 65.6
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 8.9e-113 411.0 310 68.1
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 2.6e-112 409.5 325 62.5
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 9.9e-112 407.5 318 61.9
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 1.7e-111 406.8 293 70.3
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 2.4e-110 402.9 306 61.8
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 5.4e-110 401.7 307 62.5
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 7.1e-110 401.4 310 61.6
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 2.7e-109 399.4 310 61.6
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 4.6e-109 398.7 310 61.6
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 4.6e-109 398.7 308 61.7
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.3e-108 397.1 310 61.0
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 2.3e-108 396.4 310 61.3
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 5.1e-108 395.2 310 61.3
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 5.1e-108 395.2 310 61.3
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 5.6e-107 391.7 310 60.6
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 9.3e-102 374.4 282 62.1
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.1e-99 367.5 229 76.9
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 4.3e-99 365.5 344 57.8
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 6.2e-98 361.7 374 52.1
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 3.1e-97 359.4 303 56.1
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 9.0e-97 357.8 303 56.4
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 4.5e-96 355.5 256 66.8
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 7.6e-96 354.8 306 55.2
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 2.2e-95 353.2 228 75.0
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.1e-94 350.9 251 68.1
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 2.4e-89 333.2 304 51.3
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 1.5e-88 330.5 321 52.3
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 7.6e-88 328.2 309 53.1
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 2.1e-82 310.1 334 47.9
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 4.1e-81 305.8 235 62.6
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 1.9e-78 297.0 318 53.8
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 9.3e-78 294.7 281 53.4
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.0e-76 291.2 213 70.4
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 4.2e-70 269.2 164 78.7
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 3.8e-55 219.5 140 77.1
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 1.2e-53 214.5 163 60.7
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 1.2e-53 214.5 163 60.7
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.7e-47 194.1 130 75.4
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.5e-46 190.3 111 81.1
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 2.4e-41 173.7 324 32.1
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 5.9e-40 169.1 197 48.7
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 2.5e-38 163.7 109 77.1
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 2.3e-36 157.1 313 33.5
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 4.1e-33 146.4 164 50.0
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 1.3e-31 141.4 303 30.7
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 9.2e-25 118.6 171 41.5
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 9.2e-25 118.6 359 30.1
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 9.5e-22 108.6 85 62.4
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 1.8e-20 104.4 286 28.3
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 3.3e-14 83.6 105 42.9
AUR62010421 Chenopodium quinoa HOM05D000030 ORTHO05D000031 7.3e-06 55.8 37 67.6


User provided reference genes

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