Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 1.4e-62 242.7 111 100.0
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 8.1e-39 163.7 114 71.1
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 3.7e-31 138.3 109 61.5
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 1.7e-28 129.4 112 58.9
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 4.5e-21 104.8 107 48.6
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 8.4e-20 100.5 108 49.1
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 5.5e-19 97.8 108 45.4
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 2.7e-18 95.5 105 48.6
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 2.7e-18 95.5 79 54.4
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 1.0e-17 93.6 103 51.5
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.3e-17 93.2 116 43.1
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 2.3e-17 92.4 112 45.5
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 3.0e-17 92.0 92 50.0
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 8.7e-17 90.5 108 45.4
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 1.1e-16 90.1 116 42.2
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 1.5e-16 89.7 106 45.3
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 1.5e-16 89.7 72 62.5
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 1.9e-16 89.4 99 47.5
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 3.3e-16 88.6 99 47.5
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 4.3e-16 88.2 91 47.3
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 4.3e-16 88.2 70 58.6
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 7.4e-16 87.4 72 59.7
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 7.4e-16 87.4 93 50.5
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 7.4e-16 87.4 93 49.5
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 1.6e-15 86.3 72 58.3
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.6e-15 86.3 98 49.0
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 2.8e-15 85.5 93 49.5
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 3.7e-15 85.1 62 62.9
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 4.8e-15 84.7 116 42.2
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 4.8e-15 84.7 60 58.3
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 6.3e-15 84.3 55 63.6
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 8.2e-15 84.0 71 53.5
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 8.2e-15 84.0 106 43.4
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.1e-14 83.6 107 46.7
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 1.1e-14 83.6 103 44.7
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 1.1e-14 83.6 100 45.0
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 1.1e-14 83.6 70 55.7
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.4e-14 83.2 99 44.4
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 1.8e-14 82.8 90 51.1
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 1.8e-14 82.8 95 45.3
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 1.8e-14 82.8 113 44.2
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 1.8e-14 82.8 69 52.2
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 2.4e-14 82.4 50 66.0
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 2.4e-14 82.4 65 55.4
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 3.1e-14 82.0 93 47.3
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 4.1e-14 81.6 49 67.3
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 4.1e-14 81.6 99 46.5
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 4.1e-14 81.6 99 46.5
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 4.1e-14 81.6 102 45.1
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 4.1e-14 81.6 98 38.8
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 4.1e-14 81.6 98 38.8
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 4.1e-14 81.6 108 44.4
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 5.3e-14 81.3 53 62.3
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 5.3e-14 81.3 53 62.3
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 5.3e-14 81.3 85 50.6
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 6.9e-14 80.9 64 54.7
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 6.9e-14 80.9 102 41.2
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 6.9e-14 80.9 94 43.6
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 9.0e-14 80.5 103 42.7
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 9.0e-14 80.5 63 58.7
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 9.0e-14 80.5 100 44.0
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 9.0e-14 80.5 109 43.1
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 9.0e-14 80.5 101 45.5
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 1.2e-13 80.1 102 41.2
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 1.2e-13 80.1 102 41.2
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 1.2e-13 80.1 74 54.1
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 1.5e-13 79.7 101 41.6
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 1.5e-13 79.7 50 60.0
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 1.5e-13 79.7 102 44.1
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 1.5e-13 79.7 102 44.1
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.0e-13 79.3 49 65.3
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.0e-13 79.3 49 65.3
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 2.6e-13 79.0 49 63.3
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 2.6e-13 79.0 58 56.9
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 3.4e-13 78.6 108 44.4
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 4.5e-13 78.2 101 44.6
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 4.5e-13 78.2 101 44.6
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 4.5e-13 78.2 61 54.1
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 4.5e-13 78.2 108 44.4
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 7.6e-13 77.4 98 39.8
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 7.6e-13 77.4 108 44.4
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.0e-12 77.0 63 50.8
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.3e-12 76.6 108 43.5
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 1.7e-12 76.3 62 58.1
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 1.7e-12 76.3 101 48.5
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 1.7e-12 76.3 101 43.6
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.9e-12 75.5 108 45.4
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.9e-12 75.5 63 54.0
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 2.9e-12 75.5 46 63.0
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 8.5e-12 73.9 47 63.8
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 8.5e-12 73.9 60 53.3
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 1.1e-11 73.6 46 65.2
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 1.4e-11 73.2 96 38.5
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 1.4e-11 73.2 53 56.6
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 4.2e-11 71.6 65 47.7
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 7.2e-11 70.9 81 44.4
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 9.4e-11 70.5 78 46.2
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 1.6e-10 69.7 76 42.1
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 2.7e-10 68.9 94 44.7
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 2.7e-10 68.9 94 35.1
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 3.6e-10 68.6 86 39.5
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 4.6e-10 68.2 59 47.5
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 4.6e-10 68.2 45 62.2
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 6.1e-10 67.8 42 57.1
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 7.9e-10 67.4 42 59.5
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.0e-09 67.0 91 42.9
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 1.0e-09 67.0 92 37.0
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 1.8e-09 66.2 63 47.6
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 3.0e-09 65.5 91 39.6
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 3.9e-09 65.1 47 53.2
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 3.9e-09 65.1 53 49.1
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 5.1e-09 64.7 42 57.1
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 5.1e-09 64.7 36 66.7
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 6.7e-09 64.3 44 54.5
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 1.1e-08 63.5 56 46.4
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 1.5e-08 63.2 48 50.0
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 1.5e-08 63.2 39 61.5
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 1.9e-08 62.8 48 54.2
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 3.3e-08 62.0 59 47.5
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 1.7e-07 59.7 39 53.8
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 2.2e-07 59.3 39 56.4
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 3.7e-07 58.5 60 46.7
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 4.8e-07 58.2 37 56.8
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 1.1e-06 57.0 48 50.0
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 1.4e-06 56.6 57 45.6
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 2.4e-06 55.8 37 56.8
Aqoxy6G02750 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 3.1e-06 55.5 56 48.2
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 4.1e-06 55.1 70 37.1
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 6.9e-06 54.3 48 50.0


User provided reference genes

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