Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 1.6e-91 339.3 163 100.0
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 4.2e-76 288.1 159 86.2
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 3.0e-66 255.4 147 80.3
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 1.1e-63 246.9 145 81.4
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 9.1e-63 243.8 153 73.9
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 1.5e-62 243.0 151 78.1
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 3.4e-62 241.9 161 76.4
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 3.4e-62 241.9 149 77.9
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 1.7e-61 239.6 158 71.5
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 2.2e-61 239.2 145 77.2
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 2.9e-61 238.8 145 77.9
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 3.8e-61 238.4 149 75.2
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 3.8e-61 238.4 145 77.2
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 5.0e-61 238.0 142 77.5
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 8.5e-61 237.3 142 78.2
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 1.4e-60 236.5 146 75.3
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 3.2e-60 235.3 162 73.5
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 4.2e-60 235.0 144 75.7
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 5.5e-60 234.6 146 75.3
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.2e-59 233.4 147 74.8
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 3.6e-59 231.9 159 67.3
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 4.7e-59 231.5 149 76.5
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 4.7e-59 231.5 151 73.5
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 4.7e-59 231.5 147 76.2
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 6.1e-59 231.1 145 74.5
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 6.1e-59 231.1 148 73.6
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 1.4e-58 229.9 145 74.5
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 1.8e-58 229.6 151 73.5
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 3.9e-58 228.4 159 66.0
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 3.9e-58 228.4 123 82.9
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 5.1e-58 228.0 154 72.1
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 5.1e-58 228.0 158 66.5
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.0e-57 226.1 149 72.5
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 2.0e-57 226.1 148 72.3
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.6e-57 225.7 146 71.2
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 2.6e-57 225.7 144 72.2
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 4.4e-57 224.9 151 70.2
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 5.7e-57 224.6 146 71.9
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 5.7e-57 224.6 134 73.9
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 5.7e-57 224.6 147 70.1
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 5.7e-57 224.6 141 72.3
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 7.4e-57 224.2 139 74.8
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 1.3e-56 223.4 141 71.6
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 1.3e-56 223.4 129 77.5
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.8e-56 222.2 142 74.6
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 4.8e-56 221.5 141 70.9
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 4.8e-56 221.5 148 69.6
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 6.3e-56 221.1 161 65.8
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 6.3e-56 221.1 138 76.1
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 8.2e-56 220.7 141 73.0
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 1.4e-55 219.9 141 70.9
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 1.4e-55 219.9 164 68.3
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 1.4e-55 219.9 141 68.8
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 1.8e-55 219.5 142 70.4
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 2.4e-55 219.2 137 70.8
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 2.4e-55 219.2 141 70.2
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 4.1e-55 218.4 139 69.8
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 4.1e-55 218.4 139 69.8
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 4.1e-55 218.4 143 74.1
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 5.3e-55 218.0 145 70.3
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 5.3e-55 218.0 142 69.7
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 7.0e-55 217.6 141 68.8
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 9.1e-55 217.2 143 70.6
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 9.1e-55 217.2 143 71.3
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 9.1e-55 217.2 157 65.6
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 1.2e-54 216.9 135 72.6
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 1.2e-54 216.9 134 72.4
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 2.0e-54 216.1 136 73.5
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 2.0e-54 216.1 164 64.6
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 2.6e-54 215.7 140 68.6
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 1.0e-53 213.8 170 60.6
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.7e-53 213.0 146 67.1
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.7e-53 213.0 140 68.6
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 2.2e-53 212.6 140 71.4
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 2.2e-53 212.6 149 68.5
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 2.9e-53 212.2 158 63.3
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 3.8e-53 211.8 146 65.8
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.8e-53 211.8 160 61.9
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 5.0e-53 211.5 135 70.4
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 2.5e-52 209.1 146 66.4
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 3.2e-52 208.8 147 67.3
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 5.5e-52 208.0 152 62.5
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 3.6e-51 205.3 135 67.4
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 2.3e-50 202.6 122 73.8
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 2.3e-50 202.6 147 63.9
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 3.0e-50 202.2 109 83.5
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 3.9e-50 201.8 139 70.5
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 1.5e-49 199.9 139 61.9
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.0e-49 199.5 135 67.4
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 5.7e-49 198.0 119 72.3
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 5.7e-49 198.0 119 72.3
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 9.7e-49 197.2 149 61.1
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 1.7e-48 196.4 163 58.3
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 3.7e-48 195.3 141 62.4
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 6.3e-48 194.5 119 74.8
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 8.2e-48 194.1 124 71.8
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.4e-47 193.4 125 71.2
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 1.4e-47 193.4 162 56.8
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 2.4e-47 192.6 149 59.7
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.7e-45 186.4 154 65.6
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 2.1e-35 152.9 101 70.3
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 1.8e-34 149.8 95 72.6
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 5.2e-34 148.3 122 59.8
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 3.4e-33 145.6 117 58.1
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 1.7e-32 143.3 118 53.4
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 5.4e-31 138.3 75 84.0
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 4.2e-28 128.6 117 45.3
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 1.2e-27 127.1 147 47.6
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 2.1e-27 126.3 96 56.2
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 1.8e-26 123.2 135 49.6
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 3.0e-26 122.5 78 71.8
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 3.0e-26 122.5 92 59.8
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 5.2e-26 121.7 92 59.8
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 4.4e-25 118.6 89 55.1
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 2.2e-24 116.3 121 50.4
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 1.4e-23 113.6 93 50.5
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 2.0e-22 109.8 71 73.2
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 5.6e-20 101.7 92 51.1
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 7.3e-20 101.3 93 50.5
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 6.1e-19 98.2 99 44.4
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 9.2e-15 84.3 67 58.2
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 5.0e-13 78.6 65 56.9
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 4.3e-12 75.5 47 66.0
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 8.0e-11 71.2 104 36.5
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 2.0e-09 66.6 40 65.0
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.6e-09 66.2 65 50.8
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 1.3e-08 63.9 37 73.0
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 4.9e-08 62.0 88 38.6
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 6.4e-08 61.6 50 54.0


User provided reference genes

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