Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 9.6e-200 699.9 340 100.0
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 5.0e-180 634.4 340 90.6
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.1e-162 575.9 334 85.6
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 2.0e-157 559.3 349 78.8
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 5.2e-153 544.7 345 76.5
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 7.0e-150 534.3 349 74.5
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 2.0e-149 532.7 359 73.3
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 1.0e-148 530.4 369 72.6
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 3.8e-148 528.5 349 74.5
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 8.6e-148 527.3 358 72.3
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 5.5e-147 524.6 346 74.6
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 7.2e-147 524.2 346 74.6
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 7.2e-147 524.2 346 73.4
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 8.0e-146 520.8 344 73.8
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.8e-145 519.6 365 71.2
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.3e-145 519.2 366 71.3
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 2.0e-144 516.2 357 71.4
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 2.0e-144 516.2 346 73.4
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 2.6e-144 515.8 347 73.2
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.6e-144 515.8 351 72.1
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.4e-144 515.4 351 72.1
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 4.4e-144 515.0 359 71.0
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 7.5e-144 514.2 358 71.5
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 1.3e-143 513.5 345 72.2
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 1.7e-143 513.1 360 71.1
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 2.8e-143 512.3 343 72.0
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 6.3e-143 511.1 355 70.1
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 1.8e-142 509.6 365 70.4
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.4e-142 509.2 381 68.5
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 3.2e-142 508.8 352 72.2
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 9.2e-142 507.3 352 72.4
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.2e-141 506.9 366 69.7
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 1.2e-141 506.9 351 73.2
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.0e-141 506.1 358 70.1
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.0e-141 506.1 358 70.1
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 2.0e-141 506.1 316 81.0
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 2.7e-141 505.8 354 71.2
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.7e-141 505.8 357 70.0
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 3.5e-141 505.4 343 71.4
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 7.8e-141 504.2 351 70.9
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 1.3e-140 503.4 363 68.9
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 1.7e-140 503.1 360 70.8
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 5.0e-140 501.5 344 71.8
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 6.6e-140 501.1 360 71.4
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.5e-139 500.0 338 72.2
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.9e-139 499.6 352 70.2
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 2.5e-139 499.2 353 71.7
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.3e-139 498.4 357 68.9
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 5.6e-139 498.0 345 70.1
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 5.6e-139 498.0 361 69.3
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 7.3e-139 497.7 363 69.1
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.6e-138 496.5 351 68.9
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 1.6e-138 496.5 354 70.1
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 1.6e-138 496.5 363 67.8
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 4.7e-138 495.0 359 67.1
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 1.0e-137 493.8 364 68.4
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 1.8e-137 493.0 344 71.2
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 6.8e-137 491.1 362 68.0
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.8e-137 491.1 354 68.6
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 8.9e-137 490.7 373 67.6
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 1.5e-136 490.0 371 68.2
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 1.5e-136 490.0 364 67.0
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.5e-136 490.0 385 66.2
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.6e-136 489.2 348 69.8
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 9.8e-136 487.3 353 70.3
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 9.8e-136 487.3 383 64.8
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.3e-135 486.9 345 69.3
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 1.7e-135 486.5 341 70.4
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 1.7e-135 486.5 351 70.1
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 2.9e-135 485.7 346 69.7
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 2.9e-135 485.7 355 68.7
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.7e-135 485.3 359 68.5
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 3.7e-135 485.3 381 66.1
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 8.3e-135 484.2 359 68.5
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.4e-134 483.4 356 68.8
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 1.9e-134 483.0 354 68.6
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 3.2e-134 482.3 353 67.7
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 2.0e-133 479.6 355 67.9
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 3.5e-133 478.8 354 68.9
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 3.5e-133 478.8 355 69.3
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 4.6e-133 478.4 341 70.4
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 4.6e-133 478.4 355 67.6
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 1.0e-132 477.2 354 69.5
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 2.3e-132 476.1 354 68.9
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 1.5e-131 473.4 345 70.1
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 3.3e-131 472.2 354 68.4
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 5.6e-131 471.5 348 69.8
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 7.3e-131 471.1 354 67.2
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 2.1e-130 469.5 355 68.5
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 2.1e-130 469.5 339 69.0
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 3.6e-130 468.8 341 68.9
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 6.2e-130 468.0 369 65.6
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 8.0e-130 467.6 374 66.0
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 1.4e-129 466.8 347 69.2
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 1.4e-129 466.8 347 69.2
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.4e-129 466.8 360 66.4
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.2e-128 463.8 347 69.2
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 3.4e-128 462.2 347 68.6
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.7e-127 458.8 362 67.1
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 4.9e-127 458.4 346 67.6
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 4.9e-127 458.4 338 68.9
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 1.9e-126 456.4 352 66.5
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 1.7e-124 449.9 360 63.1
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 1.1e-123 447.2 382 61.3
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.5e-123 446.8 347 64.8
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 3.3e-123 445.7 332 66.3
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 4.3e-123 445.3 326 69.0
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 5.6e-123 444.9 349 64.8
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 7.3e-123 444.5 340 67.6
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 2.1e-122 443.0 342 67.8
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 2.8e-122 442.6 354 65.8
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.8e-121 439.9 384 59.1
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.5e-120 436.8 306 69.9
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.4e-120 435.3 344 64.8
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 4.4e-120 435.3 344 64.8
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 1.7e-119 433.3 356 60.7
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 1.4e-118 430.3 322 66.8
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.5e-117 425.6 361 61.2
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 4.6e-117 425.2 523 47.8
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 2.3e-116 422.9 418 55.5
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 6.6e-116 421.4 337 64.1
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 9.6e-115 417.5 362 59.4
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 2.8e-114 416.0 377 57.8
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 3.6e-114 415.6 329 67.5
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 4.0e-113 412.1 385 56.9
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 4.0e-113 412.1 363 59.8
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.9e-111 406.0 427 52.7
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 6.0e-109 398.3 364 57.4
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.6e-106 390.2 332 61.1
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.3e-103 380.6 308 64.0
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 3.8e-103 379.0 370 56.5
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 3.6e-98 362.5 372 53.0
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 1.7e-95 353.6 334 56.9
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 4.5e-88 328.9 352 52.0
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 5.1e-84 315.5 382 45.8
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 4.3e-83 312.4 383 48.0
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 6.9e-81 305.1 241 62.2
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 6.3e-74 282.0 305 54.8
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.5e-72 277.3 383 43.6
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 4.2e-70 269.2 172 73.8
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 1.1e-67 261.2 240 59.6
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 1.1e-67 261.2 240 59.6
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 2.0e-67 260.4 342 41.8
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 5.7e-67 258.8 380 43.4
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 8.2e-66 255.0 227 63.0
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.8e-65 253.8 204 65.7
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 3.8e-63 246.1 176 63.6
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.0e-60 238.0 207 63.3
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.4e-60 237.7 403 37.5
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 8.2e-58 228.4 179 65.4
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 6.1e-53 212.2 166 65.7
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 8.2e-50 201.8 135 75.6
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 1.8e-44 184.1 128 64.1
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.0e-36 158.3 100 73.0
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.3e-34 151.4 364 31.6
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 7.0e-33 145.6 122 58.2
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 9.1e-33 145.2 346 33.5
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 2.9e-26 123.6 88 65.9
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 8.3e-18 95.5 81 61.7
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 5.4e-17 92.8 63 69.8
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.1e-06 58.5 29 79.3


User provided reference genes

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