Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 0.0e+00 1120.1 587 100.0
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 3.8e-236 821.6 730 66.3
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 2.1e-186 656.4 760 55.3
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 7.4e-139 498.4 620 54.0
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 3.2e-126 456.4 715 44.9
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 6.7e-124 448.7 696 45.3
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 3.1e-97 360.1 718 39.3
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 4.2e-94 349.7 745 38.1
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 6.3e-90 335.9 740 38.6
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 7.7e-88 328.9 746 36.7
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 2.2e-87 327.4 705 37.0
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 4.8e-82 309.7 692 37.3
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 1.8e-81 307.8 698 36.2
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.4e-81 307.4 725 37.2
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 3.1e-81 307.0 725 37.2
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.6e-80 304.7 754 36.1
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 2.7e-80 303.9 730 36.0
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 2.7e-80 303.9 738 35.5
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 2.7e-80 303.9 699 36.9
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.8e-79 300.1 796 34.0
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 5.0e-79 299.7 746 36.9
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.5e-78 297.4 755 35.8
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 5.5e-78 296.2 752 35.9
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.5e-75 288.1 771 33.7
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.3e-74 285.0 767 35.1
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 5.9e-72 276.2 572 36.5
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 7.7e-72 275.8 680 36.5
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 5.0e-71 273.1 750 33.2
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 3.3e-70 270.4 701 34.8
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.7e-69 266.5 738 33.6
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 6.1e-69 266.2 529 38.9
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 1.5e-67 261.5 725 32.1
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.4e-67 260.4 787 31.1
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 8.3e-66 255.8 738 33.3
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.1e-65 255.4 771 31.9
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 4.1e-65 253.4 749 31.9
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 4.1e-65 253.4 503 39.4
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 1.2e-64 251.9 512 39.3
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 1.5e-62 245.0 739 30.9
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 3.3e-62 243.8 713 33.0
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 7.3e-62 242.7 721 30.7
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 2.1e-61 241.1 766 31.7
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 1.0e-60 238.8 700 32.6
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 3.1e-60 237.3 564 35.8
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 3.1e-60 237.3 503 37.4
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 5.2e-60 236.5 713 32.1
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 5.2e-60 236.5 729 30.5
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 4.4e-59 233.4 660 32.6
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.4e-59 233.4 736 31.7
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 4.4e-59 233.4 729 30.5
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 7.5e-59 232.6 827 30.6
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 2.9e-58 230.7 720 30.4
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 3.7e-58 230.3 667 33.6
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 3.2e-57 227.3 346 43.1
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 5.4e-57 226.5 729 31.7
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 9.2e-57 225.7 734 29.2
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 1.2e-56 225.3 737 30.4
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 1.2e-56 225.3 736 29.8
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 2.3e-55 221.1 741 30.9
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 3.9e-55 220.3 737 29.9
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 2.5e-54 217.6 727 32.7
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 1.6e-53 214.9 750 29.6
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 2.8e-53 214.2 693 31.5
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 3.1e-52 210.7 732 30.7
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 2.6e-51 207.6 762 30.8
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 2.6e-51 207.6 744 30.1
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 5.8e-51 206.5 554 33.8
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 7.5e-51 206.1 633 31.1
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 1.3e-50 205.3 769 30.8
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 1.3e-50 205.3 689 33.4
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 4.9e-50 203.4 473 36.2
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 3.2e-49 200.7 186 61.8
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 4.1e-49 200.3 761 30.5
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 2.1e-48 198.0 611 31.4
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 2.1e-48 198.0 603 32.0
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 2.7e-48 197.6 175 61.7
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 4.6e-48 196.8 185 57.8
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 1.0e-47 195.7 760 29.7
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 3.0e-47 194.1 715 30.3
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 1.9e-46 191.4 706 30.2
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 5.6e-46 189.9 754 29.6
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.2e-45 188.7 513 34.3
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 1.2e-45 188.7 658 31.5
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 1.6e-45 188.3 730 31.1
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 4.7e-45 186.8 719 29.8
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 1.4e-44 185.3 187 55.1
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 2.3e-44 184.5 837 27.4
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 2.3e-44 184.5 645 30.7
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 5.2e-44 183.3 624 29.8
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 3.4e-43 180.6 820 27.1
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 5.8e-43 179.9 619 29.4
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 7.6e-43 179.5 687 30.6
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 9.9e-43 179.1 617 29.7
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 8.4e-42 176.0 619 29.1
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 8.4e-42 176.0 731 28.3
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 7.1e-41 172.9 845 25.4
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 9.2e-41 172.6 185 52.4
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 4.6e-40 170.2 177 54.2
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 6.6e-39 166.4 828 27.3
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 1.9e-38 164.9 424 34.7
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 2.8e-37 161.0 659 30.0
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 1.1e-36 159.1 193 51.3
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 1.4e-36 158.7 740 28.4
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 8.9e-36 156.0 194 50.5
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 2.6e-35 154.5 821 26.3
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 4.4e-35 153.7 629 27.7
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 4.4e-35 153.7 585 29.9
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 6.4e-34 149.8 742 27.8
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 8.4e-34 149.4 662 28.9
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 5.4e-33 146.7 606 29.5
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 2.3e-31 141.4 177 48.6
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 3.0e-31 141.0 405 30.6
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 1.3e-29 135.6 441 30.2
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 1.8e-28 131.7 523 29.4
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 2.0e-27 128.3 91 68.1
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 1.6e-24 118.6 120 61.7
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 3.5e-24 117.5 262 35.9
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 1.0e-23 115.9 647 27.0
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 1.3e-23 115.5 392 32.9
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.9e-22 111.7 385 32.2
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.0e-20 104.0 407 30.0
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 2.7e-16 91.3 71 60.6
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 3.5e-16 90.9 135 44.4
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.1e-14 85.9 177 41.8
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.1e-12 79.3 92 51.1
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 1.8e-12 78.6 228 33.3
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 6.9e-12 76.6 85 47.1
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 4.5e-11 73.9 57 59.6
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 2.5e-09 68.2 45 68.9
vmacro01916 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 6.0e-08 63.5 137 36.5
Zm00001eb090710 Zea mays HOM05D004882 ORTHO05D005551 2.3e-07 61.6 154 34.4
Zm00001eb205120 Zea mays HOM05D004882 ORTHO05D005551 3.0e-07 61.2 128 34.4
SHI04903 Sapria himalayana HOM05D004882 ORTHO05D005551 2.5e-06 58.2 33 69.7
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 2.5e-06 58.2 65 44.6
Prupe.8G157000 Prunus persica HOM05D004882 ORTHO05D005551 3.3e-06 57.8 98 42.9
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 5.7e-06 57.0 65 43.1


User provided reference genes

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