Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 5.2e-51 204.9 180 100.0
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 3.6e-28 129.0 71 93.0
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 1.7e-25 120.2 150 84.7
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 1.2e-18 97.4 68 76.5
Manes.02G140201 Manihot esculenta HOM05D007144 ORTHO05D008709 1.5e-18 97.1 66 74.2
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 5.7e-18 95.1 71 70.4
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 3.7e-17 92.4 71 69.0
Manes.01G179700 Manihot esculenta HOM05D007144 ORTHO05D008709 4.9e-17 92.0 64 73.4
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 6.4e-17 91.7 63 74.6
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 8.3e-17 91.3 71 70.4
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 1.1e-16 90.9 71 70.4
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 1.1e-16 90.9 71 70.4
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 1.4e-16 90.5 71 69.0
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 2.4e-16 89.7 65 72.3
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 3.2e-16 89.4 71 63.4
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 4.1e-16 89.0 61 73.8
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 5.4e-16 88.6 61 70.5
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 7.0e-16 88.2 65 70.8
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 7.0e-16 88.2 71 62.0
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 1.2e-15 87.4 71 64.8
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 2.0e-15 86.7 69 68.1
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 2.0e-15 86.7 51 82.4
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 2.0e-15 86.7 51 82.4
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 2.0e-15 86.7 51 82.4
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 2.0e-15 86.7 71 67.6
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 2.7e-15 86.3 71 69.0
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 2.7e-15 86.3 71 64.8
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 3.5e-15 85.9 66 68.2
Cfa010657 Carpinus fangiana HOM05D007144 ORTHO05D008709 3.5e-15 85.9 65 69.2
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 3.5e-15 85.9 71 62.0
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 4.6e-15 85.5 141 76.6
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 4.6e-15 85.5 51 80.4
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 5.9e-15 85.1 61 70.5
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 7.8e-15 84.7 61 70.5
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 7.8e-15 84.7 74 59.5
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 7.8e-15 84.7 74 59.5
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 1.0e-14 84.3 71 62.0
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 1.0e-14 84.3 63 68.3
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 1.3e-14 84.0 56 73.2
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 1.7e-14 83.6 80 58.8
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 1.7e-14 83.6 61 68.9
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 1.7e-14 83.6 61 68.9
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 1.7e-14 83.6 71 59.2
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 3.0e-14 82.8 68 63.2
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 3.0e-14 82.8 67 62.7
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 3.0e-14 82.8 71 57.7
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 3.9e-14 82.4 70 60.0
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 5.0e-14 82.0 66 60.6
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 5.0e-14 82.0 70 57.1
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 6.6e-14 81.6 60 66.7
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 6.6e-14 81.6 66 68.2
MELO3C014563.2 Cucumis melo HOM05D007144 ORTHO05D008709 1.5e-13 80.5 63 61.9
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 1.5e-13 80.5 65 63.1
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 1.9e-13 80.1 51 72.5
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 2.5e-13 79.7 56 66.1
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 3.3e-13 79.3 51 70.6
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 5.6e-13 78.6 71 60.6
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 5.6e-13 78.6 59 64.4
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 7.3e-13 78.2 61 67.2
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 7.3e-13 78.2 53 75.5
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 9.5e-13 77.8 53 71.7
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 9.5e-13 77.8 53 73.6
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 1.2e-12 77.4 53 71.7
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 2.1e-12 76.6 60 66.7
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 2.1e-12 76.6 61 65.6
Rhsim13G0210700 Rhododendron simsii HOM05D007144 ORTHO05D008709 2.1e-12 76.6 56 71.4
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 3.6e-12 75.9 59 62.7
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 3.6e-12 75.9 53 69.8
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 3.6e-12 75.9 66 62.1
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 3.6e-12 75.9 71 54.9
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 3.6e-12 75.9 55 69.1
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 8.0e-12 74.7 53 69.8
CANSAT54G2482 Cannabis sativa HOM05D007144 ORTHO05D008709 8.0e-12 74.7 65 61.5
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 8.0e-12 74.7 51 68.6
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 8.0e-12 74.7 71 54.9
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 1.1e-11 74.3 65 56.9
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 1.4e-11 73.9 67 55.2
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 1.8e-11 73.6 59 67.8
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 2.3e-11 73.2 61 62.3
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 2.3e-11 73.2 61 62.3
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 2.3e-11 73.2 61 62.3
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 2.3e-11 73.2 61 62.3
TAR623G0360 Trochodendron aralioides HOM05D007144 ORTHO05D008709 6.8e-11 71.6 65 58.5
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 8.9e-11 71.2 71 53.5
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 8.9e-11 71.2 71 50.7
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 1.2e-10 70.9 46 67.4
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 1.5e-10 70.5 63 58.7
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 2.6e-10 69.7 63 57.1
Aa31LG3G14910 Aethionema arabicum HOM05D007144 ORTHO05D008709 7.5e-10 68.2 55 69.1
QL01p017309 Quercus lobata HOM05D007144 ORTHO05D008709 7.5e-10 68.2 55 63.6
Psat1g051560 Pisum sativum HOM05D007144 ORTHO05D008709 9.8e-10 67.8 61 55.7
Atru.chr4.1901 Acer truncatum HOM05D007144 ORTHO05D008709 3.7e-09 65.9 71 54.9
TWI23G1223 Tripterygium wilfordii HOM05D007144 ORTHO05D008709 8.3e-09 64.7 60 60.0
PGR102G1924 Punica granatum HOM05D007144 ORTHO05D008709 9.2e-08 61.2 54 59.3
Nn7g36693 Nelumbo nucifera HOM05D007144 ORTHO05D008709 3.5e-07 59.3 56 58.9
Phvul.006G021300 Phaseolus vulgaris HOM05D007144 ORTHO05D008709 6.0e-07 58.5 38 71.1
CBR_g48945 Chara braunii HOM05D007144 ORTHO05D008709 1.0e-06 57.8 59 47.5
GSVIVG01037268001 Vitis vinifera HOM05D007144 ORTHO05D008709 1.0e-06 57.8 51 56.9
Mapoly0026s0092 Marchantia polymorpha HOM05D007144 ORTHO05D008709 2.3e-06 56.6 50 56.0


User provided reference genes

Program Settings