Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 8.1e-200 700.3 371 100.0
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 6.7e-146 521.2 374 75.4
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.9e-141 505.8 373 77.7
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 8.2e-120 434.5 380 65.0
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 9.4e-116 421.0 380 64.7
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 1.3e-104 384.0 382 60.5
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 2.8e-104 382.9 378 59.8
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 1.6e-102 377.1 382 59.7
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 1.3e-101 374.0 379 59.6
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 3.3e-100 369.4 383 57.7
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.2e-96 356.7 393 55.5
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 8.3e-96 354.8 385 55.3
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 4.1e-95 352.4 417 53.5
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 2.3e-93 346.7 326 62.0
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 2.1e-91 340.1 416 50.7
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 8.0e-91 338.2 384 54.9
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.3e-90 336.7 386 54.7
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.6e-89 333.2 384 53.9
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 2.2e-88 330.1 398 52.0
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 1.1e-87 327.8 383 55.4
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 7.0e-87 325.1 421 48.9
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 1.6e-86 323.9 420 48.6
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.3e-85 320.1 387 52.5
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 8.6e-85 318.2 343 56.3
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-84 317.8 420 47.9
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.9e-84 317.0 370 52.2
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 5.6e-84 315.5 402 55.2
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 7.3e-84 315.1 393 50.6
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 7.3e-84 315.1 420 48.8
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.8e-83 313.2 384 49.7
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 6.2e-83 312.0 430 47.9
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 8.1e-83 311.6 383 51.2
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 1.1e-82 311.2 403 54.3
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 2.3e-82 310.1 382 51.0
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 8.9e-82 308.1 383 51.2
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 1.5e-81 307.4 380 51.1
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.4e-81 305.8 423 48.2
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.2e-80 303.5 425 47.1
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 2.2e-80 303.5 400 52.0
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.9e-80 303.1 389 50.6
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 2.9e-80 303.1 409 48.4
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 3.7e-80 302.8 388 49.7
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 3.7e-80 302.8 389 49.9
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 3.7e-80 302.8 389 49.9
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 4.9e-80 302.4 401 52.9
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 1.4e-79 300.8 393 47.6
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 5.4e-79 298.9 402 48.5
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 7.1e-79 298.5 404 50.7
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 1.2e-78 297.7 387 51.9
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 6.0e-78 295.4 384 47.1
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.8e-78 295.0 425 47.3
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.0e-77 294.7 382 50.8
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 2.3e-77 293.5 412 47.1
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.1e-76 291.2 391 48.6
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.2e-75 287.7 379 50.4
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 8.1e-75 285.0 385 49.9
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.1e-74 284.6 399 49.1
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 6.8e-74 282.0 378 48.4
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 2.0e-73 280.4 386 46.4
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 2.6e-73 280.0 381 49.1
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.2e-72 276.9 376 50.8
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.4e-71 274.2 404 47.0
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.2e-71 273.1 404 47.0
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 4.1e-71 272.7 394 46.4
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 4.1e-71 272.7 390 49.0
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 5.4e-71 272.3 419 44.6
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 7.1e-71 271.9 388 47.7
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 4.6e-70 269.2 387 47.5
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 4.6e-70 269.2 387 47.5
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.0e-69 268.1 393 45.5
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 5.1e-69 265.8 393 48.1
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 8.6e-69 265.0 387 47.0
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 8.6e-69 265.0 387 47.3
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 8.6e-69 265.0 397 45.3
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.5e-68 264.2 387 47.0
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 3.6e-67 259.6 396 42.4
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 6.2e-67 258.8 351 50.7
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 8.1e-67 258.5 387 46.5
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 2.4e-66 256.9 336 50.0
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 5.2e-66 255.8 384 45.8
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 6.9e-66 255.4 389 46.5
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.5e-65 254.2 378 46.0
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 2.0e-65 253.8 375 46.4
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 3.4e-65 253.1 405 44.9
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 4.4e-65 252.7 401 43.9
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.3e-64 251.1 386 46.9
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 1.3e-64 251.1 384 45.3
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 2.2e-64 250.4 398 45.2
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 2.9e-64 250.0 391 47.1
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 3.8e-64 249.6 402 43.8
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 6.4e-64 248.8 271 54.6
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.2e-62 244.6 389 42.7
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.6e-62 244.2 378 44.2
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 1.6e-62 244.2 394 44.9
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 2.1e-62 243.8 378 45.2
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 2.1e-62 243.8 376 44.9
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 2.7e-62 243.4 429 42.0
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.7e-62 243.4 377 44.0
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 4.6e-62 242.7 332 50.3
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 6.0e-62 242.3 393 44.5
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 3.0e-61 240.0 431 42.7
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 5.1e-61 239.2 403 44.9
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.5e-60 236.9 263 54.0
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 8.1e-59 231.9 381 44.1
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 7.6e-57 225.3 400 43.0
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 4.9e-56 222.6 410 41.0
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 1.9e-55 220.7 401 42.9
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 2.1e-54 217.2 323 47.1
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 5.1e-53 212.6 394 40.1
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 6.2e-51 205.7 278 49.6
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 2.4e-50 203.8 411 41.4
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 2.0e-49 200.7 409 41.3
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 3.4e-49 199.9 391 38.4
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 1.1e-47 194.9 409 41.1
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.2e-46 191.4 262 48.5
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 3.9e-45 186.4 418 32.8
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 7.4e-44 182.2 256 51.2
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 1.1e-36 158.3 249 40.2
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 3.3e-36 156.8 246 43.1
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 3.7e-35 153.3 494 30.8
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 6.3e-35 152.5 252 38.9
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 6.3e-35 152.5 250 42.0
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.4e-34 151.4 240 39.6
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 1.4e-34 151.4 242 44.2
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.8e-34 151.0 196 48.0
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 4.1e-34 149.8 251 39.4
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 9.0e-34 148.7 235 41.3
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 9.0e-34 148.7 371 32.3
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.5e-33 147.9 253 38.7
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 2.0e-33 147.5 234 43.6
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.9e-32 143.7 244 40.6
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.9e-32 143.7 252 40.1
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 5.0e-32 142.9 360 36.4
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 7.2e-31 139.0 194 44.8
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 9.3e-31 138.7 247 39.7
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 9.3e-31 138.7 234 38.0
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 1.2e-30 138.3 415 31.8
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 2.7e-30 137.1 242 40.1
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.0e-29 135.2 269 37.9
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 3.0e-29 133.7 252 39.3
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 3.9e-29 133.3 426 31.0
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 5.1e-29 132.9 261 39.5
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.5e-28 131.3 287 35.9
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 3.3e-28 130.2 398 30.9
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 1.6e-27 127.9 260 36.9
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 3.7e-27 126.7 236 37.3
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.7e-27 126.7 239 36.4
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 3.7e-27 126.7 254 37.0
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.8e-27 126.3 238 36.6
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 6.3e-27 125.9 249 37.8
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 3.1e-26 123.6 210 39.5
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 4.1e-26 123.2 253 36.4
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 1.2e-25 121.7 255 36.1
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 1.1e-23 115.2 254 33.9
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 9.4e-23 112.1 230 33.9
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 6.3e-19 99.4 151 47.0
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.4e-18 97.4 214 39.3
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 9.1e-18 95.5 206 43.7
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 1.2e-17 95.1 69 59.4
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 8.5e-16 89.0 173 35.3
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 8.5e-16 89.0 173 35.3
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 6.1e-14 82.8 175 40.6
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 8.8e-13 79.0 158 41.1
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.5e-12 78.2 47 70.2
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.0e-12 77.8 137 38.0
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 5.7e-12 76.3 210 33.8
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.7e-11 74.7 133 39.1
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 6.3e-11 72.8 416 26.4
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 8.2e-11 72.4 387 25.3
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 9.1e-10 68.9 51 56.9
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 5.9e-09 66.2 84 51.2


User provided reference genes

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