Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 0.0e+00 1264.2 704 100.0
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 0.0e+00 1190.6 704 92.9
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 6.3e-278 960.7 714 70.6
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 2.8e-262 908.7 704 68.6
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 2.7e-257 892.1 707 67.0
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 7.7e-252 874.0 695 67.3
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 3.8e-251 871.7 694 67.4
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 7.2e-250 867.5 697 66.6
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 2.0e-247 859.4 702 66.8
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 2.6e-247 859.0 691 65.8
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 9.8e-247 857.1 709 65.3
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.3e-246 856.7 687 66.7
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.7e-246 856.3 695 65.9
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 1.7e-246 856.3 691 65.6
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 2.2e-246 855.9 704 66.9
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 2.8e-246 855.5 702 66.7
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 2.0e-244 849.4 687 66.2
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 1.0e-243 847.0 708 63.4
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 1.7e-243 846.3 683 65.7
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 8.6e-243 844.0 695 65.2
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.1e-242 843.6 688 65.3
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.5e-242 843.2 697 64.1
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 1.6e-241 839.7 686 64.3
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 2.8e-241 839.0 702 64.0
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 2.8e-241 839.0 682 65.4
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 1.0e-240 837.0 686 64.3
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 2.6e-239 832.4 687 64.3
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.5e-239 830.9 688 64.5
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 8.3e-238 827.4 686 63.7
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.8e-237 826.2 674 65.1
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 7.0e-237 824.3 686 64.4
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 3.5e-236 822.0 688 63.7
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 7.8e-236 820.8 686 62.7
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 3.8e-235 818.5 699 62.5
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 6.6e-235 817.8 686 62.7
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 8.6e-235 817.4 687 62.9
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 8.6e-235 817.4 667 64.3
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 4.3e-234 815.1 700 62.3
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 9.5e-234 813.9 686 63.7
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 2.1e-233 812.8 690 64.5
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.0e-232 810.4 686 62.5
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.0e-232 808.9 674 64.5
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 8.9e-232 807.4 689 63.3
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 1.3e-230 803.5 706 60.6
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.1e-229 800.4 701 61.8
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 7.0e-229 797.7 704 59.8
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 5.0e-227 791.6 689 61.1
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 6.6e-227 791.2 687 61.0
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 6.6e-227 791.2 699 60.8
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 1.1e-226 790.4 687 60.0
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 7.3e-226 787.7 688 60.8
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 4.7e-225 785.0 692 61.6
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 3.1e-224 782.3 701 60.6
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 6.8e-224 781.2 716 58.2
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.5e-223 780.0 701 60.3
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 2.6e-223 779.2 704 59.7
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 2.2e-222 776.2 688 61.2
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.6e-220 770.0 688 60.5
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 1.7e-219 766.5 689 60.1
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 1.7e-219 766.5 688 59.7
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 2.5e-218 762.7 623 63.4
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 3.3e-218 762.3 688 59.4
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 4.3e-218 761.9 688 59.4
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 9.5e-218 760.8 687 60.3
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 1.6e-217 760.0 687 59.0
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 8.1e-217 757.7 695 57.8
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 8.1e-217 757.7 688 59.2
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 8.1e-217 757.7 688 59.2
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 8.9e-216 754.2 688 58.6
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 1.5e-215 753.4 677 59.4
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 2.0e-215 753.1 706 58.4
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 2.0e-215 753.1 690 59.1
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 5.8e-215 751.5 687 58.5
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 5.8e-215 751.5 688 58.3
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.4e-214 748.0 704 59.7
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 2.4e-213 746.1 678 59.3
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 7.1e-213 744.6 706 56.9
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 9.2e-213 744.2 688 58.0
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 9.2e-213 744.2 695 59.4
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 1.6e-212 743.4 668 60.0
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 2.7e-212 742.7 706 57.2
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 3.5e-212 742.3 702 57.3
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 4.6e-212 741.9 707 57.1
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 1.7e-211 740.0 701 58.6
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 6.6e-211 738.0 702 58.1
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 2.5e-210 736.1 678 58.7
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 2.1e-209 733.0 600 66.3
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 1.5e-207 726.9 739 54.9
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 5.8e-207 724.9 695 56.4
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 4.9e-206 721.8 582 64.9
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 2.4e-205 719.5 699 56.4
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.8e-201 706.1 688 56.4
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 5.3e-200 701.8 707 54.3
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 7.6e-199 698.0 705 55.3
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 6.0e-196 688.3 706 54.8
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.3e-193 680.6 688 53.3
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 6.2e-193 678.3 675 55.7
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 4.5e-191 672.2 646 59.8
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 4.9e-190 668.7 573 61.3
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 8.4e-182 641.3 606 59.2
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 5.8e-175 618.6 567 55.7
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 8.4e-174 614.8 576 56.9
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 1.9e-170 603.6 677 50.7
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 4.3e-170 602.4 699 50.9
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 4.1e-168 595.9 688 48.7
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 7.7e-167 591.7 553 58.0
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 3.8e-166 589.3 576 56.1
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 4.7e-156 555.8 691 46.5
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 3.0e-155 553.1 675 45.9
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.4e-152 543.5 398 68.1
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 1.2e-148 531.2 700 43.7
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 2.0e-146 523.9 427 64.9
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 8.8e-139 498.4 686 42.3
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 9.7e-138 495.0 682 42.7
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 7.0e-136 488.8 682 41.6
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 3.4e-130 469.9 675 41.6
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 4.4e-130 469.5 426 58.7
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 7.7e-127 458.8 431 58.9
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 2.3e-126 457.2 690 38.4
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 9.5e-125 451.8 685 41.2
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.6e-90 337.4 249 70.3
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 1.3e-86 325.1 383 50.4
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 1.7e-86 324.7 472 42.4
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 8.1e-84 315.8 253 64.8
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 6.2e-76 289.7 234 64.1
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.7e-68 263.8 208 65.9
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 4.9e-65 253.4 383 42.8
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 4.3e-61 240.4 479 34.0
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 5.7e-61 240.0 187 69.5
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 5.3e-59 233.4 382 41.9
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 1.2e-55 222.2 239 51.9
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 2.6e-50 204.5 306 43.1
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 1.2e-47 195.7 289 42.2
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 7.4e-45 186.4 240 47.5
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.8e-44 184.5 139 69.1
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 2.5e-40 171.4 175 51.4
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 1.0e-38 166.0 256 40.6
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.5e-32 145.6 273 37.7
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 4.7e-31 140.6 661 24.8
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 6.1e-31 140.2 224 41.5
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 2.6e-29 134.8 96 71.9
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 7.5e-29 133.3 107 62.6
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 1.8e-27 128.6 98 59.2
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.6e-26 124.8 116 56.9
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.5e-24 119.0 134 54.5
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.2e-24 117.9 132 52.3
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.7e-23 114.8 132 53.0
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 1.8e-22 112.1 148 50.0
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.8e-22 112.1 80 72.5
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 6.8e-22 110.2 88 64.8
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 6.8e-22 110.2 75 78.7
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.5e-18 97.4 69 72.5
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.8e-17 94.4 67 73.1
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 9.8e-13 79.7 82 56.1
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 2.2e-12 78.6 71 54.9
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 2.8e-12 78.2 68 52.9
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 3.1e-11 74.7 83 50.6
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 5.9e-10 70.5 63 52.4
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 2.9e-09 68.2 67 55.2
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 3.8e-09 67.8 162 27.2
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 1.6e-07 62.4 41 73.2
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 2.1e-07 62.0 60 53.3
Cfa021076 Carpinus fangiana HOM05D029012 ORTHO05D034191 1.0e-06 59.7 201 25.9
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 1.4e-06 59.3 72 48.6
arahy.Tifrunner.gnm1.ann1.JG00WY Arachis hypogaea HOM05D004114 ORTHO05D004667 8.9e-06 56.6 48 54.2


User provided reference genes

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