Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 2.5e-267 924.9 468 100.0
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 1.0e-215 753.4 390 97.9
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 2.4e-185 652.5 382 84.8
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.6e-179 632.5 381 84.0
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 9.9e-179 630.6 381 83.5
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 3.8e-178 628.6 383 82.8
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 8.4e-178 627.5 375 84.0
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 1.2e-176 623.6 374 83.4
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 1.7e-175 619.8 375 82.7
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 3.9e-175 618.6 384 80.5
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 8.7e-175 617.5 382 81.4
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 7.3e-174 614.4 382 80.9
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.1e-172 609.0 408 74.5
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 4.0e-172 608.6 377 80.4
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.0e-171 606.3 356 83.7
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 3.4e-171 605.5 354 84.2
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 7.6e-171 604.4 377 79.3
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.3e-170 603.6 408 74.8
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 1.4e-169 600.1 386 78.8
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 5.4e-169 598.2 382 78.3
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 7.1e-169 597.8 383 78.9
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 1.2e-168 597.0 358 81.6
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 6.6e-167 591.3 354 81.6
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.1e-166 590.5 353 82.7
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.5e-166 590.1 359 81.1
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 2.5e-166 589.3 362 80.9
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 2.5e-166 589.3 396 76.8
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 3.3e-166 589.0 352 81.2
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 4.3e-166 588.6 362 79.6
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 5.6e-166 588.2 366 79.0
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 7.3e-166 587.8 362 79.6
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 1.6e-165 586.6 379 78.1
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.6e-165 586.6 349 82.8
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 3.6e-165 585.5 362 79.3
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 3.6e-165 585.5 360 80.0
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 1.8e-164 583.2 384 75.5
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 4.0e-164 582.0 391 76.0
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 3.4e-163 578.9 361 78.9
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 3.4e-163 578.9 377 75.6
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 4.5e-163 578.6 359 79.4
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 4.5e-163 578.6 354 79.9
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 5.8e-163 578.2 354 80.2
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.3e-162 577.0 362 77.9
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 2.2e-162 576.2 358 79.1
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 3.8e-162 575.5 346 80.6
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 4.9e-162 575.1 381 75.6
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 4.9e-162 575.1 359 78.8
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.4e-161 573.5 364 77.2
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 1.9e-161 573.2 353 79.0
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 4.2e-161 572.0 354 79.4
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 1.6e-160 570.1 359 78.8
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 3.5e-160 568.9 354 77.4
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.3e-159 567.0 376 74.5
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 1.3e-159 567.0 385 73.8
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 8.7e-159 564.3 354 77.4
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 1.1e-158 563.9 385 73.0
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 1.1e-158 563.9 385 72.5
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 1.5e-158 563.5 402 71.1
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 4.3e-158 562.0 346 80.6
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 5.6e-158 561.6 355 77.5
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 7.4e-158 561.2 385 72.2
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 1.6e-157 560.1 352 76.4
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 1.6e-157 560.1 354 77.1
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 3.7e-157 558.9 412 70.4
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 3.7e-157 558.9 354 77.1
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 1.1e-156 557.4 354 77.4
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 1.4e-156 557.0 376 75.5
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 2.4e-156 556.2 374 73.5
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 1.2e-155 553.9 386 71.5
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 5.8e-155 551.6 387 71.8
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 1.0e-154 550.8 383 72.8
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 1.3e-154 550.4 375 72.5
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 1.7e-154 550.1 376 74.7
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 2.2e-154 549.7 351 74.9
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 8.4e-154 547.7 374 71.7
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 7.9e-152 541.2 375 72.8
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 1.0e-151 540.8 375 72.8
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 3.9e-151 538.9 354 74.9
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 3.9e-151 538.9 354 74.9
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 1.9e-150 536.6 369 71.8
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 3.3e-150 535.8 382 70.9
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 3.1e-148 529.3 400 69.5
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.5e-147 526.9 320 83.1
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 3.4e-147 525.8 348 74.4
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 3.4e-147 525.8 326 78.8
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 4.5e-147 525.4 357 72.5
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 7.6e-147 524.6 356 73.6
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 3.8e-146 522.3 344 72.7
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.1e-145 520.8 381 68.5
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 1.6e-144 516.9 535 56.3
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 1.8e-143 513.5 362 70.2
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.3e-141 507.3 387 69.0
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.6e-141 506.9 378 66.4
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 4.1e-140 502.3 359 72.1
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 4.6e-136 488.8 287 84.0
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 6.7e-135 485.0 355 66.2
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 1.2e-131 474.2 349 68.5
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 1.9e-129 466.8 351 63.2
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 2.5e-129 466.5 356 68.8
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.4e-127 460.7 318 72.6
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.9e-127 459.1 304 73.0
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 6.7e-127 458.4 351 62.1
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 8.8e-127 458.0 300 73.0
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 3.3e-126 456.1 336 66.4
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 8.5e-122 441.4 373 62.2
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.8e-116 423.7 262 79.4
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 3.1e-116 422.9 287 74.2
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 2.9e-114 416.4 308 65.6
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 7.2e-113 411.8 370 54.9
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 4.1e-108 396.0 348 62.1
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 3.2e-105 386.3 320 60.3
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 2.4e-100 370.2 233 77.3
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 2.4e-100 370.2 244 73.4
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 2.0e-91 340.5 374 48.1
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 4.9e-85 319.3 354 48.0
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 1.4e-79 301.2 354 45.2
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 8.4e-69 265.4 259 52.5
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 2.4e-63 247.3 252 56.3
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.0e-58 231.9 153 75.8
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 1.2e-54 218.4 162 68.5
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 2.2e-45 187.6 124 68.5
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-43 181.4 167 54.5
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 6.7e-42 176.0 290 35.2
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 3.3e-41 173.7 142 65.5
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 6.3e-32 142.9 83 80.7
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 3.4e-30 137.1 108 66.7
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 5.9e-30 136.3 77 84.4
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.6e-27 128.3 374 30.7
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 5.1e-26 123.2 83 67.5
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 6.7e-26 122.9 89 70.8
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.1e-25 122.1 95 67.4
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 7.2e-20 102.8 64 70.3
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 4.8e-16 90.1 68 63.2
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 5.9e-14 83.2 71 57.7
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 5.0e-13 80.1 49 71.4
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 2.1e-11 74.7 62 58.1
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 1.1e-09 68.9 42 76.2
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 5.7e-09 66.6 51 62.7
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 2.4e-07 61.2 44 59.1
AUR62000670 Chenopodium quinoa HOM05D001135 ORTHO05D001005 4.1e-07 60.5 48 62.5
ATR0721G059 Amborella trichopoda HOM05D005532 ORTHO05D006873 9.1e-07 59.3 33 81.8


User provided reference genes

Program Settings