Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 3.4e-234 814.7 434 100.0
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.1e-168 597.0 435 76.8
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 7.3e-160 567.8 437 72.8
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 5.2e-158 561.6 446 73.3
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 9.9e-133 477.6 455 63.3
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 8.7e-121 438.0 435 60.5
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 1.4e-115 420.6 452 56.9
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 9.3e-115 417.9 440 58.0
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 1.6e-114 417.2 440 57.7
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 2.7e-114 416.4 440 57.3
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 1.0e-113 414.5 440 57.5
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 6.7e-113 411.8 441 57.8
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 3.3e-112 409.5 434 56.7
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 8.2e-111 404.8 439 56.5
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 2.6e-109 399.8 450 55.3
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 3.4e-109 399.4 450 53.1
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 2.2e-108 396.7 461 54.4
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 3.8e-108 396.0 440 55.7
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 6.5e-108 395.2 462 53.0
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 8.5e-108 394.8 450 53.3
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 1.1e-107 394.4 441 54.9
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 1.4e-107 394.0 502 51.8
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 4.6e-106 389.0 437 55.1
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 2.3e-105 386.7 435 53.6
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 3.9e-105 386.0 461 52.1
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 8.8e-105 384.8 521 48.2
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 1.5e-104 384.0 439 55.4
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 4.3e-104 382.5 447 54.4
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 5.7e-104 382.1 428 55.4
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 9.7e-104 381.3 435 54.3
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 1.3e-103 380.9 446 54.0
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 4.8e-103 379.0 425 53.4
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 4.8e-103 379.0 440 54.1
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 8.2e-103 378.3 453 53.6
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 1.1e-102 377.9 460 54.3
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 1.4e-102 377.5 448 52.0
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 1.8e-102 377.1 441 54.2
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 3.1e-102 376.3 450 53.1
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 5.3e-102 375.6 419 56.1
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 2.0e-101 373.6 457 53.8
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 5.9e-101 372.1 424 52.6
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 5.9e-101 372.1 443 52.6
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 7.7e-101 371.7 428 54.0
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 7.7e-101 371.7 421 51.1
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 1.7e-100 370.5 421 53.2
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 2.9e-100 369.8 442 49.5
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 2.9e-100 369.8 436 52.3
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 6.5e-100 368.6 444 53.4
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 1.4e-99 367.5 443 52.4
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 2.5e-99 366.7 440 53.2
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 3.2e-99 366.3 446 54.0
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 9.4e-99 364.8 438 51.8
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.6e-98 364.0 446 48.9
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 7.9e-98 361.7 421 53.9
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 7.9e-98 361.7 434 49.3
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 2.3e-97 360.1 449 49.4
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 3.9e-97 359.4 421 53.2
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 5.7e-96 355.5 413 52.8
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 7.4e-96 355.1 439 50.1
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 9.7e-96 354.8 442 50.5
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 1.3e-95 354.4 438 50.7
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 1.3e-95 354.4 443 51.5
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 1.7e-95 354.0 432 52.3
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 3.7e-95 352.8 452 48.5
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 6.3e-95 352.1 407 54.3
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 8.2e-95 351.7 432 48.8
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 1.1e-94 351.3 435 51.0
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 4.1e-94 349.4 416 51.4
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 7.0e-94 348.6 435 51.5
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 9.1e-94 348.2 439 49.9
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 9.1e-94 348.2 419 51.3
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 4.5e-93 345.9 450 48.2
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 5.9e-93 345.5 444 51.4
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 1.1e-91 341.3 429 50.6
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 1.1e-91 341.3 441 49.0
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 7.2e-91 338.6 444 49.5
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 1.6e-90 337.4 427 49.9
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 2.7e-90 336.7 393 55.7
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 2.7e-90 336.7 446 49.1
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 3.6e-90 336.3 480 45.6
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 4.7e-90 335.9 422 49.5
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 6.1e-90 335.5 624 39.6
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 8.8e-89 331.6 455 48.1
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 2.0e-88 330.5 448 47.8
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 3.3e-88 329.7 419 48.2
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 9.7e-88 328.2 446 48.4
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 6.3e-87 325.5 408 48.3
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 1.1e-86 324.7 431 45.7
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 1.8e-86 323.9 441 46.5
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 4.1e-86 322.8 526 43.0
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 7.7e-85 318.5 469 43.7
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 1.7e-84 317.4 418 45.7
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 1.7e-84 317.4 417 52.0
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 2.2e-84 317.0 435 46.0
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 2.9e-84 316.6 443 44.5
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 5.0e-84 315.8 434 46.1
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 5.0e-84 315.8 462 43.3
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 6.5e-84 315.5 448 47.1
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 9.4e-83 311.6 447 45.2
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 5.2e-81 305.8 464 43.3
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 1.7e-76 290.8 384 48.4
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 1.4e-73 281.2 440 43.4
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 1.2e-69 268.1 417 44.4
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 1.5e-67 261.2 425 40.5
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 5.8e-56 222.6 222 54.1
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 5.6e-51 206.1 328 47.3
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 9.5e-51 205.3 201 55.7
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 4.1e-46 189.9 398 35.9
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 8.6e-44 182.2 195 50.3
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 5.8e-40 169.5 459 29.4
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 1.1e-38 165.2 429 28.9
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 1.2e-37 161.8 419 30.1
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 9.9e-32 142.1 436 28.9
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 1.1e-30 138.7 170 47.1
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 3.6e-26 123.6 219 42.5
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 6.2e-26 122.9 157 54.8
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 4.4e-24 116.7 286 29.0
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 1.4e-22 111.7 78 65.4
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 5.4e-22 109.8 64 81.2
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 2.7e-21 107.5 56 91.1
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 8.1e-18 95.9 238 29.0
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 3.4e-16 90.5 80 55.0
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 2.9e-15 87.4 59 72.9
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 3.8e-15 87.0 267 27.0
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 8.1e-10 69.3 229 24.9


User provided reference genes

Program Settings