Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0033100 Salix brachista HOM05D005807 ORTHO05D007121 5.4e-68 260.8 122 100.0
Potri.001G251204 Populus trichocarpa HOM05D005807 ORTHO05D007121 1.4e-55 219.5 157 70.1
arahy.Tifrunner.gnm1.ann1.8F6K17 Arachis hypogaea HOM05D005807 ORTHO05D007121 4.4e-54 214.5 157 67.5
arahy.Tifrunner.gnm1.ann1.B02C3Y Arachis hypogaea HOM05D005807 ORTHO05D007121 4.4e-54 214.5 157 67.5
COL.COLO4_19156 Corchorus olitorius HOM05D005807 ORTHO05D007121 7.5e-54 213.8 128 79.7
Sabra16G0152900 Salix brachista HOM05D005807 ORTHO05D007121 2.2e-53 212.2 189 60.3
Manes.02G119500 Manihot esculenta HOM05D005807 ORTHO05D007121 3.7e-53 211.5 159 66.0
MBI14_g11284_MAGBIO Magnolia biondii HOM05D005807 ORTHO05D007121 4.9e-53 211.1 157 66.9
Phvul.006G068000 Phaseolus vulgaris HOM05D005807 ORTHO05D007121 1.1e-52 209.9 157 65.6
Sed0012142 Sechium edule HOM05D005807 ORTHO05D007121 1.1e-52 209.9 157 66.9
Atru.chr3.4221 Acer truncatum HOM05D005807 ORTHO05D007121 1.4e-52 209.5 159 65.4
VMungo0540G1230 Vigna mungo HOM05D005807 ORTHO05D007121 1.4e-52 209.5 157 66.2
MELO3C020551.2 Cucumis melo HOM05D005807 ORTHO05D007121 1.9e-52 209.1 156 67.3
CsaV3_1G036170 Cucumis sativus L. HOM05D005807 ORTHO05D007121 1.9e-52 209.1 156 67.3
ClCG03G000770 Citrullus lanatus HOM05D005807 ORTHO05D007121 2.4e-52 208.8 159 66.7
MD03G1070800 Malus domestica HOM05D005807 ORTHO05D007121 2.4e-52 208.8 157 66.9
MD11G1074800 Malus domestica HOM05D005807 ORTHO05D007121 2.4e-52 208.8 157 66.9
Aqoxy168s004 Aquilegia oxysepala HOM05D005807 ORTHO05D007121 4.1e-52 208.0 157 65.6
Aqoxy2G00908 Aquilegia oxysepala HOM05D005807 ORTHO05D007121 4.1e-52 208.0 157 65.6
Manes.01G161700 Manihot esculenta HOM05D005807 ORTHO05D007121 4.1e-52 208.0 159 66.0
Lalb_Chr18g0050921 Lupinus albus HOM05D005807 ORTHO05D007121 5.4e-52 207.6 157 65.6
CANSAT25G1325 Cannabis sativa HOM05D005807 ORTHO05D007121 7.0e-52 207.2 156 66.0
Glyma.18G063100 Glycine max HOM05D005807 ORTHO05D007121 7.0e-52 207.2 157 66.2
Nn2g13704 Nelumbo nucifera HOM05D005807 ORTHO05D007121 9.2e-52 206.8 159 66.7
TWI36G1710 Tripterygium wilfordii HOM05D005807 ORTHO05D007121 1.2e-51 206.5 159 64.8
Duzib150G0199 Durio zibethinus HOM05D005807 ORTHO05D007121 1.6e-51 206.1 157 65.0
TAR636G1782 Trochodendron aralioides HOM05D005807 ORTHO05D007121 2.0e-51 205.7 159 65.4
Cpa.g.sc62.98 Carica papaya HOM05D005807 ORTHO05D007121 3.5e-51 204.9 156 64.1
Glyma.11G175500 Glycine max HOM05D005807 ORTHO05D007121 3.5e-51 204.9 157 65.6
Prupe.6G057600 Prunus persica HOM05D005807 ORTHO05D007121 3.5e-51 204.9 157 66.2
Duzib168G1045 Durio zibethinus HOM05D005807 ORTHO05D007121 6.0e-51 204.1 157 65.0
FAN21G1466 Fragaria x ananassa HOM05D005807 ORTHO05D007121 1.0e-50 203.4 157 65.0
Thecc.09G301900 Theobroma cacao HOM05D005807 ORTHO05D007121 1.0e-50 203.4 157 64.3
vmacro10049 Vaccinium macrocarpon HOM05D005807 ORTHO05D007121 1.3e-50 203.0 157 65.0
RcHm_v2.0_Chr5g0069441 Rosa chinensis HOM05D005807 ORTHO05D007121 2.3e-50 202.2 157 64.3
Sp6g20430 Schrenkiella parvula HOM05D005807 ORTHO05D007121 2.3e-50 202.2 157 64.3
AL8G35020 Arabidopsis lyrata HOM05D005807 ORTHO05D007121 3.0e-50 201.8 157 63.7
BcaC04g19835 Brassica carinata HOM05D005807 ORTHO05D007121 3.0e-50 201.8 157 64.3
C09p50820 Brassica napus HOM05D005807 ORTHO05D007121 3.0e-50 201.8 157 64.3
Thhalv10014898m.g Eutrema salsugineum HOM05D005807 ORTHO05D007121 3.0e-50 201.8 157 63.7
CSS0007250 Camellia sinensis var. sinensis HOM05D005807 ORTHO05D007121 3.9e-50 201.4 157 63.7
Ciclev10029472m.g Citrus clementina HOM05D005807 ORTHO05D007121 3.9e-50 201.4 157 63.1
TWI31G0235 Tripterygium wilfordii HOM05D005807 ORTHO05D007121 3.9e-50 201.4 155 64.5
MSTRG.22154 Avicennia marina HOM05D005807 ORTHO05D007121 5.0e-50 201.1 155 63.9
BcaB01g04495 Brassica carinata HOM05D005807 ORTHO05D007121 5.0e-50 201.1 157 63.7
Gohir.A13G224500 Gossypium hirsutum HOM05D005807 ORTHO05D007121 6.6e-50 200.7 155 65.2
Gorai.013G260200 Gossypium raimondii HOM05D005807 ORTHO05D007121 6.6e-50 200.7 155 65.2
THA.LOC104810714 Tarenaya hassleriana HOM05D005807 ORTHO05D007121 6.6e-50 200.7 157 64.3
AT5G58740 Arabidopsis thaliana HOM05D005807 ORTHO05D007121 8.6e-50 200.3 157 63.1
BolC9t57942H Brassica oleracea HOM05D005807 ORTHO05D007121 8.6e-50 200.3 157 63.7
Carub.0008s1936 Capsella rubella HOM05D005807 ORTHO05D007121 8.6e-50 200.3 157 63.1
CiPaw.14G059700 Carya illinoinensis HOM05D005807 ORTHO05D007121 8.6e-50 200.3 159 62.9
Psat5g159160 Pisum sativum HOM05D005807 ORTHO05D007121 8.6e-50 200.3 156 65.4
A10p15530 Brassica napus HOM05D005807 ORTHO05D007121 1.1e-49 199.9 157 63.7
BraA10t43680Z Brassica rapa HOM05D005807 ORTHO05D007121 1.1e-49 199.9 157 63.7
CiPaw.13G077700 Carya illinoinensis HOM05D005807 ORTHO05D007121 1.1e-49 199.9 159 63.5
SGA_v2.0_scaffold92G28310 Striga asiatica HOM05D005807 ORTHO05D007121 1.1e-49 199.9 163 61.3
Eucgr.B02255 Eucalyptus grandis HOM05D005807 ORTHO05D007121 1.5e-49 199.5 157 64.3
PGR102G0477 Punica granatum HOM05D005807 ORTHO05D007121 1.9e-49 199.1 158 63.3
CAN.G394.126 Capsicum annuum HOM05D005807 ORTHO05D007121 2.5e-49 198.7 155 64.5
FvH4_3g38540 Fragaria vesca HOM05D005807 ORTHO05D007121 2.5e-49 198.7 157 63.7
FAN11G3045 Fragaria x ananassa HOM05D005807 ORTHO05D007121 2.5e-49 198.7 157 63.7
Nitab4.5_0000010g0300 Nicotiana tabacum HOM05D005807 ORTHO05D007121 2.5e-49 198.7 157 64.3
Nitab4.5_0008156g0020 Nicotiana tabacum HOM05D005807 ORTHO05D007121 2.5e-49 198.7 157 64.3
THA.LOC104814913 Tarenaya hassleriana HOM05D005807 ORTHO05D007121 2.5e-49 198.7 155 63.9
Solyc06g076940.3 Solanum lycopersicum HOM05D005807 ORTHO05D007121 3.3e-49 198.4 155 64.5
Sopen06g033340 Solanum pennellii HOM05D005807 ORTHO05D007121 3.3e-49 198.4 155 64.5
PGSC0003DMG400030355 Solanum tuberosum HOM05D005807 ORTHO05D007121 3.3e-49 198.4 155 64.5
Gohir.D13G229500 Gossypium hirsutum HOM05D005807 ORTHO05D007121 4.3e-49 198.0 155 64.5
Lj5g0019578 Lotus japonicus HOM05D005807 ORTHO05D007121 4.3e-49 198.0 157 63.1
Lj6g0006671 Lotus japonicus HOM05D005807 ORTHO05D007121 4.3e-49 198.0 157 63.1
GSVIVG01038735001 Vitis vinifera HOM05D005807 ORTHO05D007121 4.3e-49 198.0 157 62.4
CDE06G1535 Ceratophyllum demersum HOM05D005807 ORTHO05D007121 5.6e-49 197.6 157 63.1
CDE06G1924 Ceratophyllum demersum HOM05D005807 ORTHO05D007121 5.6e-49 197.6 157 63.1
Actinidia13933 Actinidia chinensis HOM05D005807 ORTHO05D007121 7.3e-49 197.2 157 63.1
Oeu025375.1 Olea europaea HOM05D005807 ORTHO05D007121 7.3e-49 197.2 157 61.1
Ah.15g099940 Amaranthus hybridus HOM05D005807 ORTHO05D007121 9.5e-49 196.8 156 62.8
Lsat_1_v5_gn_2_122940 Lactuca sativa HOM05D005807 ORTHO05D007121 1.2e-48 196.4 157 62.4
Migut.N02895 Erythranthe guttata HOM05D005807 ORTHO05D007121 2.1e-48 195.7 157 61.8
Hma1.2p1_0703F.1_g206510 Hydrangea macrophylla HOM05D005807 ORTHO05D007121 2.1e-48 195.7 157 62.4
SalBow7G1665 Salvia bowleyana HOM05D005807 ORTHO05D007121 2.1e-48 195.7 159 60.4
Actinidia29698 Actinidia chinensis HOM05D005807 ORTHO05D007121 2.8e-48 195.3 157 62.4
Os01g0668000 Oryza sativa ssp. japonica HOM05D005807 ORTHO05D007121 2.8e-48 195.3 157 61.8
HanXRQChr08g0221811 Helianthus annuus HOM05D005807 ORTHO05D007121 3.6e-48 194.9 157 61.1
PSO339G6415 Papaver somniferum HOM05D005807 ORTHO05D007121 3.6e-48 194.9 157 61.8
Zm00001eb110600 Zea mays HOM05D005807 ORTHO05D007121 3.6e-48 194.9 146 65.8
CARHR272650 Cardamine hirsuta HOM05D005807 ORTHO05D007121 6.2e-48 194.1 157 61.1
Cc05_g09980 Coffea canephora HOM05D005807 ORTHO05D007121 6.2e-48 194.1 159 61.6
PSO801G0778 Papaver somniferum HOM05D005807 ORTHO05D007121 6.2e-48 194.1 157 61.8
HPP92_000412 Vanilla planifolia HOM05D005807 ORTHO05D007121 6.2e-48 194.1 157 62.4
Aa31LG11G500 Aethionema arabicum HOM05D005807 ORTHO05D007121 8.0e-48 193.7 172 57.6
Sc12g0000690 Simmondsia chinensis HOM05D005807 ORTHO05D007121 8.0e-48 193.7 155 62.6
EL10Ac7g16166 Beta vulgaris HOM05D005807 ORTHO05D007121 3.1e-47 191.8 156 60.9
HanXRQChr07g0202931 Helianthus annuus HOM05D005807 ORTHO05D007121 3.1e-47 191.8 157 60.5
SEGI_25973 Sequoiadendron giganteum HOM05D005807 ORTHO05D007121 3.1e-47 191.8 156 60.3
DCAR_013059 Daucus carota HOM05D000043 ORTHO05D000223 1.5e-46 189.5 157 59.9
QL01p038261 Quercus lobata HOM05D005807 ORTHO05D007121 2.0e-46 189.1 181 56.9
unitig_8.g3606 Utricularia gibba HOM05D000298 ORTHO05D001646 3.4e-46 188.3 155 60.0
Sed0002691 Sechium edule HOM05D005807 ORTHO05D007121 5.8e-46 187.6 156 60.9
Hma1.2p1_0703F.1_g206500 Hydrangea macrophylla HOM05D005807 ORTHO05D007121 1.9e-44 182.6 180 54.4
FAN16G0682 Fragaria x ananassa HOM05D005807 ORTHO05D007121 3.0e-42 175.3 128 66.4
THA.LOC104811269 Tarenaya hassleriana HOM05D005807 ORTHO05D007121 5.6e-41 171.0 91 85.7
SMO116G0032 Selaginella moellendorffii HOM05D005807 ORTHO05D007121 2.6e-38 162.2 157 49.0
TAR633G0553 Trochodendron aralioides HOM05D005807 ORTHO05D007121 5.8e-38 161.0 89 82.0
Mapoly0037s0041 Marchantia polymorpha HOM05D005807 ORTHO05D007121 1.1e-36 156.8 155 49.7
Gohir.D09G090500 Gossypium hirsutum HOM05D005807 ORTHO05D007121 1.9e-36 156.0 84 84.5
Cfa011694 Carpinus fangiana HOM05D005807 ORTHO05D007121 9.2e-36 153.7 130 61.5
Dinv34391 Davidia involucrata HOM05D005807 ORTHO05D007121 8.6e-34 147.1 130 59.2
Ca_14930_v3 Cicer arietinum L. HOM05D005807 ORTHO05D007121 2.5e-33 145.6 75 88.0
Pp3c16_190 Physcomitrium patens HOM05D005807 ORTHO05D007121 2.5e-33 145.6 156 46.2
Peaxi162Scf00540g00427 Petunia axillaris HOM05D005807 ORTHO05D007121 9.6e-33 143.7 130 57.7
TPR.G21179 Trifolium pratense HOM05D005807 ORTHO05D007121 4.7e-32 141.4 130 57.7
ATR0618G394 Amborella trichopoda HOM05D005807 ORTHO05D007121 6.2e-32 141.0 130 57.7
Hund18849 Selenicereus undatus HOM05D005807 ORTHO05D007121 2.4e-31 139.0 130 55.4
Haze_24321 Corylus avellana HOM05D005807 ORTHO05D007121 8.9e-31 137.1 158 50.0
AUR62001647 Chenopodium quinoa HOM05D005807 ORTHO05D007121 1.2e-30 136.7 130 54.6
AUR62020129 Chenopodium quinoa HOM05D005807 ORTHO05D007121 1.2e-30 136.7 140 52.9
ECA238G3051 Erigeron canadensis HOM05D005807 ORTHO05D007121 1.5e-30 136.3 130 54.6
MCO15G629 Micromonas commoda HOM05D005807 ORTHO05D007121 1.1e-28 130.2 155 42.6
Medtr3g463620 Medicago truncatula HOM05D005807 ORTHO05D007121 2.7e-27 125.6 158 47.5
Cre08.g369400 Chlamydomonas reinhardtii HOM05D005807 ORTHO05D007121 1.7e-26 122.9 152 41.4
BcaB01g04639 Brassica carinata HOM05D005807 ORTHO05D007121 8.1e-24 114.0 118 52.5
CDE04G2455 Ceratophyllum demersum HOM05D005807 ORTHO05D007121 1.1e-23 113.6 120 51.7
RcHm_v2.0_Chr6g0251941 Rosa chinensis HOM05D005807 ORTHO05D007121 1.8e-23 112.8 88 68.2
Oeu010994.1 Olea europaea HOM05D005807 ORTHO05D007121 4.9e-21 104.8 110 49.1
PRCOL_00004500 Prasinoderma coloniale HOM05D005807 ORTHO05D007121 1.3e-18 96.7 149 34.9
SHI19135 Sapria himalayana HOM05D005807 ORTHO05D007121 6.9e-15 84.3 189 33.9
Gohir.A09G090400 Gossypium hirsutum HOM05D005807 ORTHO05D007121 4.5e-14 81.6 44 84.1
Nn2g11480 Nelumbo nucifera HOM05D005807 ORTHO05D007121 8.4e-13 77.4 51 74.5
MBI14_g43437_MAGBIO Magnolia biondii HOM05D005807 ORTHO05D007121 2.5e-09 65.9 81 46.9
HanXRQChr12g0382081 Helianthus annuus HOM05D005807 ORTHO05D007121 9.6e-09 63.9 86 43.0
Lj8C68T13 Lonicera japonica HOM05D005807 ORTHO05D007121 2.1e-08 62.8 28 89.3
DCAR_011808 Daucus carota HOM05D005807 ORTHO05D007121 2.4e-07 59.3 95 43.2
Potri.009G046000 Populus trichocarpa HOM05D005807 ORTHO05D007121 5.3e-07 58.2 29 93.1
Zm00001eb233440 Zea mays HOM05D005807 ORTHO05D007121 1.2e-06 57.0 82 41.5


User provided reference genes

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