Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 0.0e+00 2302.3 1314 100.0
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 0.0e+00 1555.8 1004 82.4
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 0.0e+00 1459.1 1323 65.0
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 3.7e-255 885.9 1434 48.5
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 5.2e-225 785.8 1414 43.8
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 1.3e-215 754.6 1448 44.3
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 1.6e-213 747.7 1459 43.7
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 8.8e-209 731.9 1467 46.6
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 1.0e-201 708.4 1578 40.9
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 5.4e-198 696.0 1663 41.4
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.4e-198 696.0 1381 40.2
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 1.6e-197 694.5 1383 42.7
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 3.0e-196 690.3 1387 40.7
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 2.3e-193 680.6 1403 41.7
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 3.4e-192 676.8 1385 41.0
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 1.9e-190 671.0 1523 40.4
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 3.0e-188 663.7 1441 41.8
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 2.0e-184 651.0 1627 40.1
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 2.0e-184 651.0 1627 40.1
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 2.0e-184 651.0 1627 40.1
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 5.8e-184 649.4 1586 38.3
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 7.5e-184 649.0 1424 41.9
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 9.2e-182 642.1 1490 39.5
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 2.1e-181 641.0 1408 40.4
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 3.5e-181 640.2 1462 41.4
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 1.4e-177 628.2 1424 40.0
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.6e-176 624.0 1451 39.5
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.3e-175 621.7 1453 40.3
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 1.1e-171 608.6 1541 39.5
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 2.8e-162 577.4 1384 40.8
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 3.6e-162 577.0 1509 39.7
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 1.4e-161 575.1 1577 37.3
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 2.0e-160 571.2 1726 37.1
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 1.1e-155 555.4 1292 37.4
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 6.2e-154 549.7 1507 39.2
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 1.8e-153 548.1 1550 36.9
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 3.3e-147 527.3 1500 36.9
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 2.1e-146 524.6 1489 37.3
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.9e-143 514.2 1765 35.7
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 1.3e-140 505.4 1518 35.1
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 3.0e-140 504.2 1507 36.8
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 2.5e-139 501.1 1424 38.2
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 3.3e-139 500.7 1490 38.4
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 5.0e-135 486.9 1403 38.2
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 2.3e-132 478.0 1417 38.5
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 8.7e-132 476.1 1689 35.3
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 7.4e-131 473.0 1428 34.9
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 2.2e-130 471.5 1391 39.2
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 6.3e-130 469.9 1435 36.0
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 8.2e-130 469.5 1459 34.6
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 1.8e-129 468.4 1486 34.3
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 5.3e-129 466.8 1410 36.2
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 5.5e-126 456.8 1415 36.1
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 1.8e-124 451.8 1398 36.3
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 2.6e-123 448.0 1367 38.3
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 2.6e-123 448.0 1370 37.8
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 3.1e-121 441.0 1390 39.1
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 2.6e-120 438.0 1758 33.3
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 6.7e-116 423.3 1395 36.6
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 1.5e-115 422.2 1538 35.0
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 2.8e-114 417.9 1406 36.2
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 5.3e-113 413.7 1456 35.2
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 2.0e-112 411.8 1429 37.9
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 3.8e-111 407.5 1501 36.0
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 3.2e-110 404.4 1460 34.5
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 2.0e-104 385.2 1376 38.7
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 7.7e-104 383.3 675 49.2
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 7.7e-104 383.3 1339 34.7
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.1e-102 379.4 1152 38.5
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 2.5e-102 378.3 1379 37.7
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 2.7e-101 374.8 1358 36.5
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 6.1e-101 373.6 1339 35.3
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 3.4e-99 367.9 1431 33.0
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 5.7e-99 367.1 949 42.9
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 4.8e-98 364.0 1187 32.2
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 3.1e-97 361.3 1098 32.1
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 9.1e-97 359.8 724 41.2
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 2.1e-93 348.6 1341 34.4
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.8e-84 318.9 1188 34.8
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.8e-81 308.9 208 74.5
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 2.4e-81 308.5 1346 33.1
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.8e-77 295.0 1022 31.0
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 3.6e-77 294.7 1350 32.1
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 6.8e-76 290.4 189 74.1
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 8.9e-76 290.0 1078 33.6
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 2.0e-75 288.9 1507 29.9
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 3.4e-75 288.1 416 45.0
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 6.4e-74 283.9 1693 31.7
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 2.7e-72 278.5 1410 31.1
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 1.6e-69 269.2 1121 29.6
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 4.9e-66 257.7 895 29.8
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.5e-64 251.5 1024 29.9
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 3.0e-63 248.4 1212 29.1
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 3.3e-62 245.0 140 77.9
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 3.6e-61 241.5 1119 31.4
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 8.9e-60 236.9 1637 31.9
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 3.6e-53 214.9 404 41.6
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 5.8e-51 207.6 1347 30.0
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 2.9e-50 205.3 1373 30.7
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 9.3e-49 200.3 100 89.0
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 9.3e-49 200.3 179 56.4
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 3.5e-48 198.4 669 35.3
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 1.0e-47 196.8 1101 28.4
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 8.7e-47 193.7 179 55.3
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 1.1e-46 193.4 317 41.3
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 2.1e-45 189.1 103 76.7
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 8.1e-45 187.2 162 63.0
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 1.9e-41 176.0 639 30.0
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 4.6e-40 171.4 304 37.5
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 3.3e-38 165.2 361 34.3
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 2.1e-37 162.5 157 51.0
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 3.1e-36 158.7 148 54.7
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 2.9e-34 152.1 195 45.6
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 1.1e-33 150.2 135 54.8
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 1.4e-33 149.8 115 64.3
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.9e-31 141.7 72 84.7
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.9e-31 141.7 72 84.7
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 1.2e-27 130.2 716 35.1
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 8.4e-26 124.0 418 29.9
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 8.2e-21 107.5 136 50.7
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 3.1e-20 105.5 94 57.4
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 3.0e-15 89.0 131 33.6
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 1.9e-14 86.3 327 27.8
TAR623G0390 Trochodendron aralioides HOM05D005457 ORTHO05D006350 9.7e-14 84.0 663 26.5
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 9.7e-14 84.0 62 61.3
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 1.3e-13 83.6 114 36.0
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 1.7e-13 83.2 115 33.9
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 3.7e-13 82.0 185 27.6
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 6.3e-13 81.3 96 37.5
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 5.3e-12 78.2 811 29.7
Psat2g109120 Pisum sativum HOM05D005457 ORTHO05D006350 5.5e-09 68.2 238 29.0
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 6.1e-08 64.7 43 67.4
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 7.9e-08 64.3 423 25.1
Nn2g14614 Nelumbo nucifera HOM05D005457 ORTHO05D006350 8.8e-07 60.8 92 40.2
Hund18872 Selenicereus undatus HOM05D005457 ORTHO05D006350 1.1e-06 60.5 429 25.4


User provided reference genes

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