Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 2.0e-86 322.4 161 100.0
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.1e-71 273.5 164 85.4
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 3.8e-53 211.8 163 72.4
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 1.6e-51 206.5 158 70.9
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 2.6e-46 189.1 155 60.6
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 5.8e-46 188.0 155 60.6
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.7e-45 186.4 155 59.4
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.7e-45 186.4 163 57.7
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.9e-45 185.7 155 61.9
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 3.8e-45 185.3 131 67.2
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 3.8e-45 185.3 155 60.0
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 3.2e-44 182.2 107 79.4
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 7.1e-44 181.0 162 59.3
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 9.3e-44 180.6 158 60.1
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 9.3e-44 180.6 126 69.0
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 9.3e-44 180.6 141 63.8
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 2.1e-43 179.5 151 60.9
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 2.1e-43 179.5 138 60.9
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.1e-43 179.5 157 59.2
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 2.7e-43 179.1 156 59.0
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 2.7e-43 179.1 154 59.7
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 4.6e-43 178.3 157 58.0
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 4.6e-43 178.3 149 63.1
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 7.9e-43 177.6 157 58.0
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.0e-42 177.2 154 60.4
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 1.3e-42 176.8 157 57.3
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 1.8e-42 176.4 159 57.9
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 1.8e-42 176.4 159 57.9
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.3e-42 176.0 161 55.9
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 8.7e-42 174.1 143 62.9
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.1e-41 173.7 129 63.6
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 2.5e-41 172.6 155 58.1
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 3.3e-41 172.2 159 57.2
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 3.3e-41 172.2 149 57.7
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 5.6e-41 171.4 146 58.2
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 7.4e-41 171.0 104 74.0
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 9.6e-41 170.6 157 57.3
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 9.6e-41 170.6 103 73.8
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.3e-40 170.2 158 55.1
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 2.1e-40 169.5 140 61.4
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 2.1e-40 169.5 155 56.8
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 2.8e-40 169.1 149 57.0
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 2.8e-40 169.1 148 59.5
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 3.7e-40 168.7 141 59.6
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 4.8e-40 168.3 156 58.3
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.8e-40 168.3 104 75.0
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 4.8e-40 168.3 153 56.2
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 6.2e-40 167.9 134 60.4
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 6.2e-40 167.9 159 58.5
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 8.2e-40 167.5 103 71.8
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 1.4e-39 166.8 163 59.5
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.8e-39 166.4 126 62.7
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 2.4e-39 166.0 157 56.1
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 4.0e-39 165.2 104 73.1
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 4.0e-39 165.2 150 54.7
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 5.3e-39 164.9 135 63.7
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 5.3e-39 164.9 103 70.9
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 6.9e-39 164.5 103 70.9
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 6.9e-39 164.5 134 59.7
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 9.0e-39 164.1 102 73.5
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 1.2e-38 163.7 136 62.5
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 1.2e-38 163.7 144 56.9
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 1.5e-38 163.3 104 70.2
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 2.0e-38 162.9 102 72.5
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 2.0e-38 162.9 103 71.8
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 2.6e-38 162.5 108 70.4
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 3.4e-38 162.2 147 55.8
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 3.4e-38 162.2 142 57.7
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 3.4e-38 162.2 158 55.7
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 5.8e-38 161.4 103 69.9
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 7.6e-38 161.0 144 57.6
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 7.6e-38 161.0 94 74.5
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 1.0e-37 160.6 102 69.6
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 1.7e-37 159.8 99 70.7
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 1.7e-37 159.8 131 60.3
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 2.2e-37 159.5 103 70.9
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 2.2e-37 159.5 103 70.9
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 2.2e-37 159.5 103 70.9
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 2.2e-37 159.5 134 58.2
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.9e-37 159.1 83 80.7
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 3.8e-37 158.7 149 53.7
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 3.8e-37 158.7 160 53.1
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 6.5e-37 157.9 155 54.8
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 8.4e-37 157.5 93 71.0
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 8.4e-37 157.5 157 55.4
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 8.4e-37 157.5 154 53.9
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 1.4e-36 156.8 155 54.2
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 1.9e-36 156.4 99 70.7
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 1.9e-36 156.4 149 56.4
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 2.5e-36 156.0 108 68.5
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 3.2e-36 155.6 121 62.0
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 4.2e-36 155.2 104 73.1
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.2e-36 155.2 115 62.6
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 1.2e-35 153.7 100 74.0
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 1.2e-35 153.7 164 51.8
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 2.7e-35 152.5 103 69.9
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 2.7e-35 152.5 103 68.9
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 2.7e-35 152.5 150 54.7
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 3.5e-35 152.1 93 72.0
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 3.5e-35 152.1 80 77.5
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 6.0e-35 151.4 159 53.5
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 2.3e-34 149.4 75 81.3
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 3.9e-34 148.7 100 66.0
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 3.9e-34 148.7 148 52.7
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 3.9e-34 148.7 159 50.9
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 5.1e-34 148.3 91 70.3
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.1e-33 147.1 166 54.2
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.1e-33 147.1 166 54.2
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 1.9e-33 146.4 104 67.3
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 3.3e-33 145.6 157 51.0
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 9.7e-33 144.1 163 47.2
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 1.6e-32 143.3 74 81.1
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 2.2e-29 132.9 169 46.7
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 1.1e-28 130.6 128 50.0
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 4.2e-28 128.6 155 48.4
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 1.6e-27 126.7 68 79.4
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 1.6e-27 126.7 91 62.6
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 7.9e-27 124.4 178 42.1
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 1.1e-25 120.6 152 44.7
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 3.7e-24 115.5 99 59.6
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 8.2e-24 114.4 77 68.8
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 9.1e-23 110.9 99 59.6
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 9.1e-23 110.9 54 85.2
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 7.7e-22 107.8 226 31.9
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.3e-21 107.1 52 82.7
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 4.2e-20 102.1 126 45.2
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 2.1e-19 99.8 111 47.7
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 6.1e-19 98.2 77 53.2
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 5.1e-18 95.1 71 64.8
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 6.7e-18 94.7 84 51.2
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 6.7e-18 94.7 68 63.2
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 5.7e-17 91.7 66 65.2
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 5.7e-17 91.7 77 54.5
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 2.6e-14 82.8 71 60.6
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 1.1e-12 77.4 43 74.4
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 4.2e-12 75.5 94 40.4
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 5.2e-10 68.6 76 40.8
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 8.8e-10 67.8 45 62.2
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 2.0e-09 66.6 44 63.6
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 4.8e-08 62.0 37 70.3
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 4.8e-08 62.0 41 61.0
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 1.4e-07 60.5 103 35.9


User provided reference genes

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