Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 9.6e-164 580.1 292 100.0
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 7.6e-145 517.3 290 90.7
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 3.4e-137 491.9 295 84.4
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 3.4e-121 438.7 270 84.4
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 2.5e-111 406.0 297 72.7
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 3.9e-109 398.7 295 71.5
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 6.7e-109 397.9 295 71.2
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 3.7e-107 392.1 297 70.0
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 3.8e-104 382.1 289 69.2
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 1.5e-103 380.2 287 68.3
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.2e-99 366.3 287 67.2
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 4.8e-99 365.2 293 66.6
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 1.1e-98 364.0 294 66.7
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 1.1e-98 364.0 287 66.6
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.4e-98 363.6 286 65.7
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 4.1e-98 362.1 286 65.4
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 5.3e-98 361.7 302 65.2
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 9.1e-98 360.9 289 69.2
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 3.5e-97 359.0 288 67.4
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 4.5e-97 358.6 292 65.8
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 7.7e-97 357.8 291 68.0
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.7e-96 356.7 283 65.7
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 5.0e-96 355.1 273 66.7
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 5.0e-96 355.1 235 71.9
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 1.5e-95 353.6 249 71.1
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 5.5e-95 351.7 288 65.6
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 7.2e-95 351.3 253 69.2
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 9.4e-95 350.9 254 68.9
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 1.6e-94 350.1 297 63.0
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.7e-94 349.4 324 59.6
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 3.6e-94 349.0 291 64.9
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 1.8e-93 346.7 247 70.9
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 3.0e-93 345.9 295 63.7
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 3.0e-93 345.9 254 69.3
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 4.0e-93 345.5 294 62.9
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 2.6e-92 342.8 237 69.6
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 3.4e-92 342.4 296 61.1
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 5.7e-92 341.7 295 62.7
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 5.7e-92 341.7 237 70.5
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 7.5e-92 341.3 237 70.9
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 7.5e-92 341.3 293 62.1
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 7.5e-92 341.3 324 57.1
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 9.8e-92 340.9 293 60.4
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 2.8e-91 339.3 255 66.7
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 3.7e-91 339.0 291 62.5
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 3.7e-91 339.0 254 64.6
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 4.8e-91 338.6 230 70.9
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 6.3e-91 338.2 291 63.2
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.4e-90 337.0 316 60.1
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 1.8e-90 336.7 295 62.0
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.8e-90 336.7 281 61.9
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.8e-90 336.7 334 57.2
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 2.4e-90 336.3 293 61.4
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 3.1e-90 335.9 291 62.9
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 4.1e-90 335.5 233 68.7
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 9.1e-90 334.3 311 58.2
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 4.5e-89 332.0 236 66.9
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 4.5e-89 332.0 237 69.6
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 5.9e-89 331.6 291 62.2
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 2.2e-88 329.7 294 62.9
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 2.9e-88 329.3 279 60.6
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 8.5e-88 327.8 238 68.5
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 1.5e-87 327.0 274 60.2
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 1.9e-87 326.6 295 61.0
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 6.1e-86 321.6 293 60.8
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 1.0e-85 320.9 232 69.0
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 1.0e-85 320.9 347 53.3
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 1.0e-85 320.9 263 65.4
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 5.2e-85 318.5 232 68.5
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 6.8e-85 318.2 297 58.6
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 2.0e-84 316.6 298 59.1
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 2.6e-84 316.2 264 64.4
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 3.4e-84 315.8 296 59.1
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 5.7e-84 315.1 297 57.9
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 5.7e-84 315.1 298 58.7
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 5.7e-84 315.1 295 59.0
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 7.5e-84 314.7 253 64.4
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 9.8e-84 314.3 293 58.4
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 9.8e-84 314.3 299 58.5
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 1.3e-83 313.9 298 58.7
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 1.3e-83 313.9 298 58.7
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 1.3e-83 313.9 298 58.7
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 2.8e-83 312.8 311 56.9
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.1e-82 310.8 277 63.5
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 2.0e-81 306.6 296 59.5
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 5.9e-81 305.1 280 60.0
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 1.7e-80 303.5 288 59.0
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 6.6e-80 301.6 215 67.4
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 5.6e-79 298.5 250 59.2
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 2.8e-78 296.2 286 57.3
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 3.0e-77 292.7 256 58.6
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 4.0e-77 292.4 235 68.5
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 4.4e-76 288.9 305 56.1
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 9.8e-76 287.7 273 60.1
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 9.8e-76 287.7 273 60.1
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 9.8e-76 287.7 273 60.1
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 1.7e-75 287.0 236 62.7
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 8.3e-75 284.6 307 53.1
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 1.4e-74 283.9 237 59.5
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 4.6e-73 278.9 298 53.7
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.1e-71 274.2 180 73.9
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 1.9e-71 273.5 233 64.4
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 8.0e-70 268.1 260 54.2
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 1.2e-62 244.2 214 57.0
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 2.1e-62 243.4 182 67.0
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 1.8e-61 240.4 273 46.2
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 5.2e-61 238.8 248 55.6
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 5.2e-61 238.8 458 37.1
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.2e-60 237.7 237 50.6
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 4.4e-60 235.7 237 51.1
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 2.7e-57 226.5 187 62.0
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.3e-51 207.6 251 43.4
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.5e-47 194.1 163 60.7
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 2.1e-46 190.3 174 59.8
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 9.9e-44 181.4 162 58.6
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 1.3e-43 181.0 135 66.7
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 2.7e-41 173.3 145 61.4
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 2.8e-38 163.3 232 40.1
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 3.1e-37 159.8 115 66.1
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 2.2e-35 153.7 129 62.8
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 1.9e-34 150.6 157 49.7
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 1.3e-32 144.4 89 76.4
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 2.5e-31 140.2 75 85.3
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 9.6e-31 138.3 87 74.7
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 1.3e-30 137.9 84 76.2
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 5.8e-28 129.0 75 74.7
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 2.2e-27 127.1 115 55.7
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 1.3e-24 117.9 82 69.5
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 1.8e-24 117.5 67 80.6
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 3.9e-24 116.3 78 73.1
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 3.9e-24 116.3 78 73.1
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 3.1e-21 106.7 144 45.1
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 3.8e-19 99.8 72 65.3
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 1.1e-15 88.2 55 72.7
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 4.3e-15 86.3 73 60.3
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 2.1e-14 84.0 41 87.8
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 2.8e-14 83.6 93 52.7
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 8.2e-14 82.0 46 78.3
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.8e-13 80.9 80 56.2
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 2.4e-13 80.5 46 80.4
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 2.6e-12 77.0 42 78.6
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 1.4e-10 71.2 71 53.5
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 7.2e-10 68.9 190 28.4
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 3.6e-09 66.6 78 46.2
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 3.9e-08 63.2 234 26.5
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 8.2e-06 55.5 155 31.0


User provided reference genes

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