Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0021100 Salix brachista HOM05D005967 ORTHO05D005174 5.0e-186 654.4 364 100.0
Potri.009G030200 Populus trichocarpa HOM05D005967 ORTHO05D005174 5.2e-58 229.2 172 73.8
Potri.001G239000 Populus trichocarpa HOM05D005967 ORTHO05D005174 7.7e-46 188.7 171 63.2
Sabra16G0144100 Salix brachista HOM05D005967 ORTHO05D005174 1.1e-36 158.3 173 57.2
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 1.5e-36 157.9 187 52.4
Manes.04G034400 Manihot esculenta HOM05D005967 ORTHO05D005174 2.1e-35 154.1 172 52.9
QL01p032269 Quercus lobata HOM05D005967 ORTHO05D005174 4.0e-34 149.8 177 52.5
Duzib150G1094 Durio zibethinus HOM05D005967 ORTHO05D005174 6.8e-34 149.1 177 49.7
Duzib168G1635 Durio zibethinus HOM05D005967 ORTHO05D005174 2.3e-29 134.0 185 47.0
Cfa011491 Carpinus fangiana HOM05D005967 ORTHO05D005174 8.6e-29 132.1 169 56.2
Gohir.A07G098000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 5.6e-28 129.4 171 47.4
Haze_24086 Corylus avellana HOM05D005967 ORTHO05D005174 7.3e-28 129.0 166 56.0
Duzib170G1125 Durio zibethinus HOM05D005967 ORTHO05D005174 1.2e-27 128.3 164 53.0
Gohir.D07G102400 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.1e-27 127.5 167 50.9
Gorai.001G110300 Gossypium raimondii HOM05D005967 ORTHO05D005174 2.3e-26 124.0 167 49.1
CiPaw.14G068900 Carya illinoinensis HOM05D005967 ORTHO05D005174 6.4e-24 115.9 173 47.4
TAR623G0987 Trochodendron aralioides HOM05D005967 ORTHO05D005174 1.9e-23 114.4 178 43.3
COL.COLO4_18500 Corchorus olitorius HOM05D005967 ORTHO05D005174 2.7e-22 110.5 187 47.6
CiPaw.13G095300 Carya illinoinensis HOM05D005967 ORTHO05D005174 3.5e-22 110.2 181 47.5
Nn5g26925 Nelumbo nucifera HOM05D005967 ORTHO05D005174 2.3e-21 107.5 188 52.7
Gohir.D03G126300 Gossypium hirsutum HOM05D005967 ORTHO05D005174 3.9e-21 106.7 177 52.5
Gorai.003G132600 Gossypium raimondii HOM05D005967 ORTHO05D005174 3.9e-21 106.7 177 55.9
Gohir.A03G037600 Gossypium hirsutum HOM05D005967 ORTHO05D005174 5.0e-21 106.3 183 41.5
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 9.5e-20 102.1 162 42.0
Ciclev10029478m.g Citrus clementina HOM05D005967 ORTHO05D005174 2.1e-19 100.9 168 44.6
Nn2g10378 Nelumbo nucifera HOM05D005967 ORTHO05D005174 2.1e-19 100.9 167 53.3
Thecc.09G322800 Theobroma cacao HOM05D005967 ORTHO05D005174 6.2e-19 99.4 190 36.8
Dinv12413 Davidia involucrata HOM05D005967 ORTHO05D005174 8.1e-19 99.0 169 43.8
Dinv16991 Davidia involucrata HOM05D005967 ORTHO05D005174 1.1e-18 98.6 177 44.1
Dinv42940 Davidia involucrata HOM05D005967 ORTHO05D005174 1.1e-18 98.6 177 44.1
Dinv43160 Davidia involucrata HOM05D005967 ORTHO05D005174 1.1e-18 98.6 177 44.1
CANSAT54G2543 Cannabis sativa HOM05D005967 ORTHO05D005174 1.4e-18 98.2 73 68.5
QL07p048152 Quercus lobata HOM05D005967 ORTHO05D005174 1.8e-18 97.8 173 41.0
TWI31G0692 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 3.1e-18 97.1 162 48.8
Duzib106G1613 Durio zibethinus HOM05D005967 ORTHO05D005174 5.8e-17 92.8 181 35.4
CsaV3_1G034090 Cucumis sativus L. HOM05D005967 ORTHO05D005174 2.9e-16 90.5 155 43.2
Atru.chr3.3892 Acer truncatum HOM05D005967 ORTHO05D005174 6.4e-16 89.4 197 39.6
DCAR_005325 Daucus carota HOM05D005967 ORTHO05D005174 1.1e-15 88.6 71 64.8
TWI79G0544 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 1.4e-15 88.2 176 43.2
MELO3C020645.2 Cucumis melo HOM05D005967 ORTHO05D005174 1.9e-15 87.8 150 42.7
Aqoxy4G02913 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 7.1e-15 85.9 80 60.0
CSS0050430 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 7.1e-15 85.9 70 65.7
ClCG03G001590 Citrullus lanatus HOM05D005967 ORTHO05D005174 7.1e-15 85.9 69 63.8
Oeu036150.1 Olea europaea HOM05D005967 ORTHO05D005174 2.1e-14 84.3 76 60.5
Oeu036152.1 Olea europaea HOM05D005967 ORTHO05D005174 2.1e-14 84.3 76 60.5
Thecc.05G040600 Theobroma cacao HOM05D005967 ORTHO05D005174 2.7e-14 84.0 180 36.1
Peaxi162Scf00679g00042 Petunia axillaris HOM05D005967 ORTHO05D014046 4.6e-14 83.2 68 57.4
Oeu019207.1 Olea europaea HOM05D005967 ORTHO05D005174 6.0e-14 82.8 68 66.2
Sed0015612 Sechium edule HOM05D005967 ORTHO05D005174 6.0e-14 82.8 67 64.2
Aqoxy2G02105 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 1.3e-13 81.6 75 57.3
Prupe.6G078900 Prunus persica HOM05D005967 ORTHO05D005174 1.3e-13 81.6 164 39.0
Oeu054156.1 Olea europaea HOM05D005967 ORTHO05D005174 1.7e-13 81.3 67 67.2
FAN11G1916 Fragaria x ananassa HOM05D005967 ORTHO05D005174 3.0e-13 80.5 69 66.7
FAN16G3022 Fragaria x ananassa HOM05D005967 ORTHO05D005174 3.0e-13 80.5 69 66.7
FAN21G3710 Fragaria x ananassa HOM05D005967 ORTHO05D005174 3.0e-13 80.5 69 66.7
Glyma.15G038800 Glycine max HOM05D005967 ORTHO05D005174 3.0e-13 80.5 69 59.4
MD03G1095400 Malus domestica HOM05D005967 ORTHO05D005174 3.0e-13 80.5 169 40.2
FvH4_3g35950 Fragaria vesca HOM05D005967 ORTHO05D005174 3.9e-13 80.1 69 66.7
Hma1.2p1_1513F.1_g288050 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 3.9e-13 80.1 167 33.5
MD11G1110400 Malus domestica HOM05D005967 ORTHO05D005174 6.6e-13 79.3 169 43.2
Gohir.D01G212200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 8.6e-13 79.0 76 56.6
FAN25G3118 Fragaria x ananassa HOM05D005967 ORTHO05D005174 1.5e-12 78.2 67 67.2
Glyma.13G335500 Glycine max HOM05D005967 ORTHO05D005174 1.5e-12 78.2 69 58.0
Gohir.A01G222700 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.5e-12 78.2 76 55.3
TAR636G2062 Trochodendron aralioides HOM05D000645 ORTHO05D000494 1.5e-12 78.2 148 39.9
Gorai.002G258000 Gossypium raimondii HOM05D005967 ORTHO05D005174 2.5e-12 77.4 76 55.3
Oeu011403.1 Olea europaea HOM05D005967 ORTHO05D005174 3.3e-12 77.0 72 59.7
Duzib093G0486 Durio zibethinus HOM05D005967 ORTHO05D005174 4.3e-12 76.6 184 42.4
Manes.09G089000 Manihot esculenta HOM05D005967 ORTHO05D005174 5.6e-12 76.3 73 54.8
RcHm_v2.0_Chr5g0064301 Rosa chinensis HOM05D005967 ORTHO05D005174 5.6e-12 76.3 69 65.2
VMungo1080G1048 Vigna mungo HOM05D005967 ORTHO05D005174 5.6e-12 76.3 62 58.1
Peaxi162Scf00832g00006 Petunia axillaris HOM05D030065 ORTHO05D005174 1.6e-11 74.7 66 60.6
Dinv37179 Davidia involucrata HOM05D005967 ORTHO05D005174 2.8e-11 73.9 172 33.1
Potri.006G084700 Populus trichocarpa HOM05D005967 ORTHO05D005174 2.8e-11 73.9 178 37.1
DCAR_005974 Daucus carota HOM05D005967 ORTHO05D005174 3.6e-11 73.6 69 53.6
Oeu007791.1 Olea europaea HOM05D005967 ORTHO05D005174 6.2e-11 72.8 76 50.0
Phvul.L004943 Phaseolus vulgaris HOM05D005967 ORTHO05D005174 6.2e-11 72.8 71 49.3
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 8.1e-11 72.4 73 52.1
CiPaw.09G192100 Carya illinoinensis HOM05D005967 ORTHO05D005174 2.3e-10 70.9 76 51.3
Hma1.2p1_1829F.1_g304460 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 3.1e-10 70.5 74 48.6
Oeu024352.1 Olea europaea HOM05D005967 ORTHO05D005174 4.0e-10 70.1 54 63.0
EL10As1g23034 Beta vulgaris HOM05D005967 ORTHO05D005174 5.2e-10 69.7 77 51.9
Sabra06G0064300 Salix brachista HOM05D000729 ORTHO05D001063 5.2e-10 69.7 76 53.9
VMungo1309G2816 Vigna mungo HOM05D005967 ORTHO05D005174 5.2e-10 69.7 53 58.5
Gohir.A04G082200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 8.9e-10 68.9 174 42.5
Sc01g0004310 Simmondsia chinensis HOM05D005967 ORTHO05D005174 8.9e-10 68.9 76 50.0
Rhsim05G0192000 Rhododendron simsii HOM05D005967 ORTHO05D005174 1.5e-09 68.2 71 49.3
Gohir.D04G121000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 3.4e-09 67.0 167 29.3
Gorai.012G103600 Gossypium raimondii HOM05D005967 ORTHO05D005174 3.4e-09 67.0 167 29.3
Actinidia23945 Actinidia chinensis HOM05D005967 ORTHO05D005174 4.4e-09 66.6 64 59.4
Migut.N02671 Erythranthe guttata HOM05D005967 ORTHO05D005174 4.4e-09 66.6 71 57.7
Cfa017389 Carpinus fangiana HOM05D005967 ORTHO05D005174 5.8e-09 66.2 57 59.6
Medtr4g063885 Medicago truncatula HOM05D005967 ORTHO05D005174 7.6e-09 65.9 86 50.0
Ca_28209_v3 Cicer arietinum L. HOM05D005967 ORTHO05D005174 9.9e-09 65.5 86 47.7
Eucgr.B02374 Eucalyptus grandis HOM05D005967 ORTHO05D005174 2.9e-08 63.9 72 48.6
DCAR_020849 Daucus carota HOM05D005967 ORTHO05D005174 4.9e-08 63.2 76 52.6
Migut.J00334 Erythranthe guttata HOM05D005967 ORTHO05D005174 4.9e-08 63.2 78 47.4
Oeu038352.1 Olea europaea HOM05D005967 ORTHO05D005174 6.4e-08 62.8 73 52.1
CSS0050426 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 1.4e-07 61.6 80 50.0
Psat7g217000 Pisum sativum HOM05D005967 ORTHO05D005174 1.9e-07 61.2 91 47.3
Lj3g0001714 Lotus japonicus HOM05D005967 ORTHO05D005174 2.4e-07 60.8 68 54.4
CSS0006279 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 3.2e-07 60.5 67 50.7
Eucgr.A01260 Eucalyptus grandis HOM05D005967 ORTHO05D005174 3.2e-07 60.5 83 45.8
Solyc11g066000.1 Solanum lycopersicum HOM05D030065 ORTHO05D005174 3.2e-07 60.5 72 48.6
TPR.G5598 Trifolium pratense HOM05D005967 ORTHO05D005174 3.2e-07 60.5 52 57.7
Cpa.g.sc81.161 Carica papaya HOM05D005967 ORTHO05D005174 4.1e-07 60.1 82 51.2
Nitab4.5_0004094g0010 Nicotiana tabacum HOM05D005967 ORTHO05D005174 4.1e-07 60.1 62 53.2
PGSC0003DMG400000470 Solanum tuberosum HOM05D030065 ORTHO05D005174 4.1e-07 60.1 72 48.6
MSTRG.5669 Avicennia marina HOM05D005967 ORTHO05D005174 5.4e-07 59.7 77 49.4
Glyma.08G358900 Glycine max HOM05D005967 ORTHO05D005174 5.4e-07 59.7 80 52.5
Glyma.18G177800 Glycine max HOM05D005967 ORTHO05D005174 9.2e-07 58.9 79 50.6
Lsat_1_v5_gn_9_23241 Lactuca sativa HOM05D030279 ORTHO05D029282 9.2e-07 58.9 78 46.2
Rhsim01G0227100 Rhododendron simsii HOM05D005967 ORTHO05D005174 1.2e-06 58.5 73 45.2
Sopen11g025730 Solanum pennellii HOM05D030065 ORTHO05D005174 1.2e-06 58.5 72 47.2
Atru.chr8.1967 Acer truncatum HOM05D005967 ORTHO05D005174 1.6e-06 58.2 84 46.4
Carub.0004s0986 Capsella rubella HOM05D010012 ORTHO05D012171 1.6e-06 58.2 74 48.6
BcaC01g04994 Brassica carinata HOM05D010012 ORTHO05D012171 2.1e-06 57.8 73 46.6
A03p26230 Brassica napus HOM05D010012 ORTHO05D012171 2.1e-06 57.8 73 46.6
C03p31310 Brassica napus HOM05D010012 ORTHO05D012171 2.1e-06 57.8 73 46.6
BolC3t15480H Brassica oleracea HOM05D010012 ORTHO05D012171 2.1e-06 57.8 73 46.6
BraA03t11837Z Brassica rapa HOM05D010012 ORTHO05D012171 2.1e-06 57.8 73 46.6
Phvul.008G100200 Phaseolus vulgaris HOM05D005967 ORTHO05D005174 2.1e-06 57.8 77 53.2
VMungo1383G3210 Vigna mungo HOM05D005967 ORTHO05D005174 2.1e-06 57.8 74 54.1
Haze_20783 Corylus avellana HOM05D005967 ORTHO05D005174 2.7e-06 57.4 42 66.7
THA.LOC104827013 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 2.7e-06 57.4 71 49.3
TWI53G1171 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 2.7e-06 57.4 53 62.3
BcaC02g11018 Brassica carinata HOM05D010012 ORTHO05D012171 3.5e-06 57.0 73 45.2
C04p22150 Brassica napus HOM05D010012 ORTHO05D012171 3.5e-06 57.0 73 45.2
BolC4t23735H Brassica oleracea HOM05D010012 ORTHO05D012171 3.5e-06 57.0 73 45.2
Lj3g0014047 Lotus japonicus HOM05D005967 ORTHO05D005174 3.5e-06 57.0 52 57.7
Psat3g141040 Pisum sativum HOM05D005967 ORTHO05D005174 3.5e-06 57.0 77 48.1
Sp4g11680 Schrenkiella parvula HOM05D010012 ORTHO05D012171 3.5e-06 57.0 73 45.2
A04p21920 Brassica napus HOM05D010012 ORTHO05D012171 4.6e-06 56.6 72 44.4
TPR.G23268 Trifolium pratense HOM05D005967 ORTHO05D005174 4.6e-06 56.6 82 45.1
BcaB06g28260 Brassica carinata HOM05D010012 ORTHO05D012171 7.8e-06 55.8 72 44.4
BcaC02g08129 Brassica carinata HOM05D010012 ORTHO05D012171 7.8e-06 55.8 72 44.4
C04p58060 Brassica napus HOM05D010012 ORTHO05D012171 7.8e-06 55.8 72 44.4
BolC4t27332H Brassica oleracea HOM05D010012 ORTHO05D012171 7.8e-06 55.8 72 44.4


User provided reference genes

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