Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0019900 Salix brachista HOM05D004273 ORTHO05D005041 1.1e-267 926.0 463 100.0
Potri.009G028700 Populus trichocarpa HOM05D004273 ORTHO05D005041 5.3e-225 784.3 462 85.5
Potri.001G237400 Populus trichocarpa HOM05D004273 ORTHO05D005041 3.1e-201 705.3 461 79.4
Sabra16G0143100 Salix brachista HOM05D004273 ORTHO05D005041 2.2e-199 699.1 457 78.1
Manes.04G033100 Manihot esculenta HOM05D004273 ORTHO05D005041 4.9e-162 575.1 441 67.1
Dinv32873 Davidia involucrata HOM05D004273 ORTHO05D005041 4.6e-160 568.5 462 62.8
Atru.chr3.3842_Atru.chr3.3843 Acer truncatum HOM05D004273 ORTHO05D005041 7.8e-160 567.8 460 64.1
TWI79G1222 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 7.3e-158 561.2 460 63.5
Dinv01561 Davidia involucrata HOM05D004273 ORTHO05D005041 2.8e-157 559.3 464 61.6
Cpa.g.sc190.7 Carica papaya HOM05D004273 ORTHO05D005041 1.8e-156 556.6 463 62.0
Cfa011474 Carpinus fangiana HOM05D004273 ORTHO05D005041 3.4e-155 552.4 457 62.1
TAR633G2082 Trochodendron aralioides HOM05D004273 ORTHO05D005041 1.3e-151 540.4 452 61.3
CiPaw.13G097100 Carya illinoinensis HOM05D004273 ORTHO05D005041 1.5e-150 537.0 455 60.7
QL01p032775 Quercus lobata HOM05D004273 ORTHO05D005041 2.5e-150 536.2 458 61.1
TWI31G0117 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 2.8e-149 532.7 466 60.7
Hma1.2p1_0624F.1_g191440 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 1.4e-148 530.4 466 58.4
Prupe.6G080900 Prunus persica HOM05D004273 ORTHO05D005041 3.4e-147 525.8 454 61.2
Thecc.09G325000 Theobroma cacao HOM05D004273 ORTHO05D005041 3.7e-146 522.3 464 58.6
CSS0043051 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 4.9e-146 521.9 462 58.7
COL.COLO4_18478 Corchorus olitorius HOM05D004273 ORTHO05D005041 8.4e-146 521.2 458 59.0
TAR636G0691 Trochodendron aralioides HOM05D004273 ORTHO05D005041 7.1e-145 518.1 455 58.2
PGR102G1220 Punica granatum HOM05D004273 ORTHO05D005041 1.2e-144 517.3 458 58.3
Lj1A156G61 Lonicera japonica HOM05D004273 ORTHO05D005041 2.5e-142 509.6 470 57.4
Lj3g0025927 Lotus japonicus HOM05D004273 ORTHO05D005041 1.2e-141 507.3 457 58.9
Haze_24060 Corylus avellana HOM05D004273 ORTHO05D005041 2.1e-141 506.5 482 56.0
MD03G1096600 Malus domestica HOM05D004273 ORTHO05D005041 4.7e-141 505.4 457 57.8
GSVIVG01025001001 Vitis vinifera HOM05D004273 ORTHO05D005041 1.8e-140 503.4 409 62.8
Gohir.A03G040200 Gossypium hirsutum HOM05D004273 ORTHO05D005041 8.9e-140 501.1 453 57.0
Sp5g15230 Schrenkiella parvula HOM05D004273 ORTHO05D005041 2.0e-139 500.0 467 54.8
THA.LOC104799449 Tarenaya hassleriana HOM05D004273 ORTHO05D005041 4.4e-139 498.8 463 54.9
ClCG02G020320 Citrullus lanatus HOM05D004273 ORTHO05D005041 5.8e-139 498.4 454 57.3
AL5G25280 Arabidopsis lyrata HOM05D004273 ORTHO05D005041 2.9e-138 496.1 465 55.1
Sed0008303 Sechium edule HOM05D004273 ORTHO05D005041 4.9e-138 495.4 457 56.7
PGSC0003DMG400030404 Solanum tuberosum HOM05D004273 ORTHO05D005041 8.4e-138 494.6 463 55.5
MD11G1142800 Malus domestica HOM05D004273 ORTHO05D005041 1.1e-137 494.2 428 58.6
Gorai.003G134500 Gossypium raimondii HOM05D004273 ORTHO05D005041 1.9e-137 493.4 453 56.3
CSS0029075 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 2.4e-137 493.0 462 55.2
Ca_19181_v3 Cicer arietinum L. HOM05D004273 ORTHO05D005041 2.4e-137 493.0 455 58.2
A06p27020 Brassica napus HOM05D004273 ORTHO05D005041 4.2e-137 492.3 457 55.1
FvH4_3g35600 Fragaria vesca HOM05D004273 ORTHO05D005041 9.3e-137 491.1 429 58.7
CAN.G394.46 Capsicum annuum HOM05D004273 ORTHO05D005041 1.2e-136 490.7 434 57.8
BolC3t19006H Brassica oleracea HOM05D004273 ORTHO05D005041 1.6e-136 490.3 464 53.9
BcaC01g02262 Brassica carinata HOM05D004273 ORTHO05D005041 2.7e-136 489.6 464 53.7
BraA06t25640Z Brassica rapa HOM05D004273 ORTHO05D005041 4.6e-136 488.8 464 54.5
Gohir.D03G127800 Gossypium hirsutum HOM05D004273 ORTHO05D005041 4.6e-136 488.8 453 55.8
Peaxi162Scf00679g00214 Petunia axillaris HOM05D004273 ORTHO05D005041 4.6e-136 488.8 434 57.8
RcHm_v2.0_Chr5g0063781 Rosa chinensis HOM05D004273 ORTHO05D005041 6.0e-136 488.4 432 58.8
arahy.Tifrunner.gnm1.ann1.44D9RB Arachis hypogaea HOM05D004273 ORTHO05D005041 1.7e-135 486.9 461 55.1
FAN16G0116 Fragaria x ananassa HOM05D004273 ORTHO05D005041 1.7e-135 486.9 435 57.9
C03p67250 Brassica napus HOM05D004273 ORTHO05D005041 2.3e-135 486.5 464 53.4
BcaB02g10723 Brassica carinata HOM05D004273 ORTHO05D005041 3.0e-135 486.1 465 55.1
Medtr4g063605 Medicago truncatula HOM05D004273 ORTHO05D005041 3.0e-135 486.1 456 55.7
arahy.Tifrunner.gnm1.ann1.0ME452 Arachis hypogaea HOM05D004273 ORTHO05D005041 3.9e-135 485.7 461 54.9
CsaV3_6G017020 Cucumis sativus L. HOM05D004273 ORTHO05D005041 3.9e-135 485.7 429 57.6
Aa31LG4G15500 Aethionema arabicum HOM05D004273 ORTHO05D005041 5.1e-135 485.3 463 54.6
FAN21G1625 Fragaria x ananassa HOM05D004273 ORTHO05D005041 6.6e-135 485.0 429 58.3
AT3G46450 Arabidopsis thaliana HOM05D004273 ORTHO05D005041 8.7e-135 484.6 467 53.7
Lalb_Chr03g0026761 Lupinus albus HOM05D004273 ORTHO05D005041 8.7e-135 484.6 456 57.2
MBI05_g06541_MAGBIO Magnolia biondii HOM05D004273 ORTHO05D005041 1.1e-134 484.2 449 54.8
Glyma.11G141100 Glycine max HOM05D004273 ORTHO05D005041 2.5e-134 483.0 457 56.9
Actinidia07045 Actinidia chinensis HOM05D004273 ORTHO05D005041 2.1e-133 479.9 447 56.4
Thhalv10002507m.g Eutrema salsugineum HOM05D004273 ORTHO05D005041 2.1e-133 479.9 465 53.5
Lalb_Chr19g0137751 Lupinus albus HOM05D004273 ORTHO05D005041 2.1e-133 479.9 450 56.9
Glyma.15G039800 Glycine max HOM05D004273 ORTHO05D005041 3.6e-133 479.2 466 54.3
FAN11G1845 Fragaria x ananassa HOM05D004273 ORTHO05D005041 4.8e-133 478.8 437 57.0
Phvul.011G065600 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 4.8e-133 478.8 458 57.0
Carub.0005s1225 Capsella rubella HOM05D004273 ORTHO05D005041 6.2e-133 478.4 465 53.5
EL10Ac7g15984 Beta vulgaris HOM05D004273 ORTHO05D005041 8.1e-133 478.0 451 55.0
Sopen06g032400 Solanum pennellii HOM05D004273 ORTHO05D005041 1.4e-132 477.2 463 53.6
Solyc06g075980.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 1.8e-132 476.9 463 53.8
TPR.G10209 Trifolium pratense HOM05D004273 ORTHO05D005041 4.0e-132 475.7 454 55.3
CARHR155380 Cardamine hirsuta HOM05D004273 ORTHO05D005041 5.8e-131 471.9 469 52.9
Lalb_Chr24g0394211 Lupinus albus HOM05D004273 ORTHO05D005041 7.6e-131 471.5 449 55.2
MSTRG.1791 Avicennia marina HOM05D004273 ORTHO05D005041 1.3e-130 470.7 464 54.3
Ciclev10028607m.g Citrus clementina HOM05D004273 ORTHO05D005041 1.7e-130 470.3 392 61.7
PSO339G3737 Papaver somniferum HOM05D004273 ORTHO05D005041 1.7e-130 470.3 426 56.6
arahy.Tifrunner.gnm1.ann1.N7EFUM Arachis hypogaea HOM05D004273 ORTHO05D005041 4.9e-130 468.8 459 54.7
DCAR_005310 Daucus carota HOM05D004273 ORTHO05D005041 8.4e-130 468.0 456 52.9
Duzib170G0539 Durio zibethinus HOM05D004273 ORTHO05D005041 1.9e-129 466.8 419 58.2
VMungo1127G1030 Vigna mungo HOM05D004273 ORTHO05D005041 1.9e-129 466.8 465 55.1
arahy.Tifrunner.gnm1.ann1.T00HES Arachis hypogaea HOM05D004273 ORTHO05D005041 4.2e-129 465.7 457 54.7
Duzib168G0407 Durio zibethinus HOM05D004273 ORTHO05D005041 1.6e-128 463.8 471 53.9
PSO384G1393 Papaver somniferum HOM05D004273 ORTHO05D005041 1.6e-128 463.8 429 56.6
Migut.E01325 Erythranthe guttata HOM05D004273 ORTHO05D005041 2.7e-128 463.0 437 56.5
SalBow8G5260 Salvia bowleyana HOM05D004273 ORTHO05D005041 7.9e-128 461.5 470 53.2
MELO3C013689.2 Cucumis melo HOM05D004273 ORTHO05D005041 2.3e-127 459.9 463 52.9
Eucgr.B02383 Eucalyptus grandis HOM05D004273 ORTHO05D005041 1.1e-126 457.6 469 52.9
VMungo1080G0602 Vigna mungo HOM05D004273 ORTHO05D005041 1.5e-126 457.2 463 52.9
Psat7g217720 Pisum sativum HOM05D004273 ORTHO05D005041 1.3e-125 454.1 451 52.5
ECA236G0424 Erigeron canadensis HOM05D004273 ORTHO05D005041 8.1e-125 451.4 426 54.5
HanXRQChr02g0044491 Helianthus annuus HOM05D004273 ORTHO05D005041 1.4e-124 450.7 427 55.5
Phvul.L004243 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 1.4e-124 450.7 459 52.1
Hund04983 Selenicereus undatus HOM05D004273 ORTHO05D005041 1.4e-124 450.7 452 52.7
Dinv31442 Davidia involucrata HOM05D004273 ORTHO05D005041 2.4e-124 449.9 454 51.8
Aqoxy4G02965 Aquilegia oxysepala HOM05D004273 ORTHO05D005041 4.0e-124 449.1 452 53.3
Rhsim13G0085100 Rhododendron simsii HOM05D004273 ORTHO05D005041 4.0e-124 449.1 442 53.4
SGA_v2.0_scaffold111G31385 Striga asiatica HOM05D004273 ORTHO05D005041 4.0e-124 449.1 462 51.5
Glyma.13G334700 Glycine max HOM05D004273 ORTHO05D005041 2.6e-123 446.4 459 51.9
Oeu017093.1 Olea europaea HOM05D004273 ORTHO05D005041 2.6e-123 446.4 463 53.6
Hma1.2p1_0533F.1_g173530 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 8.4e-122 441.4 469 50.7
AUR62009603 Chenopodium quinoa HOM05D004273 ORTHO05D005041 2.3e-119 433.3 450 51.3
Zm00001eb062630 Zea mays HOM05D004273 ORTHO05D005041 2.3e-119 433.3 460 49.3
Lsat_1_v5_gn_8_77981 Lactuca sativa HOM05D000739 ORTHO05D005041 6.7e-119 431.8 429 52.2
AUR62001817 Chenopodium quinoa HOM05D004273 ORTHO05D005041 1.6e-117 427.2 450 50.4
Cc01_g12600 Coffea canephora HOM05D004273 ORTHO05D005041 2.0e-115 420.2 418 53.1
CSS0019329 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 2.2e-114 416.8 442 48.6
CDE04G0924 Ceratophyllum demersum HOM05D004273 ORTHO05D005041 1.1e-113 414.5 447 49.9
Os03g0820900 Oryza sativa ssp. japonica HOM05D004273 ORTHO05D005041 4.2e-113 412.5 454 47.1
Actinidia02958 Actinidia chinensis HOM05D004273 ORTHO05D005041 9.6e-110 401.4 416 50.5
Sc06g0008260 Simmondsia chinensis HOM05D004273 ORTHO05D005041 1.4e-108 397.5 330 60.9
Nn2g10411 Nelumbo nucifera HOM05D004273 ORTHO05D005041 2.4e-108 396.7 374 56.4
Sc06g0002640 Simmondsia chinensis HOM05D004273 ORTHO05D005041 9.0e-108 394.8 374 51.6
EL10Ac2g03411 Beta vulgaris HOM05D004273 ORTHO05D005041 1.2e-107 394.4 447 46.8
Nitab4.5_0001838g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 3.4e-107 392.9 432 49.5
ATR0559G270 Amborella trichopoda HOM05D004273 ORTHO05D005041 3.8e-106 389.4 470 47.2
PGSC0003DMG400023525 Solanum tuberosum HOM05D004273 ORTHO05D005041 6.1e-104 382.1 478 42.7
CAN.G1013.9 Capsicum annuum HOM05D004273 ORTHO05D005041 7.9e-104 381.7 479 41.8
Solyc05g054570.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 1.0e-103 381.3 474 42.2
Peaxi162Scf00015g00152 Petunia axillaris HOM05D004273 ORTHO05D005041 1.8e-103 380.6 470 42.8
Sopen05g033050 Solanum pennellii HOM05D004273 ORTHO05D005041 5.1e-103 379.0 479 42.0
Ah.16g107130 Amaranthus hybridus HOM05D004273 ORTHO05D005041 3.7e-101 372.9 448 44.0
Cc02_g08070 Coffea canephora HOM05D004273 ORTHO05D005041 1.4e-100 370.9 438 44.3
HanXRQChr14g0458231 Helianthus annuus HOM05D004273 ORTHO05D005041 3.1e-100 369.8 416 46.4
Nitab4.5_0001304g0060 Nicotiana tabacum HOM05D004273 ORTHO05D005041 5.3e-100 369.0 315 57.5
Nitab4.5_0001831g0040 Nicotiana tabacum HOM05D004273 ORTHO05D005041 9.0e-100 368.2 479 43.0
HPP92_019085 Vanilla planifolia HOM05D004273 ORTHO05D005041 2.0e-99 367.1 420 45.0
HanXRQChr07g0201161 Helianthus annuus HOM05D004273 ORTHO05D005041 2.6e-99 366.7 422 46.9
AUR62038361 Chenopodium quinoa HOM05D004273 ORTHO05D005041 3.4e-99 366.3 378 50.8
Nitab4.5_0014877g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 7.7e-99 365.2 479 42.8
Lsat_1_v5_gn_2_116561 Lactuca sativa HOM05D004273 ORTHO05D005041 8.5e-98 361.7 353 51.8
ECA238G2787 Erigeron canadensis HOM05D004273 ORTHO05D005041 1.9e-97 360.5 421 46.1
SEGI_06894 Sequoiadendron giganteum HOM05D004273 ORTHO05D005041 4.2e-97 359.4 463 43.2
unitig_747.g21363 Utricularia gibba HOM05D004273 ORTHO05D005041 5.7e-94 349.0 429 44.1
Zm00001eb211720 Zea mays HOM05D004273 ORTHO05D005041 3.1e-84 316.6 373 44.2
Lj1A935G50 Lonicera japonica HOM05D004273 ORTHO05D005041 7.7e-83 312.0 376 45.5
AUR62040968 Chenopodium quinoa HOM05D004273 ORTHO05D005041 3.8e-82 309.7 336 49.7
SMO266G0022 Selaginella moellendorffii HOM05D004273 ORTHO05D005041 7.5e-78 295.4 430 39.3
vmacro03093 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 1.9e-73 280.8 268 57.1
AagrBONN_evm.TU.Sc2ySwM_117.239 Anthoceros agrestis HOM05D004273 ORTHO05D005041 7.5e-70 268.9 346 42.5
Ah.08g219160 Amaranthus hybridus HOM05D004273 ORTHO05D005041 2.2e-69 267.3 255 54.5
Hund12542 Selenicereus undatus HOM05D004273 ORTHO05D005041 9.1e-68 261.9 304 44.7
Pp3c9_11070 Physcomitrium patens HOM05D004273 ORTHO05D005041 3.5e-67 260.0 356 40.4
Pp3c14_19130 Physcomitrium patens HOM05D004273 ORTHO05D005041 4.0e-63 246.5 455 31.9
Mapoly0153s0026 Marchantia polymorpha HOM05D004273 ORTHO05D005041 1.6e-59 234.6 304 39.8
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 1.7e-45 188.0 212 45.3
CBR_g4074 Chara braunii HOM05D004273 ORTHO05D005041 4.1e-44 183.3 382 30.4
Actinidia07731 Actinidia chinensis HOM05D004273 ORTHO05D005041 5.6e-41 172.9 150 56.0
FAN11G3764 Fragaria x ananassa HOM05D004273 ORTHO05D005041 2.8e-40 170.6 356 36.0
Ah.08g219150 Amaranthus hybridus HOM05D004273 ORTHO05D005041 1.4e-39 168.3 192 46.4
FvH4_3g35570 Fragaria vesca HOM05D004273 ORTHO05D005041 5.2e-31 139.8 293 35.2
DCAR_027649 Daucus carota HOM05D004273 ORTHO05D005041 2.0e-30 137.9 173 46.2
Actinidia07724 Actinidia chinensis HOM05D004273 ORTHO05D005041 2.2e-29 134.4 162 43.8
Lj8C85T7 Lonicera japonica HOM05D004273 ORTHO05D005041 7.1e-28 129.4 109 57.8
unitig_748.g7756 Utricularia gibba HOM05D004273 ORTHO05D005041 1.2e-19 102.1 87 55.2
vmacro03094 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 8.7e-18 95.9 71 60.6
TPR.G17285 Trifolium pratense HOM05D004273 ORTHO05D005041 7.3e-17 92.8 159 40.9
Mapoly0091s0075 Marchantia polymorpha HOM05D004273 ORTHO05D031172 1.6e-11 75.1 197 29.9
MCO07G371 Micromonas commoda HOM05D004273 ORTHO05D005041 9.6e-09 65.9 211 23.7
CARHR244980 Cardamine hirsuta HOM05D001180 ORTHO05D001055 1.1e-07 62.4 249 23.3
HPP92_019826 Vanilla planifolia HOM05D000050 ORTHO05D005041 2.4e-07 61.2 46 60.9
BcaB06g28280 Brassica carinata HOM05D004273 ORTHO05D005041 9.0e-07 59.3 43 55.8
Zm00001eb292580 Zea mays HOM05D004273 ORTHO05D005041 2.0e-06 58.2 41 65.9
Actinidia34339 Actinidia chinensis HOM05D004273 ORTHO05D005041 9.9e-06 55.8 39 69.2
HanXRQChr16g0530361 Helianthus annuus HOM05D001180 ORTHO05D001055 9.9e-06 55.8 236 25.0


User provided reference genes

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