Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 1.8e-105 386.0 196 100.0
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.3e-68 263.5 184 77.7
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 7.5e-64 247.7 185 71.4
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 2.4e-54 216.1 184 65.2
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 7.8e-53 211.1 180 65.6
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.3e-52 210.3 172 65.1
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 3.0e-52 209.1 172 64.0
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 3.9e-52 208.8 178 63.5
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 3.9e-52 208.8 172 64.5
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 3.9e-52 208.8 172 64.5
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 3.9e-52 208.8 186 62.9
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 5.1e-52 208.4 172 65.1
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 6.6e-52 208.0 180 61.7
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 2.5e-51 206.1 180 62.8
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 2.5e-51 206.1 172 64.5
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 2.5e-51 206.1 172 64.5
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.5e-51 206.1 172 64.5
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 2.5e-51 206.1 180 61.1
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 2.5e-51 206.1 178 64.0
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 5.6e-51 204.9 245 51.8
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 7.3e-51 204.5 172 64.0
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 9.6e-51 204.1 180 62.8
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 1.2e-50 203.8 176 63.6
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 3.6e-50 202.2 180 62.8
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 3.6e-50 202.2 172 64.0
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 3.6e-50 202.2 172 64.0
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 4.7e-50 201.8 172 63.4
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 8.1e-50 201.1 184 60.3
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 2.4e-49 199.5 180 61.1
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.2e-48 197.2 184 58.7
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 1.2e-48 197.2 185 59.5
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.5e-48 196.8 181 60.2
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 1.5e-48 196.8 172 62.2
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 1.5e-48 196.8 171 62.6
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 2.0e-48 196.4 172 61.6
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 2.6e-48 196.1 171 61.4
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 2.6e-48 196.1 172 59.3
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 4.4e-48 195.3 184 59.2
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 4.4e-48 195.3 172 64.0
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 7.6e-48 194.5 172 62.2
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 7.6e-48 194.5 172 61.0
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 9.9e-48 194.1 185 58.9
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.3e-47 193.7 170 61.8
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 2.2e-47 193.0 184 59.2
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 3.8e-47 192.2 174 61.5
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 4.9e-47 191.8 184 58.2
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 1.1e-46 190.7 184 59.2
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 1.1e-46 190.7 184 59.8
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.1e-46 190.7 177 60.5
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 1.1e-46 190.7 172 59.3
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 2.4e-46 189.5 180 59.4
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 3.2e-46 189.1 172 58.7
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 3.2e-46 189.1 172 58.7
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 3.2e-46 189.1 172 59.3
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 3.2e-46 189.1 172 58.7
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 4.2e-46 188.7 172 59.9
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 4.2e-46 188.7 171 61.4
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 5.4e-46 188.3 171 59.1
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 5.4e-46 188.3 184 58.2
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 5.4e-46 188.3 184 58.2
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 5.4e-46 188.3 184 58.2
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 5.4e-46 188.3 184 58.2
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 5.4e-46 188.3 184 58.2
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 5.4e-46 188.3 184 58.2
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 9.3e-46 187.6 178 58.4
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 1.6e-45 186.8 172 58.1
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 2.1e-45 186.4 184 59.2
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 2.1e-45 186.4 184 57.1
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 2.7e-45 186.0 172 59.3
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 2.7e-45 186.0 173 59.0
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 2.7e-45 186.0 184 57.6
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 3.5e-45 185.7 172 58.7
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.7e-44 183.3 178 56.7
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 2.3e-44 183.0 184 56.5
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 3.0e-44 182.6 172 58.1
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 3.0e-44 182.6 172 59.3
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 3.0e-44 182.6 172 58.7
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 8.7e-44 181.0 181 58.6
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.1e-43 180.6 171 58.5
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.1e-43 180.6 171 58.5
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.1e-43 180.6 178 56.2
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 1.5e-43 180.3 126 65.9
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.5e-43 180.3 171 58.5
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 1.5e-43 180.3 186 54.3
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 1.5e-43 180.3 186 54.3
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.9e-43 179.9 171 58.5
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 2.5e-43 179.5 172 55.8
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 3.3e-43 179.1 171 57.9
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 4.3e-43 178.7 175 57.1
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 1.3e-42 177.2 172 56.4
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 1.6e-42 176.8 172 59.3
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.8e-41 173.3 174 52.3
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 2.4e-41 172.9 174 52.3
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 4.0e-41 172.2 170 52.4
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 6.9e-41 171.4 185 55.1
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 1.2e-40 170.6 172 55.2
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 1.2e-40 170.6 172 55.8
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 1.2e-40 170.6 174 52.9
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 1.5e-40 170.2 161 58.4
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 2.6e-40 169.5 172 55.2
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 5.8e-40 168.3 169 53.3
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 3.8e-39 165.6 126 65.1
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 3.8e-39 165.6 115 69.6
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 4.9e-39 165.2 178 52.2
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 6.4e-39 164.9 138 65.2
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 8.4e-39 164.5 172 54.7
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 1.4e-38 163.7 186 48.9
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 2.4e-38 162.9 184 48.9
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 9.3e-38 161.0 172 53.5
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 1.6e-37 160.2 165 54.5
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 2.1e-37 159.8 171 50.9
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 1.8e-36 156.8 173 53.2
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.9e-35 153.3 154 57.1
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 2.5e-35 152.9 172 51.2
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 3.1e-33 146.0 97 70.1
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 3.1e-33 146.0 97 70.1
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 4.0e-33 145.6 172 51.2
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 5.3e-33 145.2 173 49.7
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 1.2e-32 144.1 184 50.0
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 2.0e-32 143.3 97 70.1
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 2.6e-32 142.9 184 47.8
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 1.9e-30 136.7 187 41.2
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 4.2e-30 135.6 184 48.9
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 1.2e-29 134.0 97 61.9
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 1.0e-28 131.0 98 64.3
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 2.1e-26 123.2 99 59.6
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 4.8e-26 122.1 177 40.1
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 8.2e-26 121.3 132 47.7
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 1.5e-24 117.1 140 42.1
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 1.5e-24 117.1 135 43.7
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 4.5e-24 115.5 80 67.5
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.4e-22 110.5 172 45.9
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 9.3e-22 107.8 103 58.3
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 2.0e-16 90.1 53 79.2
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 4.5e-16 89.0 53 77.4
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 1.3e-15 87.4 88 44.3
Lj2C1057T16 Lonicera japonica HOM05D004887 ORTHO05D006168 5.5e-06 55.5 31 83.9


User provided reference genes

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