Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0006000 Salix brachista HOM05D000272 ORTHO05D000164 6.6e-310 1066.6 572 100.0
Potri.009G009900 Populus trichocarpa HOM05D000272 ORTHO05D000164 7.0e-235 817.4 512 84.2
Potri.009G009800 Populus trichocarpa HOM05D000272 ORTHO05D000164 3.3e-120 436.4 520 52.1
Potri.004G213300 Populus trichocarpa HOM05D000272 ORTHO05D000164 1.0e-116 424.9 520 51.0
Sabra04G0144300 Salix brachista HOM05D000272 ORTHO05D000164 1.0e-113 414.8 520 50.0
Manes.11G148000 Manihot esculenta HOM05D000272 ORTHO05D000164 1.0e-105 388.3 521 48.8
Thecc.09G344800 Theobroma cacao HOM05D000272 ORTHO05D000164 6.8e-97 359.0 536 45.3
GSVIVG01025220001 Vitis vinifera HOM05D000272 ORTHO05D000164 2.0e-96 357.5 535 43.4
Duzib170G0977 Durio zibethinus HOM05D000272 ORTHO05D000164 1.7e-87 327.8 535 43.6
Atru.chr3.3590 Acer truncatum HOM05D000272 ORTHO05D000164 3.5e-85 320.1 546 41.2
Duzib168G0936 Durio zibethinus HOM05D000272 ORTHO05D000164 4.3e-83 313.2 528 42.6
CiPaw.14G085300 Carya illinoinensis HOM05D000272 ORTHO05D000164 1.5e-80 304.7 533 40.3
Nn2g13740 Nelumbo nucifera HOM05D000272 ORTHO05D000164 1.3e-79 301.6 532 39.3
CiPaw.13G116900 Carya illinoinensis HOM05D000272 ORTHO05D000164 2.9e-79 300.4 537 40.4
TAR633G1087 Trochodendron aralioides HOM05D000272 ORTHO05D000164 3.2e-78 297.0 535 38.5
Manes.04G017500 Manihot esculenta HOM05D000272 ORTHO05D000164 2.6e-72 277.3 409 45.5
TAR623G0058 Trochodendron aralioides HOM05D000272 ORTHO05D000164 1.3e-71 275.0 535 37.8
TAR369G0457 Trochodendron aralioides HOM05D000272 ORTHO05D000164 6.4e-71 272.7 532 39.1
QL01p021088 Quercus lobata HOM05D000272 ORTHO05D000164 9.2e-70 268.9 532 43.0
Prupe.6G105100 Prunus persica HOM05D000272 ORTHO05D000164 1.7e-68 264.6 543 38.1
COL.COLO4_18299 Corchorus olitorius HOM05D000272 ORTHO05D000164 3.4e-64 250.4 517 40.0
Dinv32711 Davidia involucrata HOM05D000272 ORTHO05D000164 7.6e-64 249.2 539 38.2
Nn2g11531 Nelumbo nucifera HOM05D000272 ORTHO05D000164 1.3e-63 248.4 546 37.4
Ciclev10027814m.g Citrus clementina HOM05D000272 ORTHO05D000164 1.6e-58 231.5 553 36.7
Gohir.D05G105200 Gossypium hirsutum HOM05D000272 ORTHO05D000164 4.8e-58 229.9 536 36.9
Gorai.009G109300 Gossypium raimondii HOM05D000272 ORTHO05D000164 6.2e-58 229.6 536 36.6
Gohir.A05G105500 Gossypium hirsutum HOM05D000272 ORTHO05D000164 6.9e-57 226.1 533 36.2
Actinidia20440 Actinidia chinensis HOM05D000272 ORTHO05D000164 2.0e-56 224.6 516 36.6
CSS0030447 Camellia sinensis var. sinensis HOM05D000272 ORTHO05D000164 2.0e-56 224.6 522 37.4
MD11G1140600 Malus domestica HOM05D000272 ORTHO05D000164 1.6e-53 214.9 563 35.9
MD03G1122400 Malus domestica HOM05D000272 ORTHO05D000164 7.9e-53 212.6 563 34.6
Cc01_g10830 Coffea canephora HOM05D000272 ORTHO05D000164 2.8e-50 204.1 551 35.4
Hma1.2p1_1097F.1_g256710 Hydrangea macrophylla HOM05D000272 ORTHO05D000164 8.1e-50 202.6 505 33.9
ClCG03G002870 Citrullus lanatus HOM05D000272 ORTHO05D000164 6.0e-45 186.4 548 34.3
Phvul.005G132700 Phaseolus vulgaris HOM05D000272 ORTHO05D000164 1.8e-44 184.9 509 32.4
Actinidia03716 Actinidia chinensis HOM05D000272 ORTHO05D000164 3.0e-44 184.1 440 34.8
VMungo1080G1702 Vigna mungo HOM05D000272 ORTHO05D000164 2.8e-42 177.6 505 31.9
MELO3C004927.2 Cucumis melo HOM05D000272 ORTHO05D000164 1.8e-41 174.9 545 32.5
Glyma.12G176400 Glycine max HOM05D000272 ORTHO05D000164 5.8e-40 169.9 512 32.4
Glyma.13G324200 Glycine max HOM05D000272 ORTHO05D000164 4.2e-38 163.7 515 33.4
Lalb_Chr22g0350321 Lupinus albus HOM05D000272 ORTHO05D000164 1.2e-37 162.2 515 32.8
arahy.Tifrunner.gnm1.ann1.CFLV5S Arachis hypogaea HOM05D000272 ORTHO05D000164 7.9e-37 159.5 531 30.9
Cfa011293 Carpinus fangiana HOM05D000272 ORTHO05D000164 3.3e-35 154.1 514 33.1
arahy.Tifrunner.gnm1.ann1.F41U3J Arachis hypogaea HOM05D000272 ORTHO05D000164 2.1e-34 151.4 531 30.1
RcHm_v2.0_Chr5g0058351 Rosa chinensis HOM05D000272 ORTHO05D000164 2.1e-34 151.4 528 29.9
MSTRG.18676 Avicennia marina HOM05D000272 ORTHO05D000164 1.4e-33 148.7 535 31.2
PSO063G7485 Papaver somniferum HOM05D000272 ORTHO05D000164 3.1e-33 147.5 563 29.1
VMungo1127G0804 Vigna mungo HOM05D000272 ORTHO05D000164 4.1e-33 147.1 518 31.9
Phvul.011G082200 Phaseolus vulgaris HOM05D000272 ORTHO05D000164 5.3e-33 146.7 511 31.7
Hma1.2p1_0297F.1_g117150 Hydrangea macrophylla HOM05D000272 ORTHO05D000164 6.9e-33 146.4 516 30.6
FAN21G1999 Fragaria x ananassa HOM05D000272 ORTHO05D000164 9.0e-33 146.0 534 30.5
Haze_23774 Corylus avellana HOM05D000272 ORTHO05D000164 2.6e-32 144.4 511 32.7
PSO339G2547 Papaver somniferum HOM05D000272 ORTHO05D000164 3.4e-32 144.1 575 29.2
DCAR_006072 Daucus carota HOM05D000272 ORTHO05D000164 1.7e-31 141.7 422 33.6
FvH4_3g31640 Fragaria vesca HOM05D000272 ORTHO05D000164 2.9e-31 141.0 535 29.5
FAN16G2529 Fragaria x ananassa HOM05D000272 ORTHO05D000164 2.9e-31 141.0 529 30.4
Gorai.003G143600 Gossypium raimondii HOM05D000272 ORTHO05D000164 2.9e-31 141.0 508 32.1
FAN25G1983 Fragaria x ananassa HOM05D000272 ORTHO05D000164 6.5e-31 139.8 534 30.1
Lalb_Chr24g0394761 Lupinus albus HOM05D000272 ORTHO05D000164 1.1e-30 139.0 519 32.0
Gohir.D03G136500 Gossypium hirsutum HOM05D000272 ORTHO05D000164 5.5e-30 136.7 510 31.8
Gohir.A03G031800 Gossypium hirsutum HOM05D000272 ORTHO05D000164 7.2e-30 136.3 510 31.6
Oeu014005.1 Olea europaea HOM05D000272 ORTHO05D000164 3.5e-29 134.0 536 28.5
Sed0006566 Sechium edule HOM05D000272 ORTHO05D000164 6.7e-28 129.8 303 36.3
Aqoxy1G01194 Aquilegia oxysepala HOM05D000272 ORTHO05D000164 3.3e-27 127.5 520 28.7
Sabra04G0144100 Salix brachista HOM05D000272 ORTHO05D000164 2.2e-26 124.8 218 40.8
CsaV3_1G013780 Cucumis sativus L. HOM05D000272 ORTHO05D000164 4.1e-25 120.6 543 28.4
CDE08G0564 Ceratophyllum demersum HOM05D000272 ORTHO05D000164 1.2e-24 119.0 320 31.2
PGR119G1827 Punica granatum HOM05D000272 ORTHO05D000164 3.8e-23 114.0 421 30.2
Nitab4.5_0006628g0020 Nicotiana tabacum HOM05D000272 ORTHO05D000164 1.1e-22 112.5 458 27.9
Nitab4.5_0005283g0010 Nicotiana tabacum HOM05D000272 ORTHO05D000164 3.2e-22 110.9 458 27.9
Lsat_1_v5_gn_6_45461 Lactuca sativa HOM05D000272 ORTHO05D000164 5.5e-22 110.2 500 30.0
SalBow3G0972 Salvia bowleyana HOM05D000272 ORTHO05D000164 7.2e-22 109.8 495 28.3
Lj3g0017265 Lotus japonicus HOM05D000272 ORTHO05D000164 6.1e-21 106.7 503 28.6
Rhsim01G0214900 Rhododendron simsii HOM05D000272 ORTHO05D000164 3.0e-20 104.4 281 36.3
MSTRG.21108 Avicennia marina HOM05D000272 ORTHO05D000164 2.5e-19 101.3 534 27.7
Glyma.12G077800 Glycine max HOM05D000272 ORTHO05D000164 4.3e-19 100.5 515 28.5
HanXRQChr02g0055871 Helianthus annuus HOM05D000272 ORTHO05D000164 1.8e-17 95.1 268 32.8
HanXRQChr13g0396721 Helianthus annuus HOM05D000272 ORTHO05D000164 3.1e-17 94.4 295 31.5
Sabra04G0144200 Salix brachista HOM05D005571 ORTHO05D006919 2.0e-16 91.7 69 71.0
SHI20428 Sapria himalayana HOM05D000272 ORTHO05D000164 2.2e-15 88.2 197 39.6
Glyma.11G196300 Glycine max HOM05D000272 ORTHO05D000164 2.9e-15 87.8 530 26.4
ECA233G3483 Erigeron canadensis HOM05D000272 ORTHO05D000164 8.5e-15 86.3 297 32.3
Lalb_Chr03g0027521 Lupinus albus HOM05D000272 ORTHO05D000164 8.5e-15 86.3 512 28.9
Ca_19294_v3 Cicer arietinum L. HOM05D000272 ORTHO05D000164 1.1e-14 85.9 302 30.8
TPR.G6116 Trifolium pratense HOM05D000272 ORTHO05D000164 4.2e-14 84.0 325 28.0
Medtr2g095050 Medicago truncatula HOM05D000272 ORTHO05D000164 1.6e-13 82.0 158 38.0
THA.LOC104800591 Tarenaya hassleriana HOM05D000272 ORTHO05D000164 7.9e-13 79.7 532 27.3
Oeu049258.1 Olea europaea HOM05D000272 ORTHO05D000164 3.0e-12 77.8 487 26.7
Psat5g279880 Pisum sativum HOM05D000272 ORTHO05D000164 3.0e-12 77.8 278 27.0
TPR.G11509 Trifolium pratense HOM05D000272 ORTHO05D000164 3.9e-12 77.4 327 28.1
Oeu001293.1 Olea europaea HOM05D000272 ORTHO05D000164 1.1e-11 75.9 449 26.1
HPP92_022068 Vanilla planifolia HOM05D000272 ORTHO05D000164 2.6e-11 74.7 202 34.7
Hund08375 Selenicereus undatus HOM05D000272 ORTHO05D000164 4.4e-11 73.9 190 33.7
Lsat_1_v5_gn_2_98921 Lactuca sativa HOM05D000272 ORTHO05D000164 7.4e-11 73.2 121 38.8
SEGI_33490 Sequoiadendron giganteum HOM05D000272 ORTHO05D000164 7.4e-11 73.2 509 25.0
EL10Ac9g22564 Beta vulgaris HOM05D000272 ORTHO05D000164 1.7e-10 72.0 252 31.3
ATR0680G004 Amborella trichopoda HOM05D000272 ORTHO05D000164 3.7e-10 70.9 532 25.9
Migut.D02248 Erythranthe guttata HOM05D000272 ORTHO05D000164 1.1e-09 69.3 193 33.2
AUR62029222 Chenopodium quinoa HOM05D000272 ORTHO05D000164 1.4e-09 68.9 195 33.3
PGSC0003DMG400008057 Solanum tuberosum HOM05D000272 ORTHO05D000164 1.4e-09 68.9 394 25.6
CAN.G631.47 Capsicum annuum HOM05D000272 ORTHO05D000164 1.8e-09 68.6 301 26.6
Lj3g0022578 Lotus japonicus HOM05D000272 ORTHO05D000164 1.8e-09 68.6 302 27.2
Sopen11g028390 Solanum pennellii HOM05D000272 ORTHO05D000164 1.8e-09 68.6 396 24.2
Psat7g192320 Pisum sativum HOM05D000272 ORTHO05D000164 4.1e-09 67.4 162 34.0
TWI31G0707 Tripterygium wilfordii HOM05D000272 ORTHO05D000164 4.1e-09 67.4 196 32.7
Ah.01g003090 Amaranthus hybridus HOM05D000272 ORTHO05D000164 1.6e-08 65.5 196 32.1
ATR0210G020 Amborella trichopoda HOM05D000272 ORTHO05D000164 1.6e-08 65.5 545 25.1
CSS0028759 Camellia sinensis var. sinensis HOM05D000272 ORTHO05D000164 2.0e-08 65.1 113 42.5
BcaNung04458 Brassica carinata HOM05D000272 ORTHO05D000164 2.6e-08 64.7 65 50.8
BcaNung05704 Brassica carinata HOM05D000272 ORTHO05D000164 5.9e-08 63.5 65 49.2
A10p33530 Brassica napus HOM05D000272 ORTHO05D000164 5.9e-08 63.5 65 49.2
C09p74440 Brassica napus HOM05D000272 ORTHO05D000164 5.9e-08 63.5 65 49.2
BolC9t60176H Brassica oleracea HOM05D000272 ORTHO05D000164 5.9e-08 63.5 65 49.2
BraA10t45383Z Brassica rapa HOM05D000272 ORTHO05D000164 5.9e-08 63.5 65 49.2
AUR62022770 Chenopodium quinoa HOM05D000272 ORTHO05D000164 5.9e-08 63.5 121 38.0
A03p00470 Brassica napus HOM05D000272 ORTHO05D000164 1.3e-07 62.4 59 52.5
BraA03t09439Z Brassica rapa HOM05D000272 ORTHO05D000164 1.3e-07 62.4 59 52.5
CARHR211330 Cardamine hirsuta HOM05D000272 ORTHO05D000164 1.3e-07 62.4 59 52.5
HanXRQChr14g0452761 Helianthus annuus HOM05D000272 ORTHO05D000164 1.3e-07 62.4 138 36.2
AL6G11240 Arabidopsis lyrata HOM05D000272 ORTHO05D000164 2.2e-07 61.6 59 52.5
AT5G02030 Arabidopsis thaliana HOM05D000272 ORTHO05D000164 2.2e-07 61.6 59 52.5
CARHR120710 Cardamine hirsuta HOM05D000272 ORTHO05D000164 2.2e-07 61.6 330 28.5
Sp6g40400 Schrenkiella parvula HOM05D000272 ORTHO05D000164 2.2e-07 61.6 59 50.8
BcaB01g06077 Brassica carinata HOM05D000272 ORTHO05D000164 2.9e-07 61.2 59 52.5
Dinv37124 Davidia involucrata HOM05D000272 ORTHO05D000164 2.9e-07 61.2 58 50.0
Glyma.18G189700 Glycine max HOM05D000272 ORTHO05D000164 2.9e-07 61.2 45 60.0
Phvul.008G114300 Phaseolus vulgaris HOM05D000272 ORTHO05D000164 2.9e-07 61.2 106 40.6
BcaB05g21891 Brassica carinata HOM05D000272 ORTHO05D000164 3.8e-07 60.8 65 47.7
Thhalv10012876m.g Eutrema salsugineum HOM05D000272 ORTHO05D000164 3.8e-07 60.8 59 52.5
Potri.010G197300 Populus trichocarpa HOM05D000272 ORTHO05D000164 3.8e-07 60.8 31 80.6
SGA_v2.0_scaffold180G39621 Striga asiatica HOM05D000272 ORTHO05D000164 3.8e-07 60.8 158 32.9
Manes.07G122100 Manihot esculenta HOM05D000272 ORTHO05D000164 5.0e-07 60.5 40 65.0
Gohir.A01G221200 Gossypium hirsutum HOM05D000272 ORTHO05D000164 6.5e-07 60.1 77 44.2
Gohir.D01G210100 Gossypium hirsutum HOM05D000272 ORTHO05D000164 6.5e-07 60.1 69 47.8
Gorai.002G255800 Gossypium raimondii HOM05D000272 ORTHO05D000164 6.5e-07 60.1 75 45.3
C02p00350 Brassica napus HOM05D000272 ORTHO05D000164 8.5e-07 59.7 65 46.2
BolC2t06035H Brassica oleracea HOM05D000272 ORTHO05D000164 8.5e-07 59.7 65 46.2
Carub.0006s0088 Capsella rubella HOM05D000272 ORTHO05D000164 8.5e-07 59.7 59 49.2
Ciclev10011268m.g Citrus clementina HOM05D000272 ORTHO05D000164 8.5e-07 59.7 277 27.1
CiPaw.10G148900 Carya illinoinensis HOM05D000272 ORTHO05D000164 1.1e-06 59.3 71 43.7
Nn2g13517 Nelumbo nucifera HOM05D000272 ORTHO05D000164 1.1e-06 59.3 255 30.2
TAR623G0599 Trochodendron aralioides HOM05D000272 ORTHO05D000164 1.1e-06 59.3 57 49.1
BcaB01g06207 Brassica carinata HOM05D000272 ORTHO05D000164 1.5e-06 58.9 59 49.2
DCAR_018793 Daucus carota HOM05D000272 ORTHO05D000164 1.5e-06 58.9 193 31.1
Sabra10G0151500 Salix brachista HOM05D000272 ORTHO05D000164 1.5e-06 58.9 34 70.6
Sed0010674 Sechium edule HOM05D000272 ORTHO05D000164 1.5e-06 58.9 46 63.0
TPR.G31994 Trifolium pratense HOM05D000272 ORTHO05D000164 1.5e-06 58.9 34 73.5
arahy.Tifrunner.gnm1.ann1.AL7WCM Arachis hypogaea HOM05D000272 ORTHO05D000164 1.9e-06 58.5 58 50.0
arahy.Tifrunner.gnm1.ann1.F1F9U2 Arachis hypogaea HOM05D000272 ORTHO05D000164 1.9e-06 58.5 58 50.0
Cfa017307 Carpinus fangiana HOM05D000272 ORTHO05D000164 1.9e-06 58.5 36 66.7
CDE03G0122 Ceratophyllum demersum HOM05D000272 ORTHO05D000164 1.9e-06 58.5 106 38.7
Haze_20875 Corylus avellana HOM05D000272 ORTHO05D000164 1.9e-06 58.5 36 66.7
Migut.J00269 Erythranthe guttata HOM05D000272 ORTHO05D000164 1.9e-06 58.5 56 51.8
C03p00750 Brassica napus HOM05D000272 ORTHO05D000164 2.5e-06 58.2 59 50.8
BolC3t12638H Brassica oleracea HOM05D000272 ORTHO05D000164 2.5e-06 58.2 59 50.8
Ca_27160_v3 Cicer arietinum L. HOM05D000272 ORTHO05D000164 2.5e-06 58.2 141 34.8
Medtr7g065050 Medicago truncatula HOM05D000272 ORTHO05D000164 2.5e-06 58.2 34 70.6
Psat3g133160 Pisum sativum HOM05D000272 ORTHO05D000164 2.5e-06 58.2 34 70.6
CiPaw.09G200500 Carya illinoinensis HOM05D000272 ORTHO05D000164 3.2e-06 57.8 35 68.6
COL.COLO4_14705 Corchorus olitorius HOM05D000272 ORTHO05D000164 3.2e-06 57.8 185 32.4
Potri.008G061000 Populus trichocarpa HOM05D000272 ORTHO05D000164 3.2e-06 57.8 50 52.0
Hund13804 Selenicereus undatus HOM05D000272 ORTHO05D000164 3.2e-06 57.8 62 45.2
Lalb_Chr19g0125081 Lupinus albus HOM05D000272 ORTHO05D000164 4.2e-06 57.4 39 66.7
Phvul.010G011900 Phaseolus vulgaris HOM05D000272 ORTHO05D000164 4.2e-06 57.4 76 42.1
VMungo0331G1710 Vigna mungo HOM05D000272 ORTHO05D000164 4.2e-06 57.4 34 70.6
VMungo1383G2879 Vigna mungo HOM05D000272 ORTHO05D000164 4.2e-06 57.4 48 58.3
AL4G22210 Arabidopsis lyrata HOM05D000272 ORTHO05D000164 5.5e-06 57.0 131 35.9
CDE04G0684 Ceratophyllum demersum HOM05D000272 ORTHO05D000164 5.5e-06 57.0 156 34.6
Glyma.01G104200 Glycine max HOM05D000272 ORTHO05D000164 5.5e-06 57.0 112 38.4
Nn2g11279 Nelumbo nucifera HOM05D000272 ORTHO05D000164 5.5e-06 57.0 172 33.7
BraA02t04708Z Brassica rapa HOM05D000272 ORTHO05D000164 7.2e-06 56.6 65 44.6
Carub.0004s0875 Capsella rubella HOM05D000272 ORTHO05D000164 7.2e-06 56.6 310 28.1
COL.COLO4_03416 Corchorus olitorius HOM05D000272 ORTHO05D000164 7.2e-06 56.6 31 67.7
unitig_27.g24792 Utricularia gibba HOM05D000272 ORTHO05D000164 7.2e-06 56.6 69 39.1
Aa31LG1G22670 Aethionema arabicum HOM05D000272 ORTHO05D000164 9.4e-06 56.2 60 46.7
arahy.Tifrunner.gnm1.ann1.MA4NXX Arachis hypogaea HOM05D000272 ORTHO05D000164 9.4e-06 56.2 32 75.0
Nitab4.5_0004744g0010 Nicotiana tabacum HOM05D000272 ORTHO05D000164 9.4e-06 56.2 31 77.4
Sc01g0004760 Simmondsia chinensis HOM05D000272 ORTHO05D000164 9.4e-06 56.2 119 31.1
TWI74G0489 Tripterygium wilfordii HOM05D000272 ORTHO05D000164 9.4e-06 56.2 31 77.4
TWI77G0160 Tripterygium wilfordii HOM05D000272 ORTHO05D000164 9.4e-06 56.2 31 77.4


User provided reference genes

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