Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 5.7e-147 524.2 266 100.0
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 8.8e-140 500.4 266 95.1
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 4.0e-100 368.6 273 68.9
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 5.9e-96 354.8 279 67.4
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 2.3e-95 352.8 274 67.5
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 8.6e-95 350.9 236 74.2
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 3.1e-92 342.4 276 67.0
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 2.0e-91 339.7 272 65.4
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 3.4e-91 339.0 272 65.4
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 3.4e-91 339.0 236 73.3
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 4.4e-91 338.6 270 64.1
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 5.8e-91 338.2 274 66.4
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 2.4e-89 332.8 281 63.0
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 4.1e-89 332.0 273 64.1
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 1.6e-88 330.1 273 63.0
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 2.7e-88 329.3 277 64.6
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 3.5e-88 328.9 243 66.7
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 3.5e-88 328.9 278 65.5
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 7.8e-88 327.8 241 70.1
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 1.7e-87 326.6 258 64.0
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 2.3e-87 326.2 271 62.7
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 3.9e-87 325.5 230 70.9
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 1.1e-86 323.9 258 63.6
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 1.5e-86 323.6 242 66.9
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 1.9e-86 323.2 230 70.4
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 3.3e-86 322.4 271 64.2
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 4.3e-86 322.0 273 63.7
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 7.3e-86 321.2 229 70.7
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 1.2e-85 320.5 276 62.0
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 2.1e-85 319.7 240 66.2
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 2.1e-85 319.7 276 61.6
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.2e-85 318.2 276 61.2
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 1.4e-84 317.0 271 59.0
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 1.4e-84 317.0 230 69.6
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 2.3e-84 316.2 236 67.4
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 2.3e-84 316.2 225 69.3
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 5.2e-84 315.1 272 60.7
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 5.2e-84 315.1 229 69.0
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 8.9e-84 314.3 279 59.5
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.5e-83 313.5 242 66.9
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 3.4e-83 312.4 273 61.5
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 7.5e-83 311.2 239 66.1
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 7.5e-83 311.2 237 65.8
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 9.9e-83 310.8 231 68.0
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 2.2e-82 309.7 263 64.3
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 2.2e-82 309.7 267 59.2
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 2.9e-82 309.3 233 66.1
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 2.9e-82 309.3 236 65.3
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 6.4e-82 308.1 277 59.9
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 3.2e-81 305.8 234 63.7
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 1.2e-80 303.9 232 64.7
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 1.6e-80 303.5 229 67.2
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.0e-79 300.8 272 58.8
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 5.1e-79 298.5 234 62.8
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 5.1e-79 298.5 232 62.9
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 1.5e-78 297.0 276 59.1
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 1.9e-78 296.6 278 57.6
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 3.3e-78 295.8 206 71.8
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 7.3e-78 294.7 230 62.6
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 2.1e-77 293.1 278 56.1
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 4.7e-77 292.0 278 56.5
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 1.1e-76 290.8 230 61.7
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 1.8e-76 290.0 230 61.7
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 1.8e-76 290.0 272 56.2
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 3.1e-76 289.3 230 61.7
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 4.0e-76 288.9 277 55.6
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.2e-75 287.3 240 61.7
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.2e-75 287.3 277 54.9
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 2.0e-75 286.6 278 55.4
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 2.0e-75 286.6 274 57.3
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 2.6e-75 286.2 230 61.3
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 4.4e-75 285.4 230 61.7
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 7.6e-75 284.6 240 61.2
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 7.6e-75 284.6 241 57.7
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 9.9e-75 284.3 264 57.2
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 2.9e-74 282.7 230 61.3
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 2.9e-74 282.7 230 61.3
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 2.9e-74 282.7 224 66.1
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.9e-74 282.0 239 61.1
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 6.4e-74 281.6 271 56.5
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 7.1e-73 278.1 270 54.1
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 7.1e-73 278.1 231 61.9
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 1.2e-72 277.3 198 69.7
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 1.6e-72 276.9 276 52.9
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 3.5e-72 275.8 198 70.7
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 1.8e-68 263.5 185 71.4
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 5.2e-68 261.9 274 56.2
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 2.6e-67 259.6 218 59.2
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.3e-66 257.3 186 70.4
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 2.2e-66 256.5 218 59.2
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 4.9e-66 255.4 241 56.8
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 1.1e-65 254.2 240 55.4
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 7.1e-65 251.5 298 48.7
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 1.2e-64 250.8 244 52.9
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 4.6e-64 248.8 229 55.5
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.7e-63 246.9 192 62.0
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.5e-62 243.0 186 65.6
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 5.3e-60 235.3 250 49.6
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.4e-59 232.6 180 65.0
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.2e-58 229.9 226 55.8
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 1.5e-51 207.2 159 66.0
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.8e-51 205.3 234 52.6
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.1e-49 198.4 215 55.3
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.8e-47 193.7 124 76.6
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 1.3e-42 177.6 122 71.3
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 2.2e-42 176.8 142 62.7
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 1.4e-36 157.5 211 38.9
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.9e-36 155.2 173 51.4
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.6e-32 144.1 124 59.7
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 3.9e-31 139.4 155 51.6
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 5.1e-31 139.0 115 60.0
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.7e-31 138.7 119 63.0
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-28 130.2 251 39.8
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.7e-24 115.9 70 74.3
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.7e-21 107.5 86 64.0
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.1e-20 103.2 110 50.0
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.1e-20 101.7 103 52.4
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-18 97.1 136 45.6
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.0e-18 95.9 74 63.5
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 6.5e-18 95.5 92 52.2
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 5.5e-17 92.4 82 52.4
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 3.6e-16 89.7 109 52.3
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-15 87.8 122 44.3
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 4.4e-14 82.8 91 46.2
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.2e-13 80.5 67 56.7
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-13 80.5 102 47.1
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.1e-12 76.6 88 52.3
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.7e-10 70.9 137 32.8
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.9e-10 70.1 133 34.6
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 3.8e-10 69.7 47 63.8
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 5.5e-09 65.9 46 60.9
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 5.5e-09 65.9 46 60.9
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.7e-08 63.5 87 42.5
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 1.8e-07 60.8 53 49.1
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 1.8e-07 60.8 53 49.1
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 2.3e-07 60.5 51 60.8
Gohir.A01G109901 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.0e-07 60.1 89 44.9


User provided reference genes

Program Settings