Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 2.8e-211 738.4 395 100.0
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 4.6e-193 677.9 395 91.9
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 1.6e-153 546.6 400 74.5
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 2.7e-153 545.8 384 77.6
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 3.0e-152 542.3 395 75.4
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 4.8e-150 535.0 404 72.0
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 4.5e-148 528.5 404 70.0
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 1.3e-144 516.9 407 71.5
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 1.5e-143 513.5 398 68.6
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 1.5e-143 513.5 403 70.2
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 7.4e-143 511.1 412 68.4
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 9.6e-143 510.8 396 70.5
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 2.1e-142 509.6 405 70.1
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 2.8e-142 509.2 410 69.8
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 3.7e-142 508.8 403 69.0
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 9.0e-141 504.2 395 68.9
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 7.6e-140 501.1 400 68.0
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 1.0e-139 500.7 400 68.0
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 1.3e-139 500.4 400 67.5
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.3e-139 500.4 400 67.5
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 1.4e-138 496.9 351 76.6
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 3.2e-138 495.7 395 66.8
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 3.2e-138 495.7 398 66.6
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 7.1e-138 494.6 413 68.3
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 1.2e-137 493.8 405 66.9
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 6.0e-137 491.5 396 66.2
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 1.3e-136 490.3 345 74.5
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 3.9e-136 488.8 349 71.6
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 6.7e-136 488.0 398 66.8
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 1.5e-135 486.9 371 70.1
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 1.5e-135 486.9 346 74.0
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 2.5e-135 486.1 371 70.6
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 4.3e-135 485.3 391 68.0
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 4.3e-135 485.3 395 66.3
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 7.4e-135 484.6 345 72.8
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 2.2e-134 483.0 353 71.4
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 2.2e-134 483.0 387 67.2
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.8e-134 482.6 419 63.5
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 6.3e-134 481.5 375 69.6
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 2.4e-133 479.6 362 71.0
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 1.2e-132 477.2 346 72.5
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 3.4e-132 475.7 340 72.1
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 5.9e-132 474.9 367 70.0
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 7.6e-132 474.6 372 67.7
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 1.0e-131 474.2 346 72.3
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 1.0e-131 474.2 403 63.8
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 1.0e-131 474.2 402 64.9
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 3.8e-131 472.2 346 72.5
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 3.8e-131 472.2 346 72.5
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 5.0e-131 471.9 335 73.7
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 5.0e-131 471.9 344 71.5
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 3.2e-130 469.2 403 63.0
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 5.5e-130 468.4 344 70.6
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 1.2e-129 467.2 360 70.6
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 4.6e-129 465.3 367 68.9
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 4.6e-129 465.3 403 63.3
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 1.0e-128 464.2 367 68.7
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 5.1e-128 461.8 400 63.5
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 3.3e-127 459.1 318 75.8
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 2.2e-126 456.4 367 66.5
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 3.4e-124 449.1 350 71.1
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 6.5e-123 444.9 370 65.4
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 1.2e-121 440.7 359 68.8
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 6.1e-121 438.3 350 68.3
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 6.7e-120 434.9 361 64.0
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 2.0e-119 433.3 359 65.2
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 5.7e-119 431.8 352 64.5
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 2.4e-117 426.4 413 61.5
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 4.1e-117 425.6 325 67.1
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 5.3e-117 425.2 413 61.3
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 2.6e-116 422.9 418 59.1
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 5.9e-116 421.8 321 68.2
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 7.7e-116 421.4 355 65.9
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 1.1e-114 417.5 328 67.1
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 9.7e-111 404.4 302 69.5
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 1.3e-110 404.1 362 63.3
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 8.2e-110 401.4 350 60.6
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 1.4e-109 400.6 343 61.5
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 1.4e-109 400.6 343 61.8
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 3.1e-109 399.4 379 58.8
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 2.0e-108 396.7 337 62.9
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 2.0e-108 396.7 343 60.9
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 2.6e-108 396.4 334 62.6
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 5.9e-108 395.2 268 76.9
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 3.8e-107 392.5 319 66.8
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 5.0e-107 392.1 407 54.5
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 5.0e-107 392.1 392 56.1
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 2.1e-105 386.7 364 56.9
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 2.7e-100 369.8 294 68.4
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 3.5e-100 369.4 341 55.7
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 1.8e-96 357.1 313 62.6
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 2.3e-96 356.7 264 71.6
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 1.5e-95 354.0 368 54.3
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 2.3e-91 340.1 381 53.5
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 6.1e-89 332.0 317 54.9
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 1.3e-86 324.3 262 66.8
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 3.7e-86 322.8 317 58.4
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 1.8e-85 320.5 304 53.0
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 3.8e-83 312.8 348 48.3
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 5.0e-83 312.4 198 80.3
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 2.4e-77 293.5 319 55.2
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 1.6e-76 290.8 199 75.4
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 2.0e-76 290.4 337 49.0
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 2.1e-73 280.4 330 46.1
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 4.0e-72 276.2 290 53.8
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 4.0e-72 276.2 179 79.9
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 7.5e-71 271.9 283 57.6
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 3.0e-67 260.0 163 85.3
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 1.9e-66 257.3 266 55.3
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 5.6e-66 255.8 200 69.5
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 1.8e-64 250.8 237 59.5
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 6.0e-52 209.1 314 37.6
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 1.7e-43 181.0 330 41.8
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 3.9e-43 179.9 282 36.9
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 1.4e-40 171.4 263 35.4
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.5e-39 167.9 149 59.7
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 6.9e-32 142.5 252 41.3
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 3.4e-31 140.2 105 71.4
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 2.3e-27 127.5 119 56.3
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.5e-26 124.8 84 78.6
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 9.6e-26 122.1 238 39.9
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.8e-24 117.9 84 73.8
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 1.6e-12 78.2 61 62.3
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 2.7e-12 77.4 72 52.8
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 1.8e-08 64.7 46 67.4
Medtr2g021155 Medicago truncatula HOM05D000007 ORTHO05D000017 5.9e-07 59.7 43 67.4


User provided reference genes

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