Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0157600 Salix brachista HOM05D004695 ORTHO05D005372 1.0e-82 310.1 158 100.0
Potri.008G204100 Populus trichocarpa HOM05D004695 ORTHO05D005372 1.2e-40 170.2 108 82.4
Gorai.003G047400 Gossypium raimondii HOM05D004695 ORTHO05D005372 1.2e-30 137.1 111 67.6
Thecc.01G113400 Theobroma cacao HOM05D004695 ORTHO05D005372 3.4e-30 135.6 111 69.4
Gohir.A02G135400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 9.8e-30 134.0 111 66.7
Gohir.D03G046400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 1.7e-29 133.3 111 66.7
Duzib264G0758 Durio zibethinus HOM05D004695 ORTHO05D005372 3.2e-28 129.0 115 66.1
COL.COLO4_11008 Corchorus olitorius HOM05D004695 ORTHO05D005372 9.2e-28 127.5 116 65.5
Thecc.04G224700 Theobroma cacao HOM05D004695 ORTHO05D005372 9.2e-28 127.5 96 71.9
Duzib147G1031 Durio zibethinus HOM05D004695 ORTHO05D005372 5.9e-27 124.8 121 62.8
Gohir.A10G084407 Gossypium hirsutum HOM05D004695 ORTHO05D005372 5.0e-26 121.7 115 61.7
Manes.03G182700 Manihot esculenta HOM05D004695 ORTHO05D005372 5.0e-26 121.7 111 64.0
Gorai.011G113700 Gossypium raimondii HOM05D004695 ORTHO05D005372 6.6e-26 121.3 115 62.6
Gohir.D10G104100 Gossypium hirsutum HOM05D004695 ORTHO05D005372 1.9e-25 119.8 115 61.7
Ciclev10006235m.g Citrus clementina HOM05D004695 ORTHO05D005372 2.5e-25 119.4 113 64.6
Manes.15G024700 Manihot esculenta HOM05D004695 ORTHO05D005372 5.6e-25 118.2 111 65.8
GSVIVG01017906001 Vitis vinifera HOM05D004695 ORTHO05D005372 7.3e-25 117.9 111 63.1
Aqoxy2G03294 Aquilegia oxysepala HOM05D004695 ORTHO05D005372 8.0e-24 114.4 112 60.7
COL.COLO4_26631 Corchorus olitorius HOM05D004695 ORTHO05D005372 1.2e-22 110.5 85 70.6
Duzib187G0357 Durio zibethinus HOM05D004695 ORTHO05D005372 1.2e-22 110.5 115 62.6
MD13G1185600 Malus domestica HOM05D004695 ORTHO05D005372 2.0e-22 109.8 114 59.6
QL06p003781 Quercus lobata HOM05D004695 ORTHO05D005372 2.0e-22 109.8 112 62.5
TWI73G0302 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 7.5e-22 107.8 133 57.1
TAR636G3528 Trochodendron aralioides HOM05D004695 ORTHO05D005372 1.7e-21 106.7 92 65.2
VMungo0540G1940 Vigna mungo HOM05D004695 ORTHO05D005372 1.7e-21 106.7 111 55.9
TWI09G0501 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 2.9e-21 105.9 118 57.6
Glyma.13G207100 Glycine max HOM05D004695 ORTHO05D005372 4.9e-21 105.1 112 55.4
Hma1.2p1_0995F.1_g245790 Hydrangea macrophylla HOM05D004695 ORTHO05D005372 4.9e-21 105.1 111 55.9
Phvul.006G151900 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 6.4e-21 104.8 110 55.5
CANSAT78G0872 Cannabis sativa HOM05D004695 ORTHO05D005372 8.3e-21 104.4 92 64.1
Glyma.15G105500 Glycine max HOM05D004695 ORTHO05D005372 8.3e-21 104.4 111 55.9
Lalb_Chr18g0056181 Lupinus albus HOM05D004695 ORTHO05D005372 8.3e-21 104.4 110 54.5
Glyma.07G258100 Glycine max HOM05D004695 ORTHO05D005372 1.1e-20 104.0 105 58.1
RcHm_v2.0_Chr4g0417511 Rosa chinensis HOM05D004695 ORTHO05D005372 1.4e-20 103.6 118 55.9
Atru.chr4.2536 Acer truncatum HOM05D004695 ORTHO05D005372 3.2e-20 102.4 95 64.2
Prupe.1G153300 Prunus persica HOM05D004695 ORTHO05D005372 4.1e-20 102.1 111 58.6
Medtr4g131720 Medicago truncatula HOM05D004695 ORTHO05D005372 5.4e-20 101.7 109 56.0
FvH4_4g14800 Fragaria vesca HOM05D004695 ORTHO05D005372 2.0e-19 99.8 116 56.0
FAN12G3688 Fragaria x ananassa HOM05D004695 ORTHO05D005372 2.0e-19 99.8 116 56.0
Nn1g02189 Nelumbo nucifera HOM05D004695 ORTHO05D005372 2.0e-19 99.8 110 58.2
Medtr2g022610 Medicago truncatula HOM05D004695 ORTHO05D005372 3.5e-19 99.0 110 49.1
Peaxi162Scf00134g02026 Petunia axillaris HOM05D004695 ORTHO05D005372 3.5e-19 99.0 111 54.1
CiPaw.01G161500 Carya illinoinensis HOM05D004695 ORTHO05D005372 4.6e-19 98.6 115 57.4
Phvul.003G091400 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 6.0e-19 98.2 114 53.5
TPR.G912 Trifolium pratense HOM05D004695 ORTHO05D005372 6.0e-19 98.2 118 46.6
FAN22G2275 Fragaria x ananassa HOM05D004695 ORTHO05D005372 7.8e-19 97.8 116 55.2
Lalb_Chr15g0087411 Lupinus albus HOM05D004695 ORTHO05D005372 7.8e-19 97.8 110 52.7
Psat1g182680 Pisum sativum HOM05D004695 ORTHO05D005372 7.8e-19 97.8 110 50.9
Ca_00631_v3 Cicer arietinum L. HOM05D004695 ORTHO05D005372 1.3e-18 97.1 111 49.5
TPR.G36993 Trifolium pratense HOM05D004695 ORTHO05D005372 2.3e-18 96.3 109 53.2
Actinidia23502 Actinidia chinensis HOM05D004695 ORTHO05D005372 3.9e-18 95.5 119 48.7
Eucgr.B01119 Eucalyptus grandis HOM05D004695 ORTHO05D005372 3.9e-18 95.5 114 52.6
PGR142G2632 Punica granatum HOM05D004695 ORTHO05D005372 5.0e-18 95.1 106 56.6
FAN07G1591 Fragaria x ananassa HOM05D004695 ORTHO05D005372 8.6e-18 94.4 115 55.7
Haze_00944 Corylus avellana HOM05D004695 ORTHO05D005372 1.1e-17 94.0 116 53.4
Cc03_g03270 Coffea canephora HOM05D004695 ORTHO05D005372 1.5e-17 93.6 109 51.4
Nitab4.5_0000630g0080 Nicotiana tabacum HOM05D004695 ORTHO05D005372 1.9e-17 93.2 109 51.4
Rhsim04G0203400 Rhododendron simsii HOM05D004695 ORTHO05D005372 2.5e-17 92.8 111 51.4
EL10As3g23294 Beta vulgaris HOM05D004695 ORTHO05D005372 1.2e-16 90.5 111 50.5
PGSC0003DMG400008993 Solanum tuberosum HOM05D004695 ORTHO05D005372 2.1e-16 89.7 99 54.5
THA.LOC104818805 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 2.1e-16 89.7 125 48.8
Lj4g0022767 Lotus japonicus HOM05D004695 ORTHO05D005372 2.8e-16 89.4 109 49.5
arahy.Tifrunner.gnm1.ann1.NGDM9G Arachis hypogaea HOM05D004695 ORTHO05D005372 3.6e-16 89.0 91 54.9
arahy.Tifrunner.gnm1.ann1.P3SWUI Arachis hypogaea HOM05D004695 ORTHO05D005372 3.6e-16 89.0 91 54.9
Actinidia36986 Actinidia chinensis HOM05D004695 ORTHO05D005372 4.7e-16 88.6 102 55.9
VMungo1215G1766 Vigna mungo HOM05D004695 ORTHO05D005372 4.7e-16 88.6 102 52.9
Cfa015601 Carpinus fangiana HOM05D004695 ORTHO05D005372 8.1e-16 87.8 113 52.2
Solyc01g079830.3 Solanum lycopersicum HOM05D004695 ORTHO05D005372 1.1e-15 87.4 133 45.1
THA.LOC104822307 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 1.1e-15 87.4 111 49.5
Dinv44493 Davidia involucrata HOM05D003236 ORTHO05D003620 1.4e-15 87.0 73 67.1
MBI19_g16320_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 1.4e-15 87.0 111 51.4
CiPaw.02G093500 Carya illinoinensis HOM05D004695 ORTHO05D005372 3.1e-15 85.9 116 54.3
MBI19_g46840_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 3.1e-15 85.9 111 50.5
Lj6g0025020 Lotus japonicus HOM05D004695 ORTHO05D005372 4.0e-15 85.5 105 46.7
MBI17_g29941_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 8.9e-15 84.3 100 49.0
ClCG05G005340 Citrullus lanatus HOM05D004695 ORTHO05D005372 1.2e-14 84.0 116 48.3
Thhalv10014937m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 1.5e-14 83.6 115 47.0
BcaB01g05138 Brassica carinata HOM05D004695 ORTHO05D005372 2.6e-14 82.8 104 50.0
C03p10990 Brassica napus HOM05D004695 ORTHO05D005372 2.6e-14 82.8 104 50.0
BolC3t13568H Brassica oleracea HOM05D004695 ORTHO05D005372 2.6e-14 82.8 104 50.0
Carub.0006s1752 Capsella rubella HOM05D004695 ORTHO05D005372 3.4e-14 82.4 104 46.2
CsaV3_3G013590 Cucumis sativus L. HOM05D004695 ORTHO05D005372 4.4e-14 82.0 117 47.0
AL6G30640 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 5.8e-14 81.6 104 50.0
Cpa.g.sc147.16 Carica papaya HOM05D004695 ORTHO05D005372 9.8e-14 80.9 77 61.0
SGA_v2.0_scaffold39G15314 Striga asiatica HOM05D004695 ORTHO05D005372 9.8e-14 80.9 119 45.4
AT5G19190 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 1.3e-13 80.5 104 49.0
Dinv38408 Davidia involucrata HOM05D004695 ORTHO05D005372 2.2e-13 79.7 85 54.1
Thhalv10021691m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 2.9e-13 79.3 105 50.5
AL3G16910 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 3.7e-13 79.0 105 48.6
Sed0015868 Sechium edule HOM05D004695 ORTHO05D005372 4.9e-13 78.6 118 44.9
BcaB08g36595 Brassica carinata HOM05D004695 ORTHO05D005372 8.3e-13 77.8 117 44.4
BcaC04g18589 Brassica carinata HOM05D004695 ORTHO05D005372 1.1e-12 77.4 117 43.6
C09p57070 Brassica napus HOM05D004695 ORTHO05D005372 1.1e-12 77.4 117 43.6
Psat4g008520 Pisum sativum HOM05D004695 ORTHO05D005372 1.1e-12 77.4 112 50.0
DCAR_030605 Daucus carota HOM05D004695 ORTHO05D005372 1.4e-12 77.0 115 43.5
HanXRQChr12g0359551 Helianthus annuus HOM05D004695 ORTHO05D005372 1.4e-12 77.0 77 61.0
A02p05310 Brassica napus HOM05D004695 ORTHO05D005372 1.9e-12 76.6 127 41.7
BraA02t05489Z Brassica rapa HOM05D004695 ORTHO05D005372 1.9e-12 76.6 115 42.6
CARHR193760 Cardamine hirsuta HOM05D004695 ORTHO05D005372 1.9e-12 76.6 120 42.5
Sp6g25190 Schrenkiella parvula HOM05D004695 ORTHO05D005372 1.9e-12 76.6 103 47.6
AT3G06070 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 2.4e-12 76.3 99 48.5
DCAR_002402 Daucus carota HOM05D004695 ORTHO05D005372 2.4e-12 76.3 111 43.2
arahy.Tifrunner.gnm1.ann1.6BH6U4 Arachis hypogaea HOM05D004695 ORTHO05D005372 3.2e-12 75.9 122 47.5
A10p20440 Brassica napus HOM05D004695 ORTHO05D005372 4.1e-12 75.5 117 42.7
BraA10t44114Z Brassica rapa HOM05D004695 ORTHO05D005372 4.1e-12 75.5 117 42.7
A03p09410 Brassica napus HOM05D004695 ORTHO05D005372 5.4e-12 75.1 104 46.2
BraA03t10259Z Brassica rapa HOM05D004695 ORTHO05D005372 5.4e-12 75.1 104 46.2
Nitab4.5_0015975g0010 Nicotiana tabacum HOM05D004695 ORTHO05D005372 5.4e-12 75.1 113 46.9
SalBow2G2333 Salvia bowleyana HOM05D004695 ORTHO05D005372 5.4e-12 75.1 111 48.6
C05p61180 Brassica napus HOM05D004695 ORTHO05D005372 7.1e-12 74.7 106 41.5
Carub.0003s0551 Capsella rubella HOM05D004695 ORTHO05D005372 7.1e-12 74.7 115 43.5
PSO302G0161 Papaver somniferum HOM05D004695 ORTHO05D005372 7.1e-12 74.7 119 49.6
AUR62038192 Chenopodium quinoa HOM05D004695 ORTHO05D005372 9.2e-12 74.3 93 49.5
MSTRG.10006 Avicennia marina HOM05D004695 ORTHO05D005372 1.2e-11 73.9 113 45.1
BcaC05g30060 Brassica carinata HOM05D004695 ORTHO05D005372 1.6e-11 73.6 113 44.2
DCAR_027181 Daucus carota HOM05D004695 ORTHO05D005372 1.6e-11 73.6 98 49.0
PSO170G6030 Papaver somniferum HOM05D004695 ORTHO05D005372 2.1e-11 73.2 111 47.7
HanXRQChr10g0311131 Helianthus annuus HOM05D004695 ORTHO05D005372 3.5e-11 72.4 107 48.6
BcaB05g23377 Brassica carinata HOM05D004695 ORTHO05D005372 1.0e-10 70.9 123 39.0
A05p41930 Brassica napus HOM05D004695 ORTHO05D005372 1.3e-10 70.5 113 42.5
CARHR080580 Cardamine hirsuta HOM05D004695 ORTHO05D005372 1.3e-10 70.5 96 44.8
Sc19g0004420 Simmondsia chinensis HOM05D004695 ORTHO05D005372 1.7e-10 70.1 106 41.5
A03p34500 Brassica napus HOM05D004695 ORTHO05D005372 3.0e-10 69.3 83 48.2
BraA03t12627Z Brassica rapa HOM05D004695 ORTHO05D005372 3.0e-10 69.3 83 48.2
Aa31LG11G10450 Aethionema arabicum HOM05D004695 ORTHO05D005372 3.9e-10 68.9 96 42.7
HPP92_003158 Vanilla planifolia HOM05D004695 ORTHO05D005372 3.9e-10 68.9 114 38.6
BcaC03g13650 Brassica carinata HOM05D004695 ORTHO05D005372 5.1e-10 68.6 116 42.2
BNapus_Darmor_BZH_scaffold_38p02720 Brassica napus HOM05D004695 ORTHO05D005372 5.1e-10 68.6 129 40.3
BolC2t06944H Brassica oleracea HOM05D004695 ORTHO05D005372 5.1e-10 68.6 129 40.3
Sp3g05020 Schrenkiella parvula HOM05D004695 ORTHO05D005372 6.6e-10 68.2 106 42.5
Aa31LG5G16560 Aethionema arabicum HOM05D004695 ORTHO05D005372 1.5e-09 67.0 86 43.0
BcaC01g04322 Brassica carinata HOM05D004695 ORTHO05D005372 1.5e-09 67.0 94 47.9
C03p41960 Brassica napus HOM05D004695 ORTHO05D005372 1.5e-09 67.0 94 47.9
BolC3t16478H Brassica oleracea HOM05D004695 ORTHO05D005372 1.5e-09 67.0 94 47.9
BcaB01g04872 Brassica carinata HOM05D004695 ORTHO05D005372 1.9e-09 66.6 117 38.5
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 5.6e-09 65.1 79 54.4
Migut.N00157 Erythranthe guttata HOM05D004695 ORTHO05D005372 1.6e-08 63.5 118 39.8
BcaB04g19218 Brassica carinata HOM05D004695 ORTHO05D005372 2.8e-08 62.8 127 41.7
BcaB04g19219 Brassica carinata HOM05D004695 ORTHO05D005372 2.8e-08 62.8 127 41.7
Oeu042788.1 Olea europaea HOM05D004695 ORTHO05D005372 2.8e-08 62.8 96 44.8
Migut.G00305 Erythranthe guttata HOM05D004695 ORTHO05D005372 6.2e-08 61.6 126 37.3
Peaxi162Scf00134g00214 Petunia axillaris HOM05D004695 ORTHO05D005372 6.2e-08 61.6 73 45.2
BraA01t04453Z Brassica rapa HOM05D004695 ORTHO05D005372 1.8e-07 60.1 106 39.6
BcaC09g47874 Brassica carinata HOM05D004695 ORTHO05D005372 3.1e-07 59.3 99 41.4
BolC1t05639H Brassica oleracea HOM05D004695 ORTHO05D005372 3.1e-07 59.3 99 41.4
HPP92_000387 Vanilla planifolia HOM05D004695 ORTHO05D005372 3.1e-07 59.3 85 48.2
SGA_v2.0_scaffold39G15310 Striga asiatica HOM05D004695 ORTHO05D005372 4.0e-07 58.9 91 37.4
BcaB04g21321 Brassica carinata HOM05D004695 ORTHO05D005372 6.8e-07 58.2 96 43.8
unitig_32.g11733 Utricularia gibba HOM05D004695 ORTHO05D005372 6.8e-07 58.2 108 41.7
unitig_748.g8553 Utricularia gibba HOM05D004695 ORTHO05D005372 2.0e-06 56.6 97 45.4
arahy.Tifrunner.gnm1.ann1.P7T279 Arachis hypogaea HOM05D004695 ORTHO05D005372 4.4e-06 55.5 114 43.0


User provided reference genes

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