Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 1.1e-311 1072.4 560 100.0
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.3e-305 1052.4 560 98.0
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.3e-294 1015.8 560 93.4
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 4.5e-279 964.1 560 87.9
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 2.7e-276 954.9 562 87.9
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.7e-271 938.3 562 86.3
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 3.5e-271 937.9 562 85.2
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 8.0e-268 926.8 563 85.8
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 1.8e-267 925.6 562 85.2
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 2.6e-266 921.8 561 84.5
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 5.4e-264 914.1 561 84.1
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 5.4e-264 914.1 561 84.1
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 9.1e-264 913.3 561 84.5
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 2.7e-263 911.8 561 83.4
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 2.5e-261 905.2 600 79.3
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 9.5e-261 903.3 561 82.2
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 4.7e-260 901.0 560 82.7
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 1.5e-258 896.0 562 84.5
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 2.8e-257 891.7 562 81.3
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 9.2e-256 886.7 562 82.9
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 5.9e-255 884.0 562 80.4
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 1.0e-254 883.2 561 81.6
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 2.8e-252 875.2 561 79.7
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 6.1e-252 874.0 562 80.2
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 1.4e-251 872.8 562 80.8
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 2.3e-251 872.1 626 74.3
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 2.3e-251 872.1 561 80.4
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 3.0e-251 871.7 561 80.9
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 6.8e-251 870.5 562 81.7
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 6.8e-251 870.5 561 79.5
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 1.5e-250 869.4 557 81.7
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 2.6e-250 868.6 561 79.7
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 1.3e-249 866.3 562 79.7
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 1.6e-247 859.4 561 79.3
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 2.0e-247 859.0 561 79.7
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 2.0e-247 859.0 562 79.4
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 2.7e-247 858.6 561 79.0
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 1.0e-246 856.7 562 79.5
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 1.7e-246 855.9 560 78.4
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 8.6e-246 853.6 561 78.8
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 2.5e-245 852.0 574 77.9
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 5.6e-245 850.9 560 79.5
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 5.6e-245 850.9 561 77.4
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 2.1e-244 849.0 562 77.2
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 2.3e-243 845.5 562 76.9
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 5.2e-243 844.3 561 77.9
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 1.2e-242 843.2 542 81.2
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 2.6e-242 842.0 561 77.7
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 4.4e-242 841.3 515 83.7
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 2.2e-241 839.0 565 78.1
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 3.2e-240 835.1 613 74.2
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 4.1e-240 834.7 557 78.3
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 5.4e-240 834.3 560 77.5
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 7.8e-239 830.5 561 76.3
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 7.8e-239 830.5 561 76.3
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.0e-238 828.6 560 77.9
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 8.6e-238 827.0 562 75.1
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 1.2e-236 823.2 565 76.3
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 1.2e-234 816.6 540 77.4
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 1.7e-233 812.8 562 76.2
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 8.3e-233 810.4 576 75.7
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 1.4e-232 809.7 561 75.6
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.9e-232 809.3 557 76.8
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 4.6e-231 804.7 562 75.6
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 7.8e-231 803.9 561 75.0
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 4.3e-229 798.1 561 74.3
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 9.5e-229 797.0 566 73.0
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 9.5e-229 797.0 513 79.5
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 2.1e-228 795.8 561 74.3
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 1.1e-227 793.5 648 67.3
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 3.1e-227 792.0 562 74.2
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 1.2e-226 790.0 562 73.7
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 1.2e-226 790.0 562 73.7
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 2.0e-226 789.3 511 80.2
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 3.4e-226 788.5 562 73.3
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 8.4e-225 783.9 514 78.4
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 9.2e-224 780.4 576 72.0
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 9.2e-224 780.4 561 72.9
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 1.2e-223 780.0 561 73.8
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 2.3e-222 775.8 562 72.8
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 2.3e-222 775.8 561 72.7
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 2.3e-222 775.8 561 72.7
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 6.6e-222 774.2 562 71.4
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 1.2e-220 770.0 532 75.4
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 4.7e-220 768.1 546 72.7
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 4.4e-218 761.5 562 70.3
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 2.9e-217 758.8 562 68.7
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 2.5e-213 745.7 531 72.7
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 9.9e-210 733.8 595 69.2
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 3.0e-198 695.7 476 75.2
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 6.9e-195 684.5 393 88.8
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 4.8e-180 635.2 455 69.7
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 1.3e-177 627.1 434 72.4
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 4.2e-176 622.1 562 58.4
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 2.3e-174 616.3 563 57.9
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 3.6e-167 592.4 569 55.5
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 9.7e-165 584.3 553 58.8
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 2.9e-161 572.8 563 54.5
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.4e-155 553.9 339 85.0
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 2.1e-151 540.0 382 73.3
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 2.3e-150 536.6 566 49.8
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 5.2e-142 508.8 523 58.7
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 1.1e-139 501.1 306 85.3
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 1.0e-129 468.0 349 69.6
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 2.4e-123 446.8 356 62.1
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 1.0e-121 441.4 341 67.7
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 3.4e-101 373.2 260 71.5
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 9.6e-88 328.6 551 38.3
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 1.1e-75 288.5 208 75.5
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 1.8e-73 281.2 197 74.1
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 3.2e-67 260.4 141 87.2
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 1.5e-64 251.5 200 70.0
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.9e-59 234.6 182 61.0
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.6e-56 224.2 129 86.8
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 1.6e-42 178.3 160 63.1
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 4.2e-35 153.7 180 51.1
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 1.0e-33 149.1 158 55.7
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 1.0e-33 149.1 158 55.7
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 1.0e-33 149.1 89 74.2
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 1.4e-33 148.7 178 50.0
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.0e-32 144.8 90 78.9
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 1.6e-29 135.2 130 61.5
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 8.6e-28 129.4 167 48.5
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 9.8e-24 115.9 77 71.4
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 4.1e-22 110.5 58 91.4
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.5e-19 102.1 128 49.2
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 2.5e-19 101.3 87 65.5
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.6e-18 97.4 90 58.9
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 2.2e-15 88.2 77 59.7
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 2.3e-09 68.2 159 25.8
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 5.8e-08 63.5 160 25.0
SEGI_03047 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.1e-06 59.3 47 70.2
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 1.9e-06 58.5 159 23.3
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 1.9e-06 58.5 170 22.9
Peaxi162Scf00017g02211 Petunia axillaris HOM05D004454 ORTHO05D005462 1.9e-06 58.5 160 22.5
HanXRQChr14g0438801 Helianthus annuus HOM05D004454 ORTHO05D005462 7.0e-06 56.6 162 22.8


User provided reference genes

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