Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0153900 Salix brachista HOM05D003190 ORTHO05D003745 1.1e-67 260.0 153 100.0
Potri.003G081066 Populus trichocarpa HOM05D003190 ORTHO05D003745 2.9e-18 95.9 60 81.7
Rhsim07G0035600 Rhododendron simsii HOM05D003190 ORTHO05D003745 1.1e-17 94.0 60 73.3
Atru.chr5.131 Acer truncatum HOM05D003190 ORTHO05D003745 1.4e-17 93.6 62 69.4
Gohir.D12G099800 Gossypium hirsutum HOM05D003190 ORTHO05D003745 2.4e-17 92.8 62 69.4
Gorai.008G108700 Gossypium raimondii HOM05D003190 ORTHO05D003745 2.4e-17 92.8 62 69.4
Dinv43620 Davidia involucrata HOM05D003190 ORTHO05D003745 4.1e-17 92.0 60 71.7
FAN04G2686 Fragaria x ananassa HOM05D003190 ORTHO05D003745 4.1e-17 92.0 90 55.6
FAN08G1565 Fragaria x ananassa HOM05D003190 ORTHO05D003745 4.1e-17 92.0 60 71.7
vmacro13493 Vaccinium macrocarpon HOM05D003190 ORTHO05D003745 4.1e-17 92.0 60 71.7
FvH4_5g19860 Fragaria vesca HOM05D003190 ORTHO05D003745 5.4e-17 91.7 60 71.7
Gohir.A12G096900 Gossypium hirsutum HOM05D003190 ORTHO05D003745 5.4e-17 91.7 62 67.7
Manes.05G054500 Manihot esculenta HOM05D003190 ORTHO05D003745 7.1e-17 91.3 62 66.1
Actinidia02786 Actinidia chinensis HOM05D003190 ORTHO05D003745 1.6e-16 90.1 60 70.0
FAN13G1610 Fragaria x ananassa HOM05D003190 ORTHO05D003745 2.1e-16 89.7 90 54.4
Lj1g0027839 Lotus japonicus HOM05D003190 ORTHO05D003745 2.1e-16 89.7 84 57.1
Thecc.01G394400 Theobroma cacao HOM05D003190 ORTHO05D003745 2.1e-16 89.7 62 66.1
vmacro21057 Vaccinium macrocarpon HOM05D003190 ORTHO05D003745 2.1e-16 89.7 102 51.0
Dinv44067 Davidia involucrata HOM05D003190 ORTHO05D003745 2.7e-16 89.4 82 56.1
Duzib133G1461 Durio zibethinus HOM05D003190 ORTHO05D003745 2.7e-16 89.4 62 66.1
FAN18G2349 Fragaria x ananassa HOM05D003190 ORTHO05D003745 2.7e-16 89.4 90 54.4
MD02G1211700 Malus domestica HOM05D003190 ORTHO05D003745 2.7e-16 89.4 60 66.7
Hund17090 Selenicereus undatus HOM05D003190 ORTHO05D003745 2.7e-16 89.4 92 52.2
Actinidia12147 Actinidia chinensis HOM05D003190 ORTHO05D003745 3.5e-16 89.0 60 68.3
Actinidia12646 Actinidia chinensis HOM05D003190 ORTHO05D003745 3.5e-16 89.0 60 70.0
Ciclev10021825m.g Citrus clementina HOM05D003190 ORTHO05D003745 3.5e-16 89.0 62 64.5
QL04p030379 Quercus lobata HOM05D003190 ORTHO05D003745 4.6e-16 88.6 60 66.7
FvH4_7g10110 Fragaria vesca HOM05D003190 ORTHO05D003745 6.0e-16 88.2 67 62.7
Potri.002G137400 Populus trichocarpa HOM05D003190 ORTHO05D003745 6.0e-16 88.2 67 61.2
QL12p009727 Quercus lobata HOM05D003190 ORTHO05D003745 6.0e-16 88.2 60 70.0
CiPaw.13G026700 Carya illinoinensis HOM05D003190 ORTHO05D003745 7.8e-16 87.8 60 65.0
RcHm_v2.0_Chr1g0347681 Rosa chinensis HOM05D003190 ORTHO05D003745 7.8e-16 87.8 60 65.0
Aqoxy3G02735 Aquilegia oxysepala HOM05D003190 ORTHO05D003745 1.0e-15 87.4 84 54.8
Ciclev10021722m.g Citrus clementina HOM05D003190 ORTHO05D003745 1.0e-15 87.4 60 68.3
Prupe.5G061700 Prunus persica HOM05D003190 ORTHO05D003745 1.0e-15 87.4 60 70.0
AT1G02090 Arabidopsis thaliana HOM05D003190 ORTHO05D003745 1.3e-15 87.0 62 67.7
CARHR248010 Cardamine hirsuta HOM05D003190 ORTHO05D003745 1.3e-15 87.0 94 48.9
Cfa011075 Carpinus fangiana HOM05D003190 ORTHO05D003745 1.3e-15 87.0 60 65.0
Haze_02841 Corylus avellana HOM05D003190 ORTHO05D003745 1.3e-15 87.0 60 65.0
Duzib138G0899 Durio zibethinus HOM05D003190 ORTHO05D003745 1.3e-15 87.0 67 58.2
Sed0021185 Sechium edule HOM05D003190 ORTHO05D003745 1.3e-15 87.0 60 70.0
GSVIVG01004797001 Vitis vinifera HOM05D003190 ORTHO05D003745 1.3e-15 87.0 59 66.1
CSS0020681 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D003745 1.7e-15 86.7 96 49.0
Carub.0001s0013 Capsella rubella HOM05D003190 ORTHO05D003745 1.7e-15 86.7 62 66.1
Glyma.13G187200 Glycine max HOM05D003190 ORTHO05D003745 1.7e-15 86.7 60 66.7
Hma1.2p1_0674F.1_g201530 Hydrangea macrophylla HOM05D003190 ORTHO05D003745 1.7e-15 86.7 103 48.5
MELO3C022274.2 Cucumis melo HOM05D003190 ORTHO05D003745 2.3e-15 86.3 60 68.3
CsaV3_6G008580 Cucumis sativus L. HOM05D003190 ORTHO05D003745 2.3e-15 86.3 60 68.3
Thhalv10026057m.g Eutrema salsugineum HOM05D003190 ORTHO05D003745 2.3e-15 86.3 92 51.1
Gohir.D11G080200 Gossypium hirsutum HOM05D003190 ORTHO05D003745 2.3e-15 86.3 62 62.9
Gorai.007G085900 Gossypium raimondii HOM05D003190 ORTHO05D003745 2.3e-15 86.3 62 62.9
Manes.01G272900 Manihot esculenta HOM05D003190 ORTHO05D003745 2.3e-15 86.3 62 64.5
RcHm_v2.0_Chr7g0204651 Rosa chinensis HOM05D003190 ORTHO05D003745 2.3e-15 86.3 92 53.3
Sp1g00180 Schrenkiella parvula HOM05D003190 ORTHO05D003745 2.3e-15 86.3 62 64.5
AL1G10140 Arabidopsis lyrata HOM05D003190 ORTHO05D003745 3.0e-15 85.9 92 50.0
BcaC06g34922 Brassica carinata HOM05D003190 ORTHO05D003745 3.0e-15 85.9 90 51.1
ClCG06G002540 Citrullus lanatus HOM05D003190 ORTHO05D003745 3.0e-15 85.9 60 68.3
ECA236G0031 Erigeron canadensis HOM05D003190 ORTHO05D003745 3.0e-15 85.9 60 65.0
Eucgr.D01237 Eucalyptus grandis HOM05D003190 ORTHO05D003745 3.0e-15 85.9 82 53.7
Eucgr.L01589 Eucalyptus grandis HOM05D003190 ORTHO05D003745 3.0e-15 85.9 82 53.7
Oeu020085.3 Olea europaea HOM05D003190 ORTHO05D003745 3.0e-15 85.9 60 65.0
MD04G1057800 Malus domestica HOM05D003190 ORTHO05D003745 3.9e-15 85.5 60 68.3
MD07G1106500 Malus domestica HOM05D003190 ORTHO05D003745 3.9e-15 85.5 57 66.7
A07p14830 Brassica napus HOM05D003190 ORTHO05D003745 5.1e-15 85.1 90 48.9
BraA07t29224Z Brassica rapa HOM05D003190 ORTHO05D003745 5.1e-15 85.1 90 48.9
Gohir.A11G075600 Gossypium hirsutum HOM05D003190 ORTHO05D003745 5.1e-15 85.1 62 61.3
SalBow5G0141 Salvia bowleyana HOM05D003190 ORTHO05D003745 5.1e-15 85.1 60 63.3
VMungo1127G1897 Vigna mungo HOM05D003190 ORTHO05D003745 5.1e-15 85.1 60 65.0
DCAR_029466 Daucus carota HOM05D003190 ORTHO05D003745 6.6e-15 84.7 60 65.0
Gohir.D08G040200 Gossypium hirsutum HOM05D003190 ORTHO05D003745 6.6e-15 84.7 62 61.3
Gorai.004G039100 Gossypium raimondii HOM05D003190 ORTHO05D003745 6.6e-15 84.7 62 61.3
MD07G1107100 Malus domestica HOM05D003190 ORTHO05D003745 6.6e-15 84.7 60 63.3
Phvul.011G190600 Phaseolus vulgaris HOM05D003190 ORTHO05D003745 6.6e-15 84.7 60 65.0
Thhalv10008523m.g Eutrema salsugineum HOM05D003190 ORTHO05D003745 8.6e-15 84.3 61 62.3
Lj7C545T16 Lonicera japonica HOM05D003190 ORTHO05D003745 8.6e-15 84.3 107 44.9
TWI59G1064 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 8.6e-15 84.3 62 62.9
TAR375G0928 Trochodendron aralioides HOM05D003190 ORTHO05D003745 8.6e-15 84.3 67 58.2
BcaB03g14242 Brassica carinata HOM05D003190 ORTHO05D003745 1.1e-14 84.0 60 63.3
C07p21780 Brassica napus HOM05D003190 ORTHO05D003745 1.1e-14 84.0 91 51.6
CSS0044756 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D003745 1.1e-14 84.0 82 53.7
Cc02_g25080 Coffea canephora HOM05D003190 ORTHO05D003745 1.1e-14 84.0 59 67.8
Glyma.18G252100 Glycine max HOM05D003190 ORTHO05D003745 1.1e-14 84.0 84 52.4
HanXRQChr13g0414471 Helianthus annuus HOM05D003190 ORTHO05D003745 1.1e-14 84.0 92 48.9
Nn1g00857 Nelumbo nucifera HOM05D003190 ORTHO05D003745 1.1e-14 84.0 84 51.2
Potri.014G047200 Populus trichocarpa HOM05D003190 ORTHO05D003745 1.1e-14 84.0 67 58.2
Sabra14G0034200 Salix brachista HOM05D003190 ORTHO05D003745 1.1e-14 84.0 67 58.2
GSVIVG01018273001 Vitis vinifera HOM05D003190 ORTHO05D003745 1.1e-14 84.0 107 45.8
EL10Ac1g00758 Beta vulgaris HOM05D003190 ORTHO05D003745 1.5e-14 83.6 62 64.5
CiPaw.14G020800 Carya illinoinensis HOM05D003190 ORTHO05D003745 1.5e-14 83.6 60 65.0
Migut.B01538 Erythranthe guttata HOM05D003190 ORTHO05D003745 1.5e-14 83.6 82 50.0
Gohir.A08G029500 Gossypium hirsutum HOM05D003190 ORTHO05D003745 1.5e-14 83.6 62 59.7
Oeu000052.1 Olea europaea HOM05D003190 ORTHO05D003745 1.5e-14 83.6 82 52.4
Peaxi162Scf00103g00518 Petunia axillaris HOM05D003190 ORTHO05D003745 1.5e-14 83.6 60 63.3
Sabra15G0154700 Salix brachista HOM05D001888 ORTHO05D001842 1.5e-14 83.6 67 68.7
Sc02g0003110 Simmondsia chinensis HOM05D003190 ORTHO05D003745 1.5e-14 83.6 62 66.1
CARHR000240 Cardamine hirsuta HOM05D003190 ORTHO05D003745 1.9e-14 83.2 91 50.5
Glyma.15G224900 Glycine max HOM05D003190 ORTHO05D003745 1.9e-14 83.2 60 65.0
Nn6g33831 Nelumbo nucifera HOM05D003190 ORTHO05D003745 1.9e-14 83.2 85 48.2
THA.LOC104801488 Tarenaya hassleriana HOM05D003190 ORTHO05D003745 1.9e-14 83.2 92 50.0
arahy.Tifrunner.gnm1.ann1.9AB492 Arachis hypogaea HOM05D003190 ORTHO05D003745 2.5e-14 82.8 89 50.6
arahy.Tifrunner.gnm1.ann1.WK7TVH Arachis hypogaea HOM05D003190 ORTHO05D003745 2.5e-14 82.8 89 50.6
HanXRQChr06g0167931 Helianthus annuus HOM05D003190 ORTHO05D003745 2.5e-14 82.8 82 52.4
Lalb_Chr19g0126531 Lupinus albus HOM05D003190 ORTHO05D003745 2.5e-14 82.8 82 50.0
Nitab4.5_0012667g0010 Nicotiana tabacum HOM05D003190 ORTHO05D003745 2.5e-14 82.8 60 63.3
THA.LOC104814067 Tarenaya hassleriana HOM05D003190 ORTHO05D003745 2.5e-14 82.8 62 61.3
BolC7t42709H Brassica oleracea HOM05D003190 ORTHO05D003745 3.3e-14 82.4 91 50.5
CAN.G1473.15 Capsicum annuum HOM05D003190 ORTHO05D003745 3.3e-14 82.4 60 61.7
ECA234G0556 Erigeron canadensis HOM05D003190 ORTHO05D003745 3.3e-14 82.4 60 60.0
HanXRQChr02g0046721 Helianthus annuus HOM05D003190 ORTHO05D003745 3.3e-14 82.4 82 50.0
Ca_08071_v3 Cicer arietinum L. HOM05D003190 ORTHO05D003745 4.3e-14 82.0 60 65.0
Lsat_1_v5_gn_4_39820 Lactuca sativa HOM05D003190 ORTHO05D003745 4.3e-14 82.0 60 61.7
AagrBONN_evm.TU.Sc2ySwM_228.489 Anthoceros agrestis HOM05D003190 ORTHO05D003745 5.6e-14 81.6 60 63.3
Lalb_Chr03g0040361 Lupinus albus HOM05D003190 ORTHO05D003745 5.6e-14 81.6 60 60.0
MBI04_g07222_MAGBIO Magnolia biondii HOM05D003190 ORTHO05D003745 5.6e-14 81.6 60 61.7
Nitab4.5_0004620g0020 Nicotiana tabacum HOM05D003190 ORTHO05D003745 5.6e-14 81.6 82 51.2
SMO239G0056 Selaginella moellendorffii HOM05D003190 ORTHO05D003745 5.6e-14 81.6 60 65.0
MSTRG.17130 Avicennia marina HOM05D003190 ORTHO05D003745 7.3e-14 81.3 60 60.0
BcaC07g42436 Brassica carinata HOM05D003190 ORTHO05D003745 7.3e-14 81.3 92 47.8
A09p69340 Brassica napus HOM05D003190 ORTHO05D003745 7.3e-14 81.3 92 47.8
BolC8t52924H Brassica oleracea HOM05D003190 ORTHO05D003745 7.3e-14 81.3 92 47.8
AUR62013747 Chenopodium quinoa HOM05D003190 ORTHO05D003745 7.3e-14 81.3 96 47.9
PSO782G2887 Papaver somniferum HOM05D003190 ORTHO05D003745 7.3e-14 81.3 96 44.8
Peaxi162Scf00475g00516 Petunia axillaris HOM05D003190 ORTHO05D003745 7.3e-14 81.3 82 50.0
TPR.G14100 Trifolium pratense HOM05D003190 ORTHO05D003745 7.3e-14 81.3 60 61.7
Cpa.g.sc101.14 Carica papaya HOM05D003190 ORTHO05D003745 9.5e-14 80.9 107 43.0
AUR62023404 Chenopodium quinoa HOM05D003190 ORTHO05D003745 9.5e-14 80.9 96 47.9
Prupe.2G129800 Prunus persica HOM05D003190 ORTHO05D003745 9.5e-14 80.9 60 61.7
SHI13612 Sapria himalayana HOM05D003190 ORTHO05D003745 9.5e-14 80.9 62 61.3
TWI14G0166 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 9.5e-14 80.9 104 45.2
Medtr7g081735 Medicago truncatula HOM05D003190 ORTHO05D003745 1.2e-13 80.5 60 63.3
PSO063G4643 Papaver somniferum HOM05D003190 ORTHO05D003745 1.2e-13 80.5 96 44.8
Pp3c15_22100 Physcomitrium patens HOM05D003190 ORTHO05D003745 1.2e-13 80.5 82 52.4
Pp3c9_18560 Physcomitrium patens HOM05D003190 ORTHO05D003745 1.2e-13 80.5 82 52.4
TAR374G0382 Trochodendron aralioides HOM05D003190 ORTHO05D003745 1.2e-13 80.5 84 50.0
BcaC07g42340 Brassica carinata HOM05D003190 ORTHO05D003745 1.6e-13 80.1 95 47.4
BraA09t42279Z Brassica rapa HOM05D003190 ORTHO05D003745 1.6e-13 80.1 95 47.4
Carub.0006s3723 Capsella rubella HOM05D003190 ORTHO05D003745 1.6e-13 80.1 64 60.9
Hund27406 Selenicereus undatus HOM05D003190 ORTHO05D003745 1.6e-13 80.1 62 61.3
Lj9A558T43 Lonicera japonica HOM05D003190 ORTHO05D003745 2.1e-13 79.7 108 42.6
Sp6g00030 Schrenkiella parvula HOM05D003190 ORTHO05D003745 2.1e-13 79.7 62 58.1
SGA_v2.0_scaffold153G36905 Striga asiatica HOM05D003190 ORTHO05D003745 2.1e-13 79.7 82 48.8
SGA_v2.0_scaffold43G16535 Striga asiatica HOM05D003190 ORTHO05D003745 2.1e-13 79.7 84 51.2
PGSC0003DMG400026050 Solanum tuberosum HOM05D003190 ORTHO05D003745 2.8e-13 79.3 60 61.7
SEGI_01663 Sequoiadendron giganteum HOM05D003190 ORTHO05D003745 3.6e-13 79.0 60 63.3
ATR0057G124 Amborella trichopoda HOM05D003190 ORTHO05D003745 6.2e-13 78.2 89 48.3
MSTRG.20693 Avicennia marina HOM05D003190 ORTHO05D003745 6.2e-13 78.2 82 48.8
Psat3g098680 Pisum sativum HOM05D003190 ORTHO05D003745 6.2e-13 78.2 60 61.7
CDE04G2650 Ceratophyllum demersum HOM05D003190 ORTHO05D003745 8.1e-13 77.8 97 45.4
CDE12G0792 Ceratophyllum demersum HOM05D003190 ORTHO05D003745 8.1e-13 77.8 97 45.4
Migut.N01739 Erythranthe guttata HOM05D003190 ORTHO05D003745 8.1e-13 77.8 60 56.7
PGR042G3195 Punica granatum HOM05D003190 ORTHO05D003745 8.1e-13 77.8 82 50.0
CANSAT21G0456 Cannabis sativa HOM05D003190 ORTHO05D003745 1.4e-12 77.0 60 60.0
CANSAT21G1264 Cannabis sativa HOM05D003190 ORTHO05D003745 1.4e-12 77.0 60 60.0
CBR_g6296 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-12 76.6 60 63.3
Mapoly0041s0006 Marchantia polymorpha HOM05D003190 ORTHO05D003745 1.8e-12 76.6 60 63.3
Oeu063237.1 Olea europaea HOM05D003190 ORTHO05D003745 1.8e-12 76.6 82 50.0
SGA_v2.0_scaffold52G19224 Striga asiatica HOM05D003190 ORTHO05D003745 1.8e-12 76.6 82 47.6
Zm00001eb105310 Zea mays HOM05D003190 ORTHO05D003745 1.8e-12 76.6 60 61.7
HPP92_001540 Vanilla planifolia HOM05D000263 ORTHO05D000213 2.3e-12 76.3 82 47.6
Aa31LG1G11460 Aethionema arabicum HOM05D003190 ORTHO05D003745 4.0e-12 75.5 62 58.1
Zm00001eb321750 Zea mays HOM05D003190 ORTHO05D003745 4.0e-12 75.5 60 60.0
Solyc01g090290.4 Solanum lycopersicum HOM05D003190 ORTHO05D003745 5.2e-12 75.1 60 60.0
Sopen01g036080 Solanum pennellii HOM05D003190 ORTHO05D003745 2.6e-11 72.8 60 58.3
FAN03G0648 Fragaria x ananassa HOM05D003190 ORTHO05D003745 3.4e-11 72.4 48 66.7
FAN10G1008 Fragaria x ananassa HOM05D003190 ORTHO05D003745 3.4e-11 72.4 48 66.7
TWI23G0403 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 4.4e-11 72.0 81 49.4
FAN01G1555 Fragaria x ananassa HOM05D003190 ORTHO05D003745 7.6e-11 71.2 48 64.6
FAN06G0700 Fragaria x ananassa HOM05D003190 ORTHO05D003745 4.9e-10 68.6 48 64.6
Cre16.g651500 Chlamydomonas reinhardtii HOM05D003190 ORTHO05D003745 2.4e-09 66.2 60 55.0
BcaB03g13632 Brassica carinata HOM05D003190 ORTHO05D003745 5.4e-09 65.1 62 51.6
Sabra03G0051000 Salix brachista HOM05D003190 ORTHO05D018834 5.1e-07 58.5 34 88.2


User provided reference genes

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