Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 1.9e-212 742.3 374 100.0
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 1.0e-194 683.3 373 92.2
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 7.5e-137 491.1 379 69.1
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 2.2e-136 489.6 335 75.5
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 3.7e-136 488.8 376 69.4
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 3.1e-135 485.7 386 68.4
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 4.5e-134 481.9 375 69.1
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 1.0e-133 480.7 386 67.6
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 5.0e-133 478.4 359 70.2
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.5e-132 476.9 337 73.9
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 3.3e-132 475.7 367 69.5
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 5.5e-132 474.9 300 79.3
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.2e-131 473.8 361 69.8
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 1.6e-131 473.4 352 72.2
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 2.1e-131 473.0 381 67.5
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 2.8e-131 472.6 373 68.6
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 4.7e-131 471.9 350 71.4
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 6.1e-131 471.5 351 70.7
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 8.0e-131 471.1 378 68.0
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.0e-130 470.7 359 69.1
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 1.4e-130 470.3 360 68.3
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 1.2e-129 467.2 355 67.3
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 1.5e-129 466.8 369 67.5
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 2.6e-129 466.1 377 65.8
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 2.6e-129 466.1 376 65.2
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 4.4e-129 465.3 359 68.5
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 4.4e-129 465.3 382 66.0
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 1.3e-128 463.8 371 67.1
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 2.2e-128 463.0 300 76.3
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 6.3e-128 461.5 351 69.8
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 1.1e-127 460.7 332 70.8
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 1.4e-127 460.3 386 66.1
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 4.1e-127 458.8 373 64.9
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 5.4e-127 458.4 379 64.9
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 7.0e-127 458.0 309 75.1
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 7.0e-127 458.0 351 68.1
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 7.0e-127 458.0 329 71.4
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 9.2e-127 457.6 381 64.0
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 9.2e-127 457.6 380 64.2
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 9.2e-127 457.6 356 67.1
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 1.6e-126 456.8 337 68.8
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-126 456.4 382 63.9
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 2.0e-126 456.4 294 77.9
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 2.0e-126 456.4 334 69.8
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 2.7e-126 456.1 376 63.8
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 2.7e-126 456.1 376 63.8
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 2.7e-126 456.1 350 67.7
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 4.5e-126 455.3 382 64.4
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 4.5e-126 455.3 371 66.6
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 5.9e-126 454.9 338 69.5
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 1.0e-125 454.1 312 73.4
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 1.0e-125 454.1 377 64.2
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 2.9e-125 452.6 305 75.7
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 3.8e-125 452.2 304 74.0
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 6.6e-125 451.4 312 73.4
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 6.6e-125 451.4 364 63.5
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 8.6e-125 451.1 392 61.7
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.5e-124 450.3 337 68.5
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 3.3e-124 449.1 375 65.1
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 3.3e-124 449.1 360 65.8
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.3e-124 448.7 392 61.5
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 1.2e-123 447.2 375 63.7
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 1.6e-123 446.8 379 62.8
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.8e-123 446.0 305 73.8
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 2.8e-123 446.0 327 68.2
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.7e-123 445.3 383 63.7
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 4.0e-122 442.2 308 70.1
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 8.9e-122 441.0 377 61.5
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.2e-121 440.7 303 72.3
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 1.5e-121 440.3 373 63.3
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.5e-121 440.3 399 60.2
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 1.5e-121 440.3 332 68.1
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 4.4e-121 438.7 375 61.6
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 4.4e-121 438.7 340 67.1
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 1.3e-120 437.2 300 71.0
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 1.7e-120 436.8 323 69.0
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 3.7e-120 435.6 383 63.2
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 1.1e-119 434.1 305 73.1
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 2.4e-119 433.0 303 70.3
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 3.5e-118 429.1 340 66.8
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 1.3e-117 427.2 380 61.1
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 3.0e-117 426.0 354 63.8
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 5.0e-117 425.2 374 61.0
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 6.6e-117 424.9 350 64.0
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 8.6e-117 424.5 441 54.4
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 8.6e-117 424.5 300 68.3
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 4.3e-116 422.2 337 65.9
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 2.0e-113 413.3 303 66.0
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 6.6e-109 398.3 334 64.1
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 5.2e-106 388.7 352 59.7
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 5.2e-106 388.7 255 74.9
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 5.2e-106 388.7 303 65.0
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 4.9e-104 382.1 293 66.2
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 4.9e-104 382.1 293 66.2
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 7.8e-102 374.8 314 63.7
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 1.2e-99 367.5 308 62.0
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 4.2e-95 352.4 284 61.6
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 3.5e-94 349.4 368 50.8
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 2.1e-91 340.1 266 66.9
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 8.1e-91 338.2 303 54.8
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 3.1e-90 336.3 295 59.7
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 9.0e-90 334.7 304 52.0
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 1.5e-89 334.0 304 53.6
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-89 333.6 304 53.9
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 2.6e-89 333.2 303 54.1
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 1.3e-88 330.9 294 54.1
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.9e-88 329.7 342 48.8
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.4e-87 327.4 310 53.5
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 1.2e-86 324.3 295 53.6
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 2.7e-86 323.2 304 51.3
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 6.0e-86 322.0 304 51.0
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.7e-85 320.5 303 54.1
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.3e-85 320.1 302 52.3
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 3.0e-85 319.7 286 60.8
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 3.9e-85 319.3 304 50.7
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.6e-85 318.5 303 53.5
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.1e-84 317.8 304 52.3
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.1e-84 317.8 304 51.3
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 3.3e-84 316.2 307 56.4
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 4.3e-84 315.8 293 52.2
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.6e-84 315.5 304 50.3
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 5.6e-84 315.5 304 52.3
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 5.6e-84 315.5 304 52.3
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 9.6e-84 314.7 303 52.8
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 2.1e-83 313.5 276 55.4
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.8e-83 313.2 293 52.6
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 1.8e-82 310.5 303 51.5
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 5.3e-82 308.9 304 51.6
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.0e-81 307.0 303 50.8
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 4.5e-81 305.8 308 50.3
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 7.6e-81 305.1 304 50.3
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 9.9e-81 304.7 218 67.4
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 1.7e-80 303.9 309 51.5
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.7e-80 303.9 314 49.0
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 2.9e-80 303.1 309 51.1
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 6.4e-80 302.0 294 51.4
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 8.4e-80 301.6 307 50.5
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-78 297.7 304 49.0
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 1.2e-78 297.7 303 47.5
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 6.0e-78 295.4 297 50.2
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 2.3e-77 293.5 281 50.9
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.9e-74 282.0 282 48.9
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 2.1e-70 270.4 307 48.2
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 2.7e-70 270.0 352 41.2
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 1.3e-69 267.7 293 48.5
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 2.1e-67 260.4 286 49.0
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 5.3e-66 255.8 247 51.0
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 2.2e-64 250.4 245 59.2
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 1.1e-63 248.1 287 49.8
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 5.0e-56 222.6 293 42.3
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 8.8e-53 211.8 202 52.5
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 8.8e-53 211.8 202 52.5
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.5e-52 210.3 222 48.6
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 2.5e-52 210.3 326 38.0
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 4.5e-49 199.5 212 57.1
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 1.1e-47 194.9 259 46.7
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 2.7e-38 163.7 128 55.5
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 2.0e-36 157.5 128 53.9
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-36 157.5 128 53.9
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-36 157.5 153 51.6
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.5e-33 146.4 303 31.0
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.3e-32 144.8 82 86.6
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 3.0e-29 133.7 111 51.4
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 1.8e-26 124.4 161 46.0
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 8.5e-24 115.5 302 30.1
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 3.2e-23 113.6 94 62.8
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 2.3e-13 80.9 61 65.6


User provided reference genes

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