Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 1.8e-37 158.7 76 100.0
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 5.6e-23 110.5 73 74.0
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 1.1e-21 106.3 73 72.6
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 5.2e-21 104.0 77 61.0
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 1.2e-20 102.8 77 63.6
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 1.2e-20 102.8 77 63.6
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 1.5e-20 102.4 76 64.5
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 1.5e-20 102.4 77 62.3
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 2.6e-20 101.7 76 63.2
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 7.5e-20 100.1 78 60.3
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 7.5e-20 100.1 78 60.3
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 9.9e-20 99.8 76 64.5
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 1.3e-19 99.4 74 64.9
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 1.3e-19 99.4 76 64.5
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 4.9e-19 97.4 76 61.8
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 6.4e-19 97.1 75 64.0
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 1.4e-18 95.9 73 65.8
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.4e-18 95.9 78 57.7
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 1.9e-18 95.5 73 65.8
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 1.9e-18 95.5 76 63.2
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 3.2e-18 94.7 76 63.2
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 4.1e-18 94.4 74 59.5
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 5.4e-18 94.0 76 60.5
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 7.1e-18 93.6 76 60.5
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 9.2e-18 93.2 76 57.9
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 9.2e-18 93.2 74 58.1
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 9.2e-18 93.2 74 60.8
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.2e-17 92.8 76 59.2
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 1.6e-17 92.4 74 56.8
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 2.1e-17 92.0 75 56.0
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 2.1e-17 92.0 76 59.2
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 4.6e-17 90.9 73 56.2
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 4.6e-17 90.9 73 56.2
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 4.6e-17 90.9 73 56.2
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 4.6e-17 90.9 73 56.2
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 4.6e-17 90.9 73 56.2
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 4.6e-17 90.9 76 57.9
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 6.0e-17 90.5 74 58.1
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 7.8e-17 90.1 73 56.2
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.0e-16 89.7 74 56.8
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 1.3e-16 89.4 73 53.4
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.3e-16 89.4 73 56.2
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 1.3e-16 89.4 77 53.2
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 1.3e-16 89.4 75 57.3
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 1.7e-16 89.0 72 55.6
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 1.7e-16 89.0 76 53.9
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 1.7e-16 89.0 76 53.9
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 1.7e-16 89.0 76 53.9
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 2.3e-16 88.6 73 53.4
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 2.3e-16 88.6 73 54.8
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 2.3e-16 88.6 78 55.1
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 3.0e-16 88.2 77 55.8
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 3.0e-16 88.2 74 56.8
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 3.9e-16 87.8 76 52.6
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 5.1e-16 87.4 74 54.1
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 6.6e-16 87.0 74 56.8
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 6.6e-16 87.0 75 53.3
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 6.6e-16 87.0 73 54.8
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 8.6e-16 86.7 76 53.9
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 8.6e-16 86.7 74 54.1
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 8.6e-16 86.7 74 54.1
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 1.1e-15 86.3 73 53.4
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 1.1e-15 86.3 76 52.6
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 1.1e-15 86.3 77 57.1
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 1.5e-15 85.9 76 52.6
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 1.5e-15 85.9 73 52.1
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 1.5e-15 85.9 76 50.0
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 1.9e-15 85.5 76 50.0
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 2.5e-15 85.1 74 55.4
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 2.5e-15 85.1 77 49.4
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 2.5e-15 85.1 76 55.3
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 2.5e-15 85.1 76 51.3
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 2.5e-15 85.1 76 50.0
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 7.3e-15 83.6 66 56.1
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 2.1e-14 82.0 76 53.9
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 2.1e-14 82.0 77 53.2
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 4.7e-14 80.9 77 51.9
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 6.2e-14 80.5 77 50.6
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 8.1e-14 80.1 76 50.0
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 8.1e-14 80.1 76 55.3
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 1.4e-13 79.3 75 53.3
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 1.8e-13 79.0 77 50.6
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 1.8e-13 79.0 77 46.8
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 1.8e-13 79.0 72 48.6
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 1.8e-13 79.0 77 53.2
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 2.4e-13 78.6 77 49.4
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 2.4e-13 78.6 77 51.9
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 3.1e-13 78.2 76 52.6
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 3.1e-13 78.2 70 50.0
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 5.2e-13 77.4 77 53.2
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.5e-12 75.9 76 44.7
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.5e-12 75.9 76 51.3
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 2.6e-12 75.1 78 50.0
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.4e-12 74.7 76 48.7
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.4e-12 74.7 76 48.7
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 3.4e-12 74.7 78 50.0
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 4.4e-12 74.3 71 50.7
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 2.9e-11 71.6 72 47.2
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.8e-11 71.2 76 47.4
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 3.8e-11 71.2 67 47.8
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 1.9e-10 68.9 54 59.3
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 4.1e-10 67.8 48 64.6
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 4.1e-10 67.8 80 48.8
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 4.1e-10 67.8 80 48.8
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 4.1e-10 67.8 80 48.8
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 7.1e-10 67.0 76 44.7
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 9.2e-10 66.6 56 57.1
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 3.5e-09 64.7 68 45.6
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 1.7e-08 62.4 74 45.9
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 3.0e-08 61.6 41 58.5
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 5.1e-08 60.8 66 42.4
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 1.1e-07 59.7 57 50.9
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 4.3e-07 57.8 57 45.6
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 5.6e-07 57.4 62 40.3
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 3.6e-06 54.7 45 51.1


User provided reference genes

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