Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 0.0e+00 1544.6 824 100.0
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 7.6e-275 950.7 767 74.3
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 7.9e-256 887.5 803 68.5
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 1.3e-250 870.2 876 63.0
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 9.9e-174 614.8 817 51.5
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 9.2e-172 608.2 815 52.0
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 1.6e-163 580.9 836 50.7
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 1.1e-153 548.1 842 49.6
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 7.4e-153 545.4 847 48.1
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 4.0e-151 539.7 825 48.8
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.2e-148 530.0 789 48.2
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.3e-146 524.6 835 48.0
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 5.1e-146 522.7 836 46.7
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-145 521.2 789 48.2
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.6e-142 510.4 844 46.9
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 1.0e-141 508.4 844 45.6
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 3.8e-141 506.5 842 46.3
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 5.7e-137 492.7 833 47.3
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 9.7e-137 491.9 827 44.5
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 8.2e-136 488.8 840 45.4
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.8e-135 487.6 797 46.4
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 1.5e-134 484.6 814 44.8
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 1.7e-133 481.1 811 43.8
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 2.2e-133 480.7 811 45.3
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.9e-133 480.3 797 45.5
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.6e-131 473.0 774 45.7
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 2.0e-129 467.6 830 43.7
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 2.5e-129 467.2 885 42.8
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 5.7e-129 466.1 815 43.4
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 7.4e-129 465.7 822 43.4
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 2.8e-128 463.8 816 43.9
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 2.0e-126 457.6 776 45.9
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.9e-126 456.1 780 45.1
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 1.7e-125 454.5 795 44.9
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 6.5e-125 452.6 824 43.6
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 4.2e-124 449.9 854 44.4
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 7.2e-124 449.1 811 42.2
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.1e-123 447.6 780 45.3
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.8e-122 444.5 950 40.6
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 5.1e-122 443.0 844 43.1
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 2.8e-120 437.2 855 42.9
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 4.1e-119 433.3 842 42.6
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 7.0e-119 432.6 819 42.6
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.2e-118 431.8 776 42.8
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 2.0e-118 431.0 851 41.7
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.6e-118 430.6 842 42.4
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-117 427.6 784 43.1
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 8.5e-117 425.6 810 43.0
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 3.2e-116 423.7 856 42.2
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 4.2e-116 423.3 683 47.7
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.1e-115 421.0 496 57.3
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 3.0e-114 417.2 791 43.0
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 6.7e-114 416.0 812 41.5
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 5.7e-113 412.9 792 42.9
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 7.4e-113 412.5 823 42.5
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 3.1e-111 407.1 816 40.8
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 3.5e-110 403.7 872 41.7
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 7.7e-110 402.5 819 41.8
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.1e-108 398.7 825 41.7
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 1.1e-108 398.7 846 40.8
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 4.2e-108 396.7 849 41.9
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 3.6e-107 393.7 830 40.6
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 4.7e-107 393.3 828 40.8
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 1.4e-106 391.7 806 42.4
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 3.4e-105 387.1 847 40.3
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.1e-103 382.1 808 40.3
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 4.1e-103 380.2 790 41.1
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 2.0e-102 377.9 817 40.9
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 2.9e-101 374.0 459 55.6
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 1.1e-100 372.1 864 39.2
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 1.1e-100 372.1 853 40.8
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 4.2e-100 370.2 897 37.5
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 5.5e-100 369.8 840 38.5
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.1e-99 367.9 853 40.6
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 3.6e-99 367.1 873 38.0
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 4.0e-98 363.6 808 40.2
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 1.2e-97 362.1 806 38.6
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 2.6e-97 360.9 825 40.6
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 2.6e-97 360.9 832 38.7
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 1.7e-96 358.2 832 38.9
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 9.1e-95 352.4 825 39.8
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.0e-94 351.3 527 49.0
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 4.5e-94 350.1 798 39.7
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 7.7e-94 349.4 771 39.7
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 6.6e-93 346.3 811 40.1
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 5.5e-92 343.2 794 40.1
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 2.1e-91 341.3 820 39.1
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 6.1e-91 339.7 831 37.2
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 2.3e-90 337.8 396 54.5
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 4.9e-88 330.1 837 37.0
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 7.0e-87 326.2 793 38.5
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 1.6e-86 325.1 692 40.0
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 1.6e-86 325.1 722 42.7
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 2.7e-86 324.3 857 36.2
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 1.7e-85 321.6 862 36.7
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 5.0e-85 320.1 774 36.2
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 1.9e-84 318.2 760 38.6
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 2.1e-83 314.7 781 38.2
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 2.8e-83 314.3 577 40.7
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 2.8e-83 314.3 807 36.3
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 1.4e-82 312.0 814 36.7
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 1.8e-82 311.6 792 36.0
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 4.0e-82 310.5 809 37.1
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 1.5e-81 308.5 780 36.2
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 1.9e-79 301.6 795 38.1
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 1.9e-76 291.6 772 36.0
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 2.3e-74 284.6 758 36.4
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 2.0e-73 281.6 785 34.8
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 2.6e-73 281.2 590 37.8
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 5.8e-73 280.0 778 35.9
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 3.7e-72 277.3 475 43.2
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 4.9e-72 276.9 792 34.5
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 7.1e-71 273.1 777 33.1
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 6.0e-70 270.0 772 34.2
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 1.3e-69 268.9 794 35.6
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 1.7e-69 268.5 768 34.1
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 1.5e-68 265.4 768 34.2
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 7.3e-68 263.1 313 55.3
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.4e-66 258.8 821 34.0
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 3.1e-66 257.7 496 40.9
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 5.2e-66 256.9 790 33.9
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 4.4e-65 253.8 499 40.9
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 5.8e-65 253.4 517 41.8
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 6.4e-64 250.0 793 34.0
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 4.1e-63 247.3 797 32.0
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 3.3e-60 237.7 705 35.9
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 1.2e-59 235.7 801 34.6
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 3.1e-58 231.1 786 33.8
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 4.0e-58 230.7 684 34.4
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.5e-57 228.8 668 36.4
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 3.4e-57 227.6 761 32.5
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 1.1e-55 222.6 824 32.2
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 1.7e-53 215.3 519 36.4
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 9.0e-50 203.0 612 35.0
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 2.9e-48 198.0 546 33.7
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 6.6e-45 186.8 683 34.1
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 8.4e-40 169.9 426 34.7
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 3.2e-39 167.9 368 38.3
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 9.3e-39 166.4 453 34.7
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 1.3e-35 156.0 179 55.3
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.8e-32 144.4 269 45.0
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 5.5e-31 140.6 433 32.3
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 6.0e-30 137.1 591 31.1
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.0e-29 136.3 430 31.9
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 4.3e-28 131.0 167 49.1
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 5.7e-28 130.6 112 67.9
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 1.3e-24 119.4 407 30.5
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 2.1e-22 112.1 139 48.9
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 8.7e-21 106.7 101 60.4
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 1.3e-19 102.8 379 30.6
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.1e-18 99.8 501 29.7
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.1e-18 98.2 80 72.5
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 5.3e-18 97.4 203 39.4
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-16 92.8 78 69.2
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 4.2e-15 87.8 413 29.3
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 7.2e-15 87.0 425 28.7
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 3.3e-12 78.2 80 57.5
Gorai.004G113400 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.3e-11 76.3 57 73.7
Gohir.D04G051401 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-11 75.5 57 75.4
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.3e-11 73.9 49 81.6
Gohir.A02G090400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.2e-11 73.6 66 65.2
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-10 72.8 87 54.0
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.8e-10 72.4 49 79.6
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.4e-10 72.0 89 52.8
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.1e-10 71.6 87 54.0
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.1e-10 71.6 100 48.0
Gohir.D12G066350 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.9e-10 70.5 57 70.2
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 4.5e-09 67.8 78 53.8
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.9e-09 67.4 82 54.9
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 7.7e-09 67.0 76 52.6
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.8e-08 64.7 78 51.3
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.0e-08 64.3 77 51.9
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.5e-08 63.9 77 51.9
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 8.5e-08 63.5 181 32.0
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-07 62.8 78 51.3


User provided reference genes

Program Settings