Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 0.0e+00 1191.0 683 100.0
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 5.9e-148 528.9 680 47.2
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 1.8e-72 278.1 313 49.5
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 6.9e-72 276.2 309 49.5
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 1.5e-71 275.0 324 46.0
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 2.9e-70 270.8 227 56.4
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 1.4e-69 268.5 319 45.1
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 2.3e-67 261.2 332 43.4
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 3.9e-67 260.4 189 63.5
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 5.1e-67 260.0 332 43.4
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.6e-65 255.0 223 54.3
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 3.7e-65 253.8 223 53.4
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 6.3e-65 253.1 320 45.3
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.8e-64 251.5 223 52.9
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.4e-64 251.1 223 52.9
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.5e-63 248.4 332 42.2
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 1.5e-63 248.4 218 54.1
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 3.4e-63 247.3 181 64.1
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 5.9e-63 246.5 364 41.2
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 1.0e-62 245.7 314 49.4
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 6.5e-62 243.0 219 53.4
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 6.5e-62 243.0 310 42.9
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 1.4e-61 241.9 218 53.2
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 9.4e-61 239.2 220 51.4
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 6.1e-60 236.5 318 41.5
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 7.9e-60 236.1 210 53.3
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 1.0e-59 235.7 224 52.7
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 1.0e-59 235.7 225 49.8
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 1.8e-59 235.0 205 53.7
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 1.8e-59 235.0 216 52.3
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 1.5e-58 231.9 202 51.0
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 4.3e-58 230.3 191 54.5
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 7.4e-58 229.6 199 54.3
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 7.4e-58 229.6 296 43.2
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 3.7e-57 227.3 227 48.5
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 8.2e-57 226.1 195 56.9
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 3.1e-56 224.2 198 50.0
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 3.1e-56 224.2 225 49.8
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 4.1e-56 223.8 194 52.6
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 1.5e-55 221.9 326 39.9
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 3.4e-55 220.7 216 49.5
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 4.5e-55 220.3 190 53.2
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 5.9e-55 219.9 226 48.7
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 7.7e-55 219.5 219 48.4
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 1.7e-54 218.4 228 50.9
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 1.7e-54 218.4 198 50.0
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 3.8e-54 217.2 227 49.3
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 5.0e-54 216.9 227 49.3
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 1.1e-53 215.7 173 53.2
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 1.4e-53 215.3 189 50.8
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 1.4e-53 215.3 226 48.7
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 2.5e-53 214.5 219 46.1
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 3.2e-53 214.2 231 49.4
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 5.5e-53 213.4 231 49.8
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 1.2e-52 212.2 190 49.5
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 2.7e-52 211.1 193 52.3
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 1.0e-51 209.1 315 39.7
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 1.4e-51 208.8 226 46.9
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 1.1e-50 205.7 327 37.0
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 1.5e-50 205.3 195 49.7
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 2.0e-50 204.9 686 27.8
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 2.0e-50 204.9 297 40.4
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 2.6e-50 204.5 332 37.3
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 5.7e-50 203.4 205 47.3
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 1.7e-49 201.8 227 44.1
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 6.3e-49 199.9 230 47.0
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 8.2e-49 199.5 172 51.2
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.4e-48 198.7 208 47.6
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 4.1e-48 197.2 194 51.0
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 2.6e-47 194.5 198 46.5
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 2.6e-47 194.5 203 46.3
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 3.5e-47 194.1 191 44.5
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 3.5e-47 194.1 199 47.2
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 3.5e-47 194.1 192 46.9
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 4.5e-47 193.7 188 47.3
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 7.7e-47 193.0 258 45.0
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 7.7e-47 193.0 197 46.2
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 1.7e-46 191.8 258 41.1
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 3.8e-46 190.7 229 41.0
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 3.8e-46 190.7 170 50.0
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 6.5e-46 189.9 306 36.6
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.1e-45 189.1 194 47.4
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.4e-45 188.7 190 46.3
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 2.5e-45 188.0 194 45.4
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 3.2e-45 187.6 192 48.4
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 5.5e-45 186.8 193 47.2
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 7.2e-45 186.4 168 51.2
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 2.1e-44 184.9 298 34.2
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 4.7e-44 183.7 163 52.1
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 4.7e-44 183.7 194 47.4
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.4e-43 182.2 293 36.5
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 1.8e-43 181.8 189 43.4
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 3.9e-43 180.6 196 48.0
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.9e-43 180.6 701 28.1
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 5.2e-43 180.3 175 50.3
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 8.8e-43 179.5 189 43.4
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 8.8e-43 179.5 230 38.7
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.5e-42 178.7 189 46.0
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 7.4e-42 176.4 174 46.0
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 9.7e-42 176.0 196 44.9
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 1.3e-41 175.6 194 43.3
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 2.2e-41 174.9 224 38.8
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 2.2e-41 174.9 198 46.0
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 3.7e-41 174.1 200 45.5
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 3.7e-41 174.1 175 48.6
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 3.7e-41 174.1 213 44.1
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 3.7e-41 174.1 226 41.2
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 6.3e-41 173.3 153 54.2
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 6.3e-41 173.3 194 43.8
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 1.4e-40 172.2 236 38.1
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 7.0e-40 169.9 215 42.8
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 1.2e-39 169.1 202 39.1
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 4.5e-39 167.2 222 42.8
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 4.5e-39 167.2 222 42.8
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 1.3e-38 165.6 174 44.3
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 1.3e-38 165.6 174 44.3
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 1.7e-38 165.2 216 42.6
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 2.9e-38 164.5 174 44.3
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 6.5e-38 163.3 196 43.4
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 6.5e-38 163.3 174 44.3
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 1.1e-37 162.5 227 38.8
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 1.5e-37 162.2 219 40.2
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 3.2e-37 161.0 174 44.8
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 4.7e-36 157.1 174 43.1
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 6.1e-36 156.8 190 41.6
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 6.1e-36 156.8 195 41.0
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 6.1e-36 156.8 120 55.8
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 9.7e-34 149.4 170 47.6
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 8.3e-33 146.4 185 43.2
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 2.7e-31 141.4 267 37.5
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 1.7e-30 138.7 136 44.9
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 1.1e-29 136.0 195 40.0
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 1.5e-29 135.6 173 38.7
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.5e-29 135.6 342 32.5
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 7.2e-29 133.3 159 38.4
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 9.4e-29 132.9 188 36.2
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 1.2e-28 132.5 159 38.4
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 1.2e-28 132.5 159 38.4
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.8e-27 128.6 125 47.2
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 5.7e-26 123.6 150 43.3
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 7.5e-26 123.2 150 40.0
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.7e-25 120.9 106 50.0
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.1e-24 119.4 99 50.5
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 5.4e-24 117.1 101 47.5
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 4.5e-23 114.0 143 38.5
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 4.5e-23 114.0 114 44.7
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 1.3e-22 112.5 180 36.1
Ciclev10007055m.g Citrus clementina HOM05D003860 ORTHO05D004218 3.8e-22 110.9 170 43.5
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 8.6e-22 109.8 174 33.9
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 1.5e-21 109.0 159 35.2
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 3.6e-20 104.4 114 43.0
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 8.9e-19 99.8 140 37.9
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.5e-18 99.0 162 37.7
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 1.3e-17 95.9 118 40.7
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 5.4e-16 90.5 127 37.8
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 1.1e-13 82.8 51 68.6
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.9e-13 82.0 61 55.7
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 2.8e-12 78.2 62 56.5
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 3.6e-12 77.8 130 30.0
Cpa.g.sc126.45 Carica papaya HOM05D003860 ORTHO05D004218 3.1e-11 74.7 97 45.4
FvH4_3g26751 Fragaria vesca HOM05D003860 ORTHO05D004218 5.2e-11 73.9 63 54.0
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 3.4e-10 71.2 126 33.3
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 6.4e-09 67.0 38 73.7
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 7.0e-08 63.5 144 28.5
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 7.0e-08 63.5 144 28.5
HPP92_016088 Vanilla planifolia HOM05D003860 ORTHO05D004218 2.7e-07 61.6 65 46.2
Manes.15G061700 Manihot esculenta HOM05D001580 ORTHO05D001517 3.5e-07 61.2 167 27.5
SHI00611 Sapria himalayana HOM05D003860 ORTHO05D004218 7.8e-07 60.1 40 65.0
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 1.7e-06 58.9 155 37.4
MSTRG.6990 Avicennia marina HOM05D001580 ORTHO05D001517 3.0e-06 58.2 178 27.0
SalBow5G5209 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.9e-06 57.8 32 71.9
Ca_10185_v3 Cicer arietinum L. HOM05D000621 ORTHO05D000421 5.0e-06 57.4 171 24.6
Potri.001G365800 Populus trichocarpa HOM05D001580 ORTHO05D001517 5.0e-06 57.4 165 29.1
Sabra16G0239400 Salix brachista HOM05D001580 ORTHO05D001517 8.6e-06 56.6 165 29.1
SalBow6G0760 Salvia bowleyana HOM05D003860 ORTHO05D004218 8.6e-06 56.6 50 46.0


User provided reference genes

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