Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0121300 Salix brachista HOM05D008144 ORTHO05D010081 0.0e+00 1564.3 818 100.0
Potri.008G159200 Populus trichocarpa HOM05D008144 ORTHO05D010081 0.0e+00 1234.9 821 81.2
Potri.010G081000 Populus trichocarpa HOM05D008144 ORTHO05D010081 2.2e-274 949.1 819 65.6
Manes.03G171900 Manihot esculenta HOM05D008144 ORTHO05D010081 2.6e-110 404.1 1132 33.2
Prupe.1G023500 Prunus persica HOM05D008144 ORTHO05D010081 1.3e-109 401.7 821 39.2
QL06p000574 Quercus lobata HOM05D008144 ORTHO05D010081 1.0e-101 375.6 882 35.9
MD13G1201700 Malus domestica HOM05D008144 ORTHO05D010081 2.0e-89 334.7 821 36.7
CiPaw.01G194000 Carya illinoinensis HOM05D008144 ORTHO05D010081 5.9e-86 323.2 883 35.8
Thecc.04G241000 Theobroma cacao HOM05D008144 ORTHO05D010081 8.5e-85 319.3 810 34.7
Dinv14059 Davidia involucrata HOM05D008144 ORTHO05D010081 7.5e-81 306.2 827 34.2
Haze_11249 Corylus avellana HOM05D008144 ORTHO05D010081 1.2e-78 298.9 951 32.8
Duzib151G0265 Durio zibethinus HOM05D008144 ORTHO05D010081 4.4e-73 280.4 833 32.5
Duzib212G0503 Durio zibethinus HOM05D008144 ORTHO05D010081 6.3e-72 276.6 836 32.9
CSS0041819 Camellia sinensis var. sinensis HOM05D008144 ORTHO05D010081 2.4e-63 248.1 806 31.6
TWI73G1171 Tripterygium wilfordii HOM05D008144 ORTHO05D010081 5.0e-61 240.4 862 29.4
FAN17G0986 Fragaria x ananassa HOM05D008144 ORTHO05D010081 3.6e-59 234.2 796 31.5
FAN17G1249 Fragaria x ananassa HOM05D008144 ORTHO05D010081 3.6e-59 234.2 796 31.5
Dinv44593 Davidia involucrata HOM05D008144 ORTHO05D010081 3.1e-58 231.1 792 31.1
FvH4_4g01740 Fragaria vesca HOM05D008144 ORTHO05D010081 9.8e-57 226.1 798 31.2
TAR362G0851 Trochodendron aralioides HOM05D008144 ORTHO05D010081 1.3e-56 225.7 908 28.2
RcHm_v2.0_Chr4g0388601 Rosa chinensis HOM05D008144 ORTHO05D010081 3.7e-56 224.2 726 32.6
Ciclev10004664m.g Citrus clementina HOM05D008144 ORTHO05D010081 1.9e-55 221.9 574 33.6
GSVIVG01018069001 Vitis vinifera HOM05D008144 ORTHO05D010081 3.0e-53 214.5 781 29.2
FAN12G1940 Fragaria x ananassa HOM05D008144 ORTHO05D010081 5.0e-53 213.8 798 31.0
FAN22G0807 Fragaria x ananassa HOM05D008144 ORTHO05D010081 5.6e-52 210.3 814 30.6
CANSAT78G0891 Cannabis sativa HOM05D008144 ORTHO05D010081 2.9e-48 198.0 962 28.0
Atru.chr4.2325 Acer truncatum HOM05D008144 ORTHO05D010081 8.3e-48 196.4 385 39.2
Gorai.005G045900 Gossypium raimondii HOM05D008144 ORTHO05D010081 3.9e-45 187.6 827 29.9
Gohir.D02G041500 Gossypium hirsutum HOM05D008144 ORTHO05D010081 1.6e-43 182.2 827 30.0
MD16G1202000 Malus domestica HOM05D008144 ORTHO05D010081 4.1e-39 167.5 275 43.6
Gohir.A02G034700 Gossypium hirsutum HOM05D008144 ORTHO05D010081 6.0e-38 163.7 837 28.6
Glyma.02G002200 Glycine max HOM05D008144 ORTHO05D010081 1.9e-31 142.1 818 27.8
COL.COLO4_13184 Corchorus olitorius HOM05D008144 ORTHO05D010081 1.6e-30 139.0 870 26.1
VMungo0720G0769 Vigna mungo HOM05D008144 ORTHO05D010081 1.0e-29 136.3 726 26.6
Dinv33607 Davidia involucrata HOM05D008144 ORTHO05D010081 1.1e-28 132.9 128 55.5
Eucgr.H03407 Eucalyptus grandis HOM05D008144 ORTHO05D010081 3.3e-28 131.3 560 27.7
Medtr1g041300 Medicago truncatula HOM05D008144 ORTHO05D010081 8.1e-27 126.7 533 28.5
Phvul.007G278800 Phaseolus vulgaris HOM05D008144 ORTHO05D010081 1.4e-26 125.9 788 27.4
Psat6g103240 Pisum sativum HOM05D008144 ORTHO05D010081 1.4e-26 125.9 191 42.4
PGSC0003DMG400006073 Solanum tuberosum HOM05D014400 ORTHO05D010081 5.3e-26 124.0 806 26.2
Sabra10G0062200 Salix brachista HOM05D008144 ORTHO05D010081 2.0e-25 122.1 163 47.9
Cpa.g.sc44.134 Carica papaya HOM05D008144 ORTHO05D010081 2.6e-25 121.7 376 32.7
Lj6g0001132 Lotus japonicus HOM05D008144 ORTHO05D010081 3.4e-25 121.3 696 27.6
ClCG05G004780 Citrullus lanatus HOM05D025894 ORTHO05D010081 4.4e-25 120.9 487 27.7
Sopen09g031740 Solanum pennellii HOM05D014400 ORTHO05D010081 1.3e-24 119.4 803 25.5
Solyc09g082900.3 Solanum lycopersicum HOM05D014400 ORTHO05D010081 1.7e-24 119.0 793 26.0
DCAR_002363 Daucus carota HOM05D008144 ORTHO05D010081 2.2e-24 118.6 481 28.1
TPR.G32783 Trifolium pratense HOM05D008144 ORTHO05D010081 4.2e-23 114.4 836 25.1
CsaV3_3G012810 Cucumis sativus L. HOM05D025894 ORTHO05D010081 2.3e-21 108.6 188 37.8
Oeu009118.1 Olea europaea HOM05D008144 ORTHO05D010081 3.0e-21 108.2 158 44.3
Nitab4.5_0000224g0080 Nicotiana tabacum HOM05D014400 ORTHO05D010081 5.1e-21 107.5 799 25.3
Nitab4.5_0002118g0020 Nicotiana tabacum HOM05D014400 ORTHO05D010081 8.7e-21 106.7 473 29.0
TAR633G0610 Trochodendron aralioides HOM05D008144 ORTHO05D010081 5.6e-20 104.0 234 33.8
Peaxi162Scf00758g00019 Petunia axillaris HOM05D014400 ORTHO05D010081 7.3e-20 103.6 553 27.3
Dinv14057 Davidia involucrata HOM05D008144 ORTHO05D010081 6.2e-19 100.5 281 34.5
Lalb_Chr03g0037551 Lupinus albus HOM05D008144 ORTHO05D010081 1.4e-18 99.4 851 25.1
Sed0006870 Sechium edule HOM05D025894 ORTHO05D010081 4.0e-18 97.8 541 25.7
Aqoxy2G03478 Aquilegia oxysepala HOM05D008144 ORTHO05D031257 9.0e-18 96.7 827 23.5
PGR004G2389 Punica granatum HOM05D008144 ORTHO05D010081 1.5e-17 95.9 843 26.1
MELO3C006492.2 Cucumis melo HOM05D025894 ORTHO05D010081 4.5e-17 94.4 530 25.3
Nn1g02499 Nelumbo nucifera HOM05D008144 ORTHO05D010081 4.9e-16 90.9 263 31.2
SalBow3G2772 Salvia bowleyana HOM05D014400 ORTHO05D010081 8.4e-16 90.1 156 39.1
Rhsim04G0196200 Rhododendron simsii HOM05D008144 ORTHO05D010081 2.1e-14 85.5 353 29.2
Migut.N00217 Erythranthe guttata HOM05D014400 ORTHO05D010081 1.6e-11 75.9 156 36.5
Actinidia04502 Actinidia chinensis HOM05D008144 ORTHO05D010081 1.8e-10 72.4 853 23.7
THA.LOC104809081 Tarenaya hassleriana HOM05D011210 ORTHO05D013204 5.3e-10 70.9 170 32.4
Actinidia14081 Actinidia chinensis HOM05D008144 ORTHO05D010081 1.5e-09 69.3 85 50.6
MBI11_g00116_MAGBIO Magnolia biondii HOM05D008144 ORTHO05D010081 2.0e-09 68.9 215 28.4
SGA_v2.0_scaffold308G48120 Striga asiatica HOM05D014400 ORTHO05D010081 4.5e-09 67.8 160 35.0
AL7G41440 Arabidopsis lyrata HOM05D011210 ORTHO05D013204 1.7e-08 65.9 181 34.8
SEGI_34568 Sequoiadendron giganteum HOM05D008144 ORTHO05D010081 4.9e-08 64.3 121 36.4
vmacro08386 Vaccinium macrocarpon HOM05D008144 ORTHO05D010081 4.9e-08 64.3 835 23.2
Sp7g12760 Schrenkiella parvula HOM05D011210 ORTHO05D013204 1.4e-07 62.8 326 26.1
ATR0665G611 Amborella trichopoda HOM05D008144 ORTHO05D067239 1.9e-07 62.4 221 24.4
Hund20652 Selenicereus undatus HOM05D008144 ORTHO05D010081 3.2e-07 61.6 88 45.5
MD16G1201900 Malus domestica HOM05D008144 ORTHO05D010081 9.3e-07 60.1 77 51.9
AT4G14650 Arabidopsis thaliana HOM05D011210 ORTHO05D013204 2.7e-06 58.5 152 33.6
BolC8t48228H Brassica oleracea HOM05D011210 ORTHO05D013204 6.0e-06 57.4 163 31.3
C01p28640 Brassica napus HOM05D011210 ORTHO05D013204 7.9e-06 57.0 214 30.8


User provided reference genes

Program Settings