Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 1.5e-178 629.4 312 100.0
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 1.3e-94 350.5 564 42.9
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 1.6e-92 343.6 548 43.1
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.6e-79 300.4 548 39.1
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 2.1e-76 290.0 467 42.6
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.3e-70 270.8 548 37.8
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 3.9e-70 269.2 561 36.9
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.5e-69 266.5 521 38.2
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 2.1e-68 263.5 550 36.7
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.8e-68 263.1 556 36.2
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 4.7e-68 262.3 550 36.4
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 1.0e-67 261.2 544 37.1
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 1.0e-67 261.2 550 36.5
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.4e-67 260.8 549 35.9
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 1.4e-67 260.8 505 38.2
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 1.8e-67 260.4 545 37.4
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 4.0e-67 259.2 550 36.2
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 8.9e-67 258.1 505 37.6
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.0e-66 256.9 549 36.6
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 9.8e-66 254.6 549 36.8
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.7e-65 253.8 550 37.1
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.2e-65 253.4 544 36.4
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 2.2e-65 253.4 546 36.3
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 2.9e-65 253.1 548 36.3
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 4.9e-65 252.3 547 36.7
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.9e-65 252.3 542 36.2
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 8.3e-65 251.5 542 36.3
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 1.1e-64 251.1 547 35.8
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.1e-64 251.1 549 35.5
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 1.9e-64 250.4 505 37.4
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 4.1e-64 249.2 547 35.5
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 4.1e-64 249.2 550 36.4
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 4.1e-64 249.2 553 35.4
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 5.4e-64 248.8 547 36.2
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 9.2e-64 248.1 540 35.9
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.2e-64 248.1 549 35.2
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 9.2e-64 248.1 549 36.1
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 1.2e-63 247.7 548 35.6
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 6.0e-63 245.4 547 35.1
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 7.8e-63 245.0 551 34.8
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 1.0e-62 244.6 546 35.2
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 1.7e-62 243.8 548 34.3
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 2.3e-62 243.4 550 34.5
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 2.3e-62 243.4 548 34.3
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 3.0e-62 243.0 548 34.3
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 3.0e-62 243.0 549 34.8
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 6.6e-62 241.9 469 38.0
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 6.6e-62 241.9 548 34.7
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 2.5e-61 240.0 551 33.9
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 5.6e-61 238.8 548 33.9
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 7.3e-61 238.4 547 34.4
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 7.3e-61 238.4 545 34.9
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 9.5e-61 238.0 510 36.3
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 1.6e-60 237.3 554 34.8
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 3.6e-60 236.1 580 33.8
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 3.6e-60 236.1 549 35.3
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 4.7e-60 235.7 547 35.1
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 6.2e-60 235.3 545 34.1
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 8.1e-60 235.0 545 33.9
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.4e-59 234.2 575 33.7
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.4e-59 234.2 506 35.4
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.8e-59 233.8 511 35.2
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.8e-59 233.8 548 33.0
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.8e-59 233.8 550 34.2
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 1.8e-59 233.8 544 34.2
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 1.8e-59 233.8 551 34.1
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.8e-59 233.8 551 35.2
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 2.3e-59 233.4 547 33.8
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 2.3e-59 233.4 547 33.8
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 6.8e-59 231.9 544 33.8
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.8e-59 231.9 536 34.9
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 6.8e-59 231.9 559 34.2
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 1.2e-58 231.1 559 33.3
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.2e-58 231.1 530 35.5
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 1.5e-58 230.7 587 33.4
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 1.5e-58 230.7 547 34.6
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 4.4e-58 229.2 551 33.6
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 7.5e-58 228.4 547 34.4
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 9.8e-58 228.0 544 34.0
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.7e-57 227.3 424 39.4
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 1.7e-57 227.3 546 33.9
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 1.7e-57 227.3 550 34.0
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 2.2e-57 226.9 545 34.1
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 2.2e-57 226.9 547 34.6
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 6.4e-57 225.3 547 33.6
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 1.1e-56 224.6 551 34.8
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.1e-56 224.6 543 33.3
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 1.4e-56 224.2 547 34.0
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.4e-56 224.2 547 34.2
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.9e-56 223.8 560 32.9
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 1.9e-56 223.8 549 33.3
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.4e-56 223.4 548 32.8
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.2e-56 223.0 507 35.5
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 4.1e-56 222.6 552 33.0
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 4.1e-56 222.6 543 33.1
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 5.4e-56 222.2 551 34.1
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.2e-55 221.1 537 33.7
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.6e-55 220.7 533 34.7
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 2.7e-55 219.9 549 32.8
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 3.5e-55 219.5 547 33.6
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 3.5e-55 219.5 547 33.5
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 7.8e-55 218.4 553 33.5
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 1.3e-54 217.6 536 33.8
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 2.3e-54 216.9 536 33.6
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 3.0e-54 216.5 547 33.3
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 6.6e-54 215.3 546 32.6
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 1.1e-53 214.5 547 33.8
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 1.5e-53 214.2 549 35.5
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 3.3e-53 213.0 499 34.5
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 4.3e-53 212.6 543 33.0
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 5.6e-53 212.2 551 33.2
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 9.5e-53 211.5 563 32.3
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 2.1e-52 210.3 540 32.6
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 4.7e-52 209.1 564 32.4
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 8.1e-52 208.4 546 32.6
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 1.1e-51 208.0 546 32.2
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.8e-51 207.2 549 32.1
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 3.1e-51 206.5 509 34.4
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.7e-49 200.7 558 32.1
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 2.9e-49 199.9 530 32.6
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 9.2e-48 194.9 518 32.6
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 8.1e-44 181.8 220 49.1
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.0e-42 177.2 557 31.1
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 7.6e-42 175.3 574 30.5
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.1e-40 171.4 502 31.9
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.9e-40 170.6 240 46.2
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.1e-37 161.4 241 44.0
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 1.9e-37 160.6 543 26.9
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 2.8e-36 156.8 245 44.1
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 9.9e-34 148.3 247 41.3
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 9.9e-34 148.3 521 28.8
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 1.3e-30 137.9 252 36.9
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 5.6e-29 132.5 201 45.3
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.8e-27 127.5 99 63.6
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 5.3e-27 125.9 154 48.7
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 5.5e-24 115.9 87 57.5
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 5.1e-22 109.4 356 33.1
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 4.8e-20 102.8 88 52.3
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 6.9e-19 99.0 106 51.9
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 5.8e-18 95.9 115 50.4
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 2.9e-17 93.6 223 34.1
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 1.1e-16 91.7 77 64.9
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 9.3e-16 88.6 83 60.2
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 2.3e-14 84.0 107 51.4
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 4.3e-13 79.7 60 66.7
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 4.3e-13 79.7 76 52.6
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 9.7e-13 78.6 46 71.7
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 2.0e-10 70.9 94 46.8
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 2.0e-10 70.9 46 65.2
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.6e-10 70.5 52 55.8
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.6e-10 70.5 52 55.8
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 1.3e-09 68.2 80 51.2


User provided reference genes

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