Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 1.0e-104 383.6 233 100.0
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 2.4e-93 345.9 234 89.7
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 2.9e-86 322.4 236 79.2
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 1.6e-84 316.6 232 77.6
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 1.4e-80 303.5 235 75.7
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 1.8e-80 303.1 239 75.7
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 2.3e-80 302.8 238 73.9
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 1.7e-75 286.6 247 68.8
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 2.1e-73 279.6 241 70.5
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 2.8e-73 279.3 247 68.8
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 2.8e-73 279.3 239 69.9
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 4.0e-72 275.4 238 70.2
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 8.9e-72 274.2 236 69.5
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 3.4e-71 272.3 240 69.2
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 2.9e-70 269.2 253 66.8
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 2.9e-70 269.2 243 71.2
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 6.4e-70 268.1 242 66.9
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 8.4e-70 267.7 244 68.0
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 3.2e-69 265.8 241 66.0
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 3.2e-69 265.8 241 66.0
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 4.2e-69 265.4 241 66.4
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 5.4e-69 265.0 239 65.7
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 7.1e-69 264.6 243 68.7
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 2.1e-68 263.1 240 66.7
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 3.5e-68 262.3 243 66.7
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 7.8e-68 261.2 246 68.3
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 3.0e-67 259.2 251 64.5
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.9e-66 256.5 216 73.1
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 4.3e-66 255.4 237 67.1
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 4.3e-66 255.4 270 61.5
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 5.6e-66 255.0 239 64.4
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 1.2e-63 247.3 243 64.6
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 2.6e-63 246.1 245 62.0
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 4.5e-63 245.4 240 61.7
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 3.8e-62 242.3 239 61.9
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.1e-61 240.7 233 63.1
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 2.4e-61 239.6 239 60.3
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 3.2e-61 239.2 258 59.7
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 1.2e-60 237.3 253 63.6
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 2.1e-60 236.5 253 64.0
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 3.5e-60 235.7 262 61.5
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 3.5e-60 235.7 239 61.1
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 1.3e-59 233.8 258 58.5
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 2.3e-59 233.0 254 60.6
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.9e-58 229.9 244 59.8
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 4.3e-58 228.8 251 60.6
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 7.4e-58 228.0 241 61.4
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 1.6e-57 226.9 254 59.4
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 3.7e-57 225.7 246 59.3
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 4.8e-57 225.3 231 62.8
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 4.8e-57 225.3 246 59.8
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 8.1e-57 224.6 236 58.1
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 8.1e-57 224.6 260 58.8
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 1.8e-56 223.4 239 62.3
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 4.0e-56 222.2 234 62.4
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 1.5e-55 220.3 165 77.6
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 3.4e-55 219.2 251 62.5
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 5.8e-55 218.4 285 59.6
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 5.8e-55 218.4 238 60.1
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 9.9e-55 217.6 252 64.3
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 4.9e-54 215.3 252 63.9
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 8.4e-54 214.5 266 53.8
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 8.4e-54 214.5 244 57.4
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 8.4e-54 214.5 238 57.6
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.1e-53 214.2 239 53.1
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 1.4e-53 213.8 244 56.6
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.4e-53 213.8 244 57.4
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 1.9e-53 213.4 245 58.4
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 2.4e-53 213.0 239 57.7
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 3.2e-53 212.6 242 57.9
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 4.2e-53 212.2 226 62.4
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.2e-52 210.7 258 54.3
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 2.1e-52 209.9 233 65.2
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 6.7e-51 204.9 239 55.2
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 1.1e-50 204.1 240 55.0
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 2.5e-50 203.0 240 57.5
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 4.8e-49 198.7 238 52.5
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 3.1e-48 196.1 196 63.8
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 4.0e-48 195.7 243 52.3
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.3e-46 190.7 234 57.7
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 2.9e-46 189.5 283 50.9
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 1.4e-45 187.2 228 54.4
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 7.1e-45 184.9 283 47.7
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 1.6e-44 183.7 242 50.4
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 2.1e-44 183.3 169 62.1
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 4.6e-44 182.2 230 57.0
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 3.0e-43 179.5 239 52.7
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 3.0e-43 179.5 230 51.3
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 5.1e-43 178.7 243 51.4
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 1.5e-42 177.2 244 54.1
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 1.9e-42 176.8 244 49.2
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 4.3e-42 175.6 228 55.7
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 1.6e-41 173.7 222 52.7
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 4.8e-41 172.2 230 49.1
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 6.3e-41 171.8 232 53.0
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 1.1e-40 171.0 234 51.7
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 1.4e-40 170.6 223 50.7
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 5.3e-40 168.7 233 52.4
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 6.9e-40 168.3 238 49.6
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.2e-39 167.5 233 52.4
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 1.5e-39 167.2 223 50.7
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 2.6e-39 166.4 231 53.2
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 7.6e-39 164.9 227 49.8
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 7.6e-39 164.9 207 57.0
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 1.0e-38 164.5 243 50.6
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 1.3e-38 164.1 233 45.1
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 1.7e-38 163.7 227 52.0
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 1.7e-38 163.7 227 52.0
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 2.5e-37 159.8 251 49.8
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 7.2e-37 158.3 239 51.5
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 1.2e-36 157.5 239 47.7
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 1.2e-36 157.5 171 57.9
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 2.1e-36 156.8 239 50.2
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 4.6e-36 155.6 278 43.2
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 7.9e-36 154.8 229 52.4
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 2.3e-35 153.3 264 46.6
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 2.3e-35 153.3 247 49.0
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 6.7e-35 151.8 230 45.7
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 1.5e-34 150.6 254 48.0
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 5.7e-34 148.7 247 53.8
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 9.7e-34 147.9 195 53.3
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 3.7e-33 146.0 270 44.8
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 3.7e-33 146.0 268 45.1
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 3.7e-33 146.0 270 44.8
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 3.7e-33 146.0 197 52.3
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 3.7e-33 146.0 268 45.1
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 2.4e-32 143.3 277 46.2
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 1.0e-30 137.9 175 54.9
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 1.0e-30 137.9 145 52.4
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 3.8e-30 136.0 249 46.2
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.1e-29 134.4 253 46.2
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.1e-29 134.4 271 44.3
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 1.3e-25 120.9 261 42.5
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 2.4e-24 116.7 236 39.0
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 4.1e-24 115.9 151 47.7
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 9.1e-24 114.8 235 36.6
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 1.2e-23 114.4 161 44.1
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.9e-21 107.1 154 44.8
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 5.7e-18 95.5 111 49.5
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.3e-17 94.4 91 57.1
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 7.0e-16 88.6 75 77.3
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.0e-14 84.7 149 39.6
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 3.3e-10 69.7 127 37.8
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 2.4e-08 63.5 278 23.7
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 5.3e-08 62.4 43 69.8
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 2.7e-07 60.1 135 35.6
Manes.12G102900 Manihot esculenta HOM05D002458 ORTHO05D002603 2.7e-07 60.1 132 33.3
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 3.5e-07 59.7 132 32.6
MBI06_g24647_MAGBIO Magnolia biondii HOM05D002458 ORTHO05D002603 4.5e-07 59.3 146 32.9
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 4.5e-07 59.3 132 34.8
MSTRG.23756 Avicennia marina HOM05D002458 ORTHO05D002603 5.9e-07 58.9 132 34.8
Sopen02g015150 Solanum pennellii HOM05D002458 ORTHO05D002603 5.9e-07 58.9 132 34.8
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 5.9e-07 58.9 186 30.6
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 7.7e-07 58.5 143 32.9
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 7.7e-07 58.5 134 33.6
PGSC0003DMG400015780 Solanum tuberosum HOM05D002458 ORTHO05D002603 1.0e-06 58.2 154 33.8
Solyc02g065020.2 Solanum lycopersicum HOM05D002458 ORTHO05D002603 1.3e-06 57.8 132 34.8
PGSC0003DMG400025476 Solanum tuberosum HOM05D002458 ORTHO05D002603 1.7e-06 57.4 134 34.3
GSVIVG01022142001 Vitis vinifera HOM05D002458 ORTHO05D002603 1.7e-06 57.4 148 31.8
Duzib187G0864 Durio zibethinus HOM05D002458 ORTHO05D002603 3.8e-06 56.2 132 31.8
CSS0037574 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 5.0e-06 55.8 137 34.3
Duzib147G0558 Durio zibethinus HOM05D002458 ORTHO05D002603 5.0e-06 55.8 132 31.1
Manes.13G127400 Manihot esculenta HOM05D002458 ORTHO05D002603 5.0e-06 55.8 132 31.8
Peaxi162Scf00450g00733 Petunia axillaris HOM05D002458 ORTHO05D002603 6.5e-06 55.5 130 33.1
TAR376G0738 Trochodendron aralioides HOM05D002458 ORTHO05D002603 6.5e-06 55.5 132 31.8
Actinidia16500 Actinidia chinensis HOM05D002458 ORTHO05D002603 8.5e-06 55.1 138 34.1


User provided reference genes

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