Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0102600 Salix brachista HOM05D007313 ORTHO05D005299 6.3e-48 193.7 95 100.0
Potri.008G134100 Populus trichocarpa HOM05D007313 ORTHO05D005299 2.2e-32 142.1 76 89.5
Potri.010G107200 Populus trichocarpa HOM05D007313 ORTHO05D005299 7.0e-23 110.5 76 72.4
Sabra10G0078300 Salix brachista HOM05D007313 ORTHO05D005299 8.0e-19 97.1 72 69.4
Gohir.A01G147300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.2e-14 83.2 73 61.6
Gohir.D01G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.2e-14 83.2 73 61.6
Gorai.002G172500 Gossypium raimondii HOM05D007313 ORTHO05D005299 1.2e-14 83.2 73 61.6
COL.COLO4_16580 Corchorus olitorius HOM05D007313 ORTHO05D005299 1.6e-14 82.8 75 60.0
Duzib248G0390 Durio zibethinus HOM05D007313 ORTHO05D005299 2.0e-14 82.4 75 62.7
Thecc.02G291900 Theobroma cacao HOM05D007313 ORTHO05D005299 2.0e-14 82.4 75 61.3
Duzib268G0019 Durio zibethinus HOM05D007313 ORTHO05D005299 4.5e-14 81.3 73 61.6
Manes.15G133700 Manihot esculenta HOM05D007313 ORTHO05D005299 1.0e-13 80.1 76 60.5
Gohir.A03G114900 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.3e-13 79.7 56 71.4
Gohir.D02G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.3e-13 79.7 56 71.4
Gorai.005G156500 Gossypium raimondii HOM05D007313 ORTHO05D005299 1.3e-13 79.7 56 71.4
Cfa015015 Carpinus fangiana HOM05D007313 ORTHO05D005299 2.3e-13 79.0 68 60.3
Atru.chr11.945 Acer truncatum HOM05D007313 ORTHO05D005299 5.0e-13 77.8 60 68.3
Manes.17G083600 Manihot esculenta HOM05D007313 ORTHO05D005299 3.2e-12 75.1 67 58.2
Prupe.1G332700 Prunus persica HOM05D007313 ORTHO05D005299 5.5e-12 74.3 76 56.6
MD16G1019400 Malus domestica HOM05D007313 ORTHO05D005299 2.1e-11 72.4 68 54.4
QL03p035637 Quercus lobata HOM05D007313 ORTHO05D005299 8.0e-11 70.5 76 48.7
Dinv10480 Davidia involucrata HOM05D007313 ORTHO05D005299 3.0e-10 68.6 62 62.9
Carub.0001s2549 Capsella rubella HOM05D007313 ORTHO05D005299 5.2e-10 67.8 64 57.8
BcaC08g46215 Brassica carinata HOM05D007313 ORTHO05D005299 1.2e-09 66.6 57 61.4
BolC6t39221H Brassica oleracea HOM05D007313 ORTHO05D005299 1.2e-09 66.6 57 61.4
Ciclev10017248m.g Citrus clementina HOM05D007313 ORTHO05D005299 1.2e-09 66.6 67 55.2
THA.LOC104825566 Tarenaya hassleriana HOM05D007313 ORTHO05D005299 2.0e-09 65.9 73 50.7
CARHR026470 Cardamine hirsuta HOM05D007313 ORTHO05D005299 3.4e-09 65.1 70 52.9
Sp5g22920 Schrenkiella parvula HOM05D007313 ORTHO05D005299 7.5e-09 63.9 68 54.4
AL1G40310 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 9.8e-09 63.5 68 51.5
BcaB03g15385 Brassica carinata HOM05D007313 ORTHO05D005299 9.8e-09 63.5 76 52.6
Thhalv10019740m.g Eutrema salsugineum HOM05D007313 ORTHO05D005299 9.8e-09 63.5 52 63.5
BcaC03g14888 Brassica carinata HOM05D007313 ORTHO05D005299 1.3e-08 63.2 59 55.9
BcaC08g46017 Brassica carinata HOM05D007313 ORTHO05D005299 1.3e-08 63.2 76 50.0
A07p32280 Brassica napus HOM05D007313 ORTHO05D005299 1.3e-08 63.2 76 52.6
C02p23620 Brassica napus HOM05D007313 ORTHO05D005299 1.3e-08 63.2 59 55.9
C06p38120 Brassica napus HOM05D007313 ORTHO05D005299 1.3e-08 63.2 76 50.0
BolC2t08492H Brassica oleracea HOM05D007313 ORTHO05D005299 1.3e-08 63.2 59 55.9
BolC6t38909H Brassica oleracea HOM05D007313 ORTHO05D005299 1.3e-08 63.2 76 50.0
BraA07t30853Z Brassica rapa HOM05D007313 ORTHO05D005299 1.3e-08 63.2 76 52.6
Carub.0002s1441 Capsella rubella HOM05D007313 ORTHO05D005299 1.3e-08 63.2 68 54.4
ClCG01G006530 Citrullus lanatus HOM05D007313 ORTHO05D005299 1.3e-08 63.2 65 58.5
Aa31LG7G9440 Aethionema arabicum HOM05D007313 ORTHO05D005299 1.7e-08 62.8 64 53.1
BcaB05g24323 Brassica carinata HOM05D007313 ORTHO05D005299 1.7e-08 62.8 59 55.9
Cpa.g.sc2.206 Carica papaya HOM05D007313 ORTHO05D005299 1.7e-08 62.8 50 64.0
BcaB03g12049 Brassica carinata HOM05D007313 ORTHO05D005299 2.2e-08 62.4 71 50.7
CARHR060560 Cardamine hirsuta HOM05D007313 ORTHO05D005299 2.2e-08 62.4 51 64.7
A07p34460 Brassica napus HOM05D007313 ORTHO05D005299 2.8e-08 62.0 50 64.0
BraA07t31073Z Brassica rapa HOM05D007313 ORTHO05D005299 2.8e-08 62.0 50 64.0
Haze_10890 Corylus avellana HOM05D007313 ORTHO05D005299 2.8e-08 62.0 63 52.4
Lj4g0008951 Lotus japonicus HOM05D007313 ORTHO05D005299 2.8e-08 62.0 61 54.1
Sp1g23170 Schrenkiella parvula HOM05D007313 ORTHO05D005299 2.8e-08 62.0 70 50.0
AT1G67920 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 4.9e-08 61.2 68 54.4
BcaB03g15149 Brassica carinata HOM05D007313 ORTHO05D005299 4.9e-08 61.2 50 64.0
CiPaw.06G051300 Carya illinoinensis HOM05D007313 ORTHO05D005299 6.3e-08 60.8 69 55.1
Phvul.002G320600 Phaseolus vulgaris HOM05D007313 ORTHO05D005299 6.3e-08 60.8 55 58.2
A08p26710 Brassica napus HOM05D007313 ORTHO05D005299 8.3e-08 60.5 59 55.9
BraA08t34617Z Brassica rapa HOM05D007313 ORTHO05D005299 8.3e-08 60.5 59 55.9
CSS0045507 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 8.3e-08 60.5 67 53.7
AL2G26720 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 1.1e-07 60.1 68 52.9
Rhsim09G0090300 Rhododendron simsii HOM05D007313 ORTHO05D005299 1.1e-07 60.1 59 55.9
A02p14560 Brassica napus HOM05D007313 ORTHO05D005299 1.4e-07 59.7 70 54.3
BraA02t06526Z Brassica rapa HOM05D007313 ORTHO05D005299 1.4e-07 59.7 70 54.3
FAN07G0870 Fragaria x ananassa HOM05D007313 ORTHO05D005299 1.4e-07 59.7 59 54.2
FAN22G0875 Fragaria x ananassa HOM05D007313 ORTHO05D005299 1.4e-07 59.7 59 54.2
CANSAT01G0361 Cannabis sativa HOM05D007313 ORTHO05D005299 2.4e-07 58.9 56 53.6
RcHm_v2.0_Chr4g0443131 Rosa chinensis HOM05D007313 ORTHO05D005299 3.1e-07 58.5 64 50.0
AT1G24600 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 4.1e-07 58.2 51 58.8
Glyma.05G238200 Glycine max HOM05D007313 ORTHO05D005299 4.1e-07 58.2 53 56.6
TAR629G3106 Trochodendron aralioides HOM05D007313 ORTHO05D005299 4.1e-07 58.2 59 47.5
Glyma.08G045300 Glycine max HOM05D007313 ORTHO05D005299 5.4e-07 57.8 53 56.6
VMungo0540G1213 Vigna mungo HOM05D007313 ORTHO05D005299 5.4e-07 57.8 53 56.6
FvH4_4g33670 Fragaria vesca HOM05D007313 ORTHO05D005299 7.0e-07 57.4 59 52.5
FAN12G3843 Fragaria x ananassa HOM05D007313 ORTHO05D005299 7.0e-07 57.4 59 52.5
Sopen04g003130 Solanum pennellii HOM05D007313 ORTHO05D005299 7.0e-07 57.4 51 60.8
CSS0007506 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 9.2e-07 57.0 66 50.0
MELO3C005274.2 Cucumis melo HOM05D007313 ORTHO05D005299 1.2e-06 56.6 65 52.3
DCAR_026801 Daucus carota HOM05D007313 ORTHO05D005299 1.2e-06 56.6 76 44.7
TAR371G1237 Trochodendron aralioides HOM05D008500 ORTHO05D005299 1.2e-06 56.6 72 43.1
DCAR_023578 Daucus carota HOM05D007313 ORTHO05D005299 1.6e-06 56.2 77 44.2
Solyc04g007990.1 Solanum lycopersicum HOM05D007313 ORTHO05D005299 1.6e-06 56.2 51 58.8
TAR371G0465 Trochodendron aralioides HOM05D008500 ORTHO05D005299 1.6e-06 56.2 72 43.1
Psat7g008240 Pisum sativum HOM05D007313 ORTHO05D005299 2.7e-06 55.5 54 53.7
PGSC0003DMG400029516 Solanum tuberosum HOM05D007313 ORTHO05D005299 2.7e-06 55.5 51 58.8
SalBow2G1257 Salvia bowleyana HOM05D007313 ORTHO05D005299 3.5e-06 55.1 78 46.2
Ca_17263_v3 Cicer arietinum L. HOM05D007313 ORTHO05D005299 4.5e-06 54.7 55 56.4
Ca_17284_v3 Cicer arietinum L. HOM05D007313 ORTHO05D005299 4.5e-06 54.7 55 56.4
CsaV3_5G028140 Cucumis sativus L. HOM05D007313 ORTHO05D005299 5.9e-06 54.3 57 54.4
Migut.E00472 Erythranthe guttata HOM05D007313 ORTHO05D005299 7.8e-06 53.9 79 46.8
MBI19_g22070_MAGBIO Magnolia biondii HOM05D008500 ORTHO05D005299 7.8e-06 53.9 62 50.0


User provided reference genes

Program Settings