Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 3812.3 1921 100.0
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2904.8 1922 80.0
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2592.4 1922 71.2
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2499.9 1921 69.2
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2488.8 1921 69.0
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2479.9 1922 68.3
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2479.1 1921 68.3
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2478.4 1923 68.9
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2458.7 1922 68.4
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2455.6 1921 67.8
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2449.1 1921 67.6
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2448.7 1921 67.6
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2446.0 1923 67.7
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2444.5 1923 67.7
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2429.4 1921 67.1
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2428.3 1921 66.9
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2411.3 1926 66.0
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2395.2 1928 65.8
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2390.9 1922 65.6
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2375.5 1926 65.1
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2374.0 1924 65.0
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2372.8 1922 65.1
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2367.4 1908 65.7
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2363.6 1931 65.6
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2361.6 1906 65.7
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2354.3 1927 65.1
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2342.4 1924 64.8
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2337.8 1892 65.2
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2336.2 1923 65.1
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2325.8 1926 63.6
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2322.4 1825 67.9
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2317.0 1949 63.7
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2305.8 1924 64.3
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2303.9 1926 63.6
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2303.1 1934 63.9
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2292.7 1925 64.3
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2275.0 1815 66.4
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2270.4 1914 62.3
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2266.1 1935 62.6
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2248.4 1914 63.4
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2241.1 1915 62.9
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2239.9 1893 62.6
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2239.5 1922 62.6
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2230.7 1950 61.2
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2228.4 1924 61.8
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2223.4 1928 61.2
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2222.2 1952 62.2
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2218.7 1753 67.3
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2216.8 1900 62.1
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2216.8 1928 60.9
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2210.3 1910 61.5
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2209.9 1912 61.9
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2202.9 1935 61.4
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2202.9 1908 62.4
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2201.0 1922 62.1
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2193.3 1933 61.5
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2192.2 1907 61.4
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2192.2 1906 61.3
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2189.8 1710 67.4
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2187.1 1931 60.6
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2184.8 1933 61.0
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2183.3 1931 61.3
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2174.1 1933 61.1
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2171.7 1900 60.7
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2170.6 1922 61.0
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2143.6 1911 60.6
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2139.4 1925 60.7
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2133.6 1920 60.4
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2133.6 1545 72.6
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2129.8 1904 60.7
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2121.7 1812 62.8
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2110.5 1926 59.9
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2105.5 1924 59.8
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2104.7 1930 59.6
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2104.7 1930 59.5
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2101.6 2189 53.7
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2093.2 1924 59.6
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2091.2 1924 59.3
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2087.0 1928 59.2
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2076.2 1535 70.9
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2066.6 1926 58.8
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2062.3 1926 58.7
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2003.8 1861 58.8
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 1998.8 1603 66.1
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 1983.8 1929 56.1
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 1978.8 1925 55.8
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1951.4 1922 55.3
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1936.8 1916 56.2
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1925.6 1931 55.9
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1911.3 1931 55.2
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1885.5 1509 66.8
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1808.1 1909 52.8
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1775.4 1896 52.4
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1624.8 1871 51.1
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1602.0 1497 59.1
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1592.4 1552 57.3
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1558.9 1411 60.8
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1454.9 1628 52.3
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1394.0 1287 59.4
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1359.7 1343 54.1
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1345.5 1277 58.0
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1330.5 1960 41.6
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1273.1 1931 41.4
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1199.1 1893 38.9
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1111.7 952 63.1
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1090.5 1386 46.2
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1088.6 1927 39.1
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 4.8e-288 995.7 734 71.1
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 1.8e-263 914.1 581 78.1
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 2.2e-261 907.1 625 71.4
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.6e-241 840.5 601 70.2
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.4e-241 840.1 589 71.1
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 4.3e-236 823.2 708 62.4
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 8.9e-234 815.5 773 58.2
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 3.9e-221 773.5 702 60.1
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 2.0e-209 734.6 639 60.9
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 3.8e-200 703.7 515 70.3
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 5.4e-199 699.9 552 65.2
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.9e-196 691.4 672 57.0
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 2.7e-190 671.0 693 54.5
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 2.6e-185 654.4 515 65.2
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 6.0e-182 643.3 478 67.4
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 9.7e-180 636.0 415 77.3
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 7.7e-161 573.2 486 58.4
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 3.3e-156 557.8 339 85.3
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 2.8e-147 528.1 325 84.3
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.1e-146 526.2 692 47.3
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 1.7e-139 502.3 465 58.9
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 2.7e-121 441.8 385 59.5
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.0e-117 427.9 386 61.4
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 1.4e-109 402.9 236 80.5
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 4.0e-109 401.4 415 53.7
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.9e-106 392.5 465 51.4
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 1.7e-104 386.0 388 56.2
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 3.1e-101 375.2 251 72.5
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.2e-94 353.2 453 49.0
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 5.8e-92 344.4 544 40.4
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 5.8e-76 291.2 212 69.8
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 1.3e-70 273.5 170 79.4
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 7.6e-68 264.2 173 73.4
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 4.6e-57 228.4 142 75.4
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 8.5e-51 207.6 200 59.0
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.8e-48 199.9 210 54.3
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 4.8e-46 191.8 304 42.1
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 3.3e-39 169.1 152 62.5
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 1.7e-38 166.8 180 57.8
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 7.0e-37 161.4 111 73.0
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.6e-36 159.5 144 60.4
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 1.9e-34 153.3 103 72.8
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 8.8e-32 144.4 112 64.3
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 3.4e-31 142.5 117 60.7
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.7e-31 141.7 193 48.2
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.7e-31 141.7 193 48.2
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.7e-31 141.7 193 48.2
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.7e-31 141.7 193 48.2
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.7e-31 141.7 193 48.2
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.5e-31 141.4 193 47.7
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.8e-30 138.7 193 47.7
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 1.1e-29 137.5 193 47.2
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 1.4e-24 120.6 106 58.5
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 2.3e-24 119.8 106 57.5
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 8.8e-24 117.9 84 65.5
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.4e-23 115.9 180 44.4
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 4.4e-23 115.5 96 65.6
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.8e-23 114.4 180 43.9
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 2.8e-22 112.8 102 56.9
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 8.0e-17 94.7 74 59.5
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 1.7e-14 87.0 55 78.2
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 1.4e-13 84.0 51 70.6
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 1.2e-12 80.9 49 73.5
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.6e-12 80.5 56 66.1
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 5.9e-12 78.6 154 37.0
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 1.5e-10 73.9 54 70.4
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 3.6e-09 69.3 49 63.3
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.4e-08 67.4 67 56.7
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.5e-07 63.9 65 55.4
Psat6g165840 Pisum sativum HOM05D004417 ORTHO05D322506 8.3e-06 58.2 59 47.5


User provided reference genes

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