Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 3.0e-191 671.8 358 100.0
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 1.7e-186 656.0 358 98.0
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 9.9e-171 603.6 363 88.2
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 2.8e-133 479.2 363 71.3
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 3.6e-128 462.2 363 67.2
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 1.4e-127 460.3 365 67.7
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 1.4e-124 450.3 360 67.2
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 3.1e-124 449.1 363 63.6
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 6.9e-124 448.0 363 64.2
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 2.0e-123 446.4 360 66.4
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 3.4e-123 445.7 364 64.0
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 5.9e-123 444.9 358 65.1
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.0e-122 444.1 300 78.3
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 5.2e-119 431.8 359 64.3
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 6.7e-119 431.4 362 64.1
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 1.1e-118 430.6 406 57.1
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.1e-118 430.6 362 61.9
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 1.1e-118 430.6 362 61.9
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 2.0e-118 429.9 362 64.1
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 9.7e-118 427.6 363 61.7
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 2.8e-117 426.0 367 61.0
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 3.7e-117 425.6 363 61.7
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 8.2e-117 424.5 354 63.3
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.1e-116 424.1 362 61.3
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 1.4e-116 423.7 362 61.9
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.8e-116 423.3 358 62.0
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 1.8e-116 423.3 368 62.0
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 2.4e-116 422.9 358 62.3
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 5.3e-116 421.8 363 61.7
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 5.3e-116 421.8 358 61.5
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 7.0e-116 421.4 357 63.6
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 9.1e-116 421.0 362 64.1
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.2e-115 420.6 358 61.2
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.2e-115 420.6 358 61.2
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 1.6e-115 420.2 358 60.9
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 2.0e-115 419.9 355 64.5
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 1.0e-114 417.5 361 62.0
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 1.7e-114 416.8 361 61.8
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 2.9e-114 416.0 364 61.5
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 6.5e-114 414.8 357 61.3
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.9e-113 413.3 358 60.1
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 1.9e-113 413.3 366 60.1
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 4.2e-113 412.1 361 61.2
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 1.2e-112 410.6 361 61.2
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 2.1e-112 409.8 365 61.4
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 2.7e-112 409.5 340 64.4
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 2.7e-112 409.5 360 60.0
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 6.1e-112 408.3 364 59.3
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 1.0e-111 407.5 360 60.8
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 2.3e-111 406.4 364 61.0
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 8.8e-111 404.4 363 59.5
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 2.0e-110 403.3 350 60.9
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 2.0e-110 403.3 364 59.6
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 9.7e-110 401.0 364 58.8
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 9.7e-110 401.0 364 59.6
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 9.1e-108 394.4 357 59.7
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.6e-107 393.7 366 58.5
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.7e-106 390.2 353 60.3
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 3.8e-106 389.0 320 65.0
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 2.5e-105 386.3 408 55.1
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 2.5e-105 386.3 426 52.1
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 3.2e-105 386.0 347 59.4
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 1.4e-103 380.6 338 59.8
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 2.0e-102 376.7 360 56.9
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 2.0e-102 376.7 361 54.6
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 2.6e-102 376.3 361 55.7
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 1.7e-101 373.6 340 60.6
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 6.3e-101 371.7 361 57.9
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.1e-100 370.9 357 55.5
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 4.1e-100 369.0 357 56.6
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 9.1e-100 367.9 365 54.8
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 9.1e-100 367.9 387 53.5
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 9.1e-100 367.9 359 56.0
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 3.5e-99 365.9 357 55.7
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 2.9e-98 362.8 361 56.0
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 3.8e-98 362.5 358 55.9
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 5.0e-98 362.1 358 55.0
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 1.1e-97 360.9 365 56.4
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 2.5e-97 359.8 354 54.0
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 9.5e-97 357.8 358 54.5
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 1.2e-96 357.5 358 55.0
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.2e-96 357.5 363 54.3
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 3.6e-96 355.9 368 54.9
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 6.1e-96 355.1 302 64.2
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 1.0e-95 354.4 360 54.4
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 2.3e-95 353.2 359 54.6
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 5.2e-95 352.1 358 54.2
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 5.2e-95 352.1 360 53.9
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 8.9e-95 351.3 358 54.5
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 2.6e-94 349.7 370 51.6
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 3.4e-94 349.4 368 52.7
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 5.7e-94 348.6 359 54.6
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 2.2e-93 346.7 359 52.1
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.4e-92 344.0 359 54.3
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 1.3e-90 337.4 360 52.2
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 1.7e-90 337.0 295 63.4
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 2.3e-90 336.7 360 52.2
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 5.0e-90 335.5 359 51.5
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 1.2e-88 330.9 300 60.0
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.6e-88 330.5 360 51.7
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 8.0e-88 328.2 306 59.2
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 8.9e-87 324.7 357 51.8
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 1.6e-83 313.9 312 56.4
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 1.6e-83 313.9 351 50.4
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 6.0e-83 312.0 345 51.6
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 1.0e-82 311.2 281 62.6
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 3.9e-82 309.3 343 50.7
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 1.5e-78 297.4 357 45.4
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 1.9e-76 290.4 366 45.6
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 2.1e-75 287.0 354 48.9
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 7.3e-73 278.5 284 53.9
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 2.1e-72 276.9 375 42.9
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 4.7e-72 275.8 272 57.4
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 1.4e-71 274.2 238 60.9
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 1.2e-70 271.2 356 45.8
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 1.2e-70 271.2 362 42.0
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 1.4e-68 264.2 246 60.6
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 9.5e-65 251.5 342 43.9
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.8e-63 247.3 342 42.4
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 3.1e-63 246.5 240 57.9
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 5.4e-60 235.7 230 57.8
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 3.0e-58 229.9 360 39.4
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 8.1e-56 221.9 345 38.8
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 7.8e-51 205.3 273 46.5
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.0e-50 204.9 228 50.4
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.4e-47 194.5 237 50.2
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 1.5e-46 191.0 314 39.8
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 4.2e-44 183.0 298 37.9
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.8e-42 177.6 354 35.0
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 2.0e-38 164.1 128 65.6
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 1.2e-35 154.8 446 27.8
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 1.5e-33 147.9 186 47.3
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 4.3e-33 146.4 131 56.5
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 7.1e-28 129.0 373 29.2
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 6.3e-24 115.9 151 49.7
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 1.7e-21 107.8 163 38.0
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 3.8e-13 80.1 194 34.0
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 1.1e-12 78.6 55 65.5
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 1.6e-11 74.7 56 62.5
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 2.7e-11 73.9 56 62.5
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 1.8e-10 71.2 149 33.6
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 1.1e-09 68.6 344 22.1


User provided reference genes

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