Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 4.9e-164 581.3 333 100.0
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 8.4e-140 500.7 335 85.1
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.2e-130 470.3 337 75.4
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 4.0e-126 455.3 335 78.5
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 2.0e-88 330.1 333 65.5
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 2.0e-77 293.5 338 58.9
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 5.9e-77 292.0 332 60.8
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 5.5e-75 285.4 334 54.8
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 1.8e-73 280.4 351 53.3
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 7.5e-72 275.0 335 54.3
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.9e-71 272.3 335 53.7
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 2.9e-68 263.1 340 54.1
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.9e-67 260.4 339 54.3
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 9.5e-67 258.1 325 51.1
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 5.2e-65 252.3 318 54.4
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 3.4e-64 249.6 334 47.9
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 4.1e-62 242.7 324 48.8
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 1.1e-59 234.6 342 50.9
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 6.8e-57 225.3 329 43.8
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 8.3e-55 218.4 334 41.6
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.9e-54 217.2 332 46.1
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 1.9e-54 217.2 341 50.7
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 9.2e-54 214.9 332 43.1
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.2e-53 214.5 340 44.7
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 1.6e-53 214.2 335 51.3
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 2.7e-53 213.4 341 49.9
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.7e-53 213.4 341 49.6
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 2.7e-53 213.4 329 47.7
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.5e-53 213.0 340 50.3
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.5e-53 213.0 328 42.4
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 4.6e-53 212.6 341 49.3
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 7.8e-53 211.8 329 50.2
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.3e-52 211.1 323 46.7
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.7e-52 210.7 330 47.0
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.0e-52 209.9 323 46.4
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 5.1e-52 209.1 330 46.7
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 5.1e-52 209.1 327 46.8
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 8.6e-52 208.4 330 45.2
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 2.8e-50 203.4 340 40.3
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.6e-50 203.0 289 51.9
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.4e-49 201.1 332 44.6
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 4.0e-49 199.5 329 43.8
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 6.8e-49 198.7 331 50.5
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 8.9e-49 198.4 333 47.7
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.8e-48 195.7 333 39.0
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 9.9e-48 194.9 333 40.8
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 9.9e-48 194.9 331 40.2
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 2.2e-47 193.7 331 39.0
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 3.7e-47 193.0 335 49.0
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 4.9e-47 192.6 331 44.1
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 6.4e-47 192.2 333 44.1
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 8.3e-47 191.8 333 37.5
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 8.3e-47 191.8 329 38.0
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 8.3e-47 191.8 337 46.6
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 8.3e-47 191.8 333 39.9
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 1.4e-46 191.0 322 50.0
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.9e-46 190.7 338 46.4
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 2.4e-46 190.3 333 44.1
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 3.2e-46 189.9 338 41.7
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 9.2e-46 188.3 333 37.5
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 1.6e-45 187.6 324 45.4
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 4.6e-45 186.0 336 46.4
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 4.6e-45 186.0 341 43.7
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.7e-44 184.1 330 48.5
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 2.3e-44 183.7 327 45.3
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 3.0e-44 183.3 328 39.0
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 6.6e-44 182.2 335 45.1
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.1e-43 181.4 328 37.8
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 1.9e-43 180.6 333 45.3
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 4.3e-43 179.5 330 40.0
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.2e-42 177.9 334 43.7
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.2e-42 177.9 333 41.1
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-42 177.9 334 44.0
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 1.2e-42 177.9 334 44.3
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 1.2e-42 177.9 334 44.3
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 2.1e-42 177.2 330 40.0
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 2.8e-42 176.8 334 43.1
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 2.8e-42 176.8 334 43.1
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 4.7e-42 176.0 325 41.8
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 6.2e-42 175.6 332 43.1
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 1.4e-41 174.5 343 39.7
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 2.4e-41 173.7 333 42.9
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 2.4e-41 173.7 334 43.7
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 3.1e-41 173.3 333 42.9
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 5.2e-41 172.6 336 43.8
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 2.6e-40 170.2 332 41.9
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 2.6e-40 170.2 324 38.9
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 3.4e-40 169.9 341 44.3
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 3.4e-40 169.9 308 43.8
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 4.4e-40 169.5 329 37.7
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 9.9e-40 168.3 198 52.5
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.9e-39 166.8 335 43.3
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 3.8e-39 166.4 323 39.3
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 1.1e-38 164.9 323 39.0
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.4e-38 164.5 321 42.7
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 5.4e-38 162.5 195 46.7
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 5.4e-38 162.5 185 50.3
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 3.5e-37 159.8 336 43.5
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 2.3e-36 157.1 324 42.9
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 3.0e-36 156.8 329 41.6
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 5.1e-36 156.0 335 33.4
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 1.1e-35 154.8 326 42.0
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 1.9e-35 154.1 332 34.6
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 4.3e-35 152.9 331 39.0
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.8e-34 150.2 327 42.2
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 3.6e-34 149.8 336 42.6
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 4.8e-34 149.4 335 33.7
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.0e-33 146.4 304 36.2
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 5.3e-33 146.0 324 36.7
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 6.9e-33 145.6 326 40.2
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 6.9e-33 145.6 326 40.2
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 6.9e-33 145.6 326 40.2
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 2.0e-32 144.1 325 40.3
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.9e-31 140.2 329 36.5
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 3.8e-31 139.8 322 38.2
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 3.8e-31 139.8 332 37.3
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 4.9e-31 139.4 324 36.1
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.4e-30 137.9 324 38.9
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.4e-30 137.9 304 36.8
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 5.4e-30 136.0 315 42.2
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 5.4e-30 136.0 327 33.6
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 7.9e-29 132.1 316 42.1
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 7.9e-29 132.1 319 31.7
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.3e-28 131.3 319 32.0
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 5.1e-28 129.4 158 47.5
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 6.6e-28 129.0 322 33.9
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 8.7e-28 128.6 324 40.7
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 3.3e-27 126.7 315 41.0
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 5.6e-27 125.9 330 29.7
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 9.6e-27 125.2 310 34.2
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 2.8e-26 123.6 326 36.8
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 4.8e-26 122.9 316 42.1
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 6.2e-26 122.5 193 40.4
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 1.8e-25 120.9 278 43.9
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 6.9e-25 119.0 193 40.4
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.2e-24 118.2 322 35.1
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.6e-24 117.1 257 39.7
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.9e-22 110.9 195 40.0
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.9e-22 110.9 183 40.4
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 2.4e-22 110.5 313 34.2
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 2.4e-22 110.5 270 33.0
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 9.3e-22 108.6 267 41.9
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 1.3e-20 104.8 270 40.7
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 6.7e-20 102.4 292 32.5
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.6e-18 97.8 311 33.8
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 3.7e-18 96.7 308 28.2
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 3.7e-18 96.7 197 39.1
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 4.0e-17 93.2 258 39.5
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 1.4e-14 84.7 301 34.2
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 2.5e-14 84.0 273 42.9
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 7.9e-13 79.0 169 37.3
Lalb_Chr06g0166021 Lupinus albus HOM05D004679 ORTHO05D005524 3.3e-11 73.6 315 29.8
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 6.2e-10 69.3 69 47.8
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 3.2e-06 57.0 132 34.1
unitig_26.g10255 Utricularia gibba HOM05D004679 ORTHO05D005524 7.2e-06 55.8 216 25.5


User provided reference genes

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