Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 5.2e-73 278.5 147 100.0
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 5.1e-68 261.9 146 94.5
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 4.3e-67 258.8 147 93.2
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 6.2e-66 255.0 146 92.5
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 1.0e-60 237.7 148 86.5
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 3.9e-60 235.7 147 87.1
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 6.6e-60 235.0 147 86.4
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 8.6e-60 234.6 147 85.0
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 8.6e-60 234.6 144 84.7
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 1.5e-59 233.8 149 85.9
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 1.5e-59 233.8 147 85.0
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 4.3e-59 232.3 147 85.0
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 4.3e-59 232.3 145 86.9
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 4.3e-59 232.3 144 84.0
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 5.6e-59 231.9 147 84.4
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 7.3e-59 231.5 144 83.3
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 7.3e-59 231.5 142 86.6
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 7.3e-59 231.5 142 86.6
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 9.5e-59 231.1 145 86.9
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 9.5e-59 231.1 145 86.2
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 1.6e-58 230.3 143 86.0
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 1.6e-58 230.3 145 86.2
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 1.6e-58 230.3 145 84.1
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 2.1e-58 229.9 147 85.0
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 2.1e-58 229.9 147 83.0
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 2.8e-58 229.6 144 86.8
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 2.8e-58 229.6 150 82.0
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 2.8e-58 229.6 145 84.1
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 3.6e-58 229.2 147 84.4
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 4.7e-58 228.8 145 85.5
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 6.2e-58 228.4 142 84.5
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 8.1e-58 228.0 143 87.4
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 8.1e-58 228.0 143 87.4
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 8.1e-58 228.0 142 85.9
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 8.1e-58 228.0 147 83.0
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 1.4e-57 227.3 145 82.1
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 1.8e-57 226.9 145 84.1
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 2.4e-57 226.5 132 91.7
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 2.4e-57 226.5 146 82.2
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.4e-57 226.5 144 86.1
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 2.4e-57 226.5 142 83.1
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 2.4e-57 226.5 145 81.4
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 3.1e-57 226.1 140 85.0
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 6.8e-57 224.9 145 81.4
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 8.9e-57 224.6 145 84.1
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.2e-56 224.2 144 79.9
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 1.2e-56 224.2 145 84.1
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 1.5e-56 223.8 144 81.9
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.5e-56 223.8 147 82.3
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 2.0e-56 223.4 148 81.8
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 3.4e-56 222.6 142 85.2
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 3.4e-56 222.6 145 81.4
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 5.8e-56 221.9 145 82.1
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 7.6e-56 221.5 145 83.4
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 7.6e-56 221.5 147 82.3
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 7.6e-56 221.5 144 79.9
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 9.9e-56 221.1 145 82.1
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 9.9e-56 221.1 145 84.1
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 1.3e-55 220.7 144 79.9
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 1.3e-55 220.7 144 79.9
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 1.7e-55 220.3 144 81.9
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 2.2e-55 219.9 134 90.3
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 2.2e-55 219.9 144 80.6
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 2.2e-55 219.9 148 80.4
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 2.9e-55 219.5 146 80.8
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 2.9e-55 219.5 142 83.1
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 2.9e-55 219.5 142 83.1
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 3.8e-55 219.2 145 82.1
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 3.8e-55 219.2 145 81.4
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 4.9e-55 218.8 146 81.5
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 4.9e-55 218.8 133 90.2
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 6.4e-55 218.4 148 79.7
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 6.4e-55 218.4 144 79.2
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 6.4e-55 218.4 148 79.7
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 8.4e-55 218.0 145 82.1
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 8.4e-55 218.0 148 79.7
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 1.1e-54 217.6 145 83.4
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 1.1e-54 217.6 145 82.1
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 1.4e-54 217.2 145 79.3
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 1.9e-54 216.9 145 80.7
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 2.4e-54 216.5 145 80.7
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 2.4e-54 216.5 144 79.9
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 2.4e-54 216.5 148 79.1
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 4.2e-54 215.7 144 80.6
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 5.4e-54 215.3 133 88.7
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 5.4e-54 215.3 144 78.5
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 5.4e-54 215.3 148 78.4
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 7.1e-54 214.9 145 79.3
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 9.2e-54 214.5 149 79.9
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 1.2e-53 214.2 144 80.6
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 1.6e-53 213.8 144 80.6
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 2.1e-53 213.4 147 77.6
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 2.1e-53 213.4 142 81.7
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 7.8e-53 211.5 148 79.7
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 7.8e-53 211.5 148 79.7
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 1.7e-52 210.3 134 82.8
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 3.9e-52 209.1 145 80.0
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 5.1e-52 208.8 144 76.4
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 6.6e-52 208.4 134 85.1
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 6.6e-52 208.4 145 78.6
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 8.7e-52 208.0 150 76.7
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 8.7e-52 208.0 150 76.7
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 8.7e-52 208.0 150 76.7
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 8.7e-52 208.0 144 78.5
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 1.1e-51 207.6 136 83.1
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 1.1e-51 207.6 132 86.4
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 1.5e-51 207.2 130 86.9
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 1.9e-51 206.8 145 78.6
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 1.9e-51 206.8 151 74.8
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 1.9e-51 206.8 151 74.8
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 1.9e-51 206.8 151 74.8
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 1.9e-51 206.8 151 75.5
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 2.5e-51 206.5 149 75.2
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 2.5e-51 206.5 134 84.3
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 3.3e-51 206.1 150 76.0
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 3.3e-51 206.1 150 76.0
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 9.6e-51 204.5 151 74.2
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 9.6e-51 204.5 151 74.2
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 9.6e-51 204.5 151 74.2
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 1.2e-50 204.1 142 75.4
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.6e-50 203.8 145 76.6
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 1.6e-50 203.8 151 75.5
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 2.8e-50 203.0 142 75.4
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 4.7e-50 202.2 147 78.2
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 6.2e-50 201.8 151 74.8
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 1.1e-49 201.1 147 77.6
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 5.3e-49 198.7 146 76.0
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 7.6e-48 194.9 136 80.1
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 4.9e-47 192.2 136 78.7
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 8.4e-47 191.4 136 80.1
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 7.1e-46 188.3 136 77.9
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 5.6e-43 178.7 148 67.6
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 1.4e-41 174.1 131 74.8
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 5.3e-41 172.2 125 72.0
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 5.3e-41 172.2 130 70.8
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 3.2e-38 162.9 116 77.6
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 6.0e-37 158.7 121 76.0
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 2.0e-32 143.7 145 60.7
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 7.6e-32 141.7 133 62.4
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 1.7e-31 140.6 124 64.5
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 3.8e-31 139.4 127 61.4
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 8.4e-31 138.3 108 70.4
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 1.6e-29 134.0 85 90.6
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 8.2e-26 121.7 112 61.6
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 5.8e-24 115.5 107 60.7
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 3.8e-23 112.8 131 54.2
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 6.5e-23 112.1 79 64.6
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 9.3e-22 108.2 148 53.4
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 1.2e-21 107.8 99 63.6
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 2.5e-19 100.1 68 85.3
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 2.5e-19 100.1 68 85.3
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 3.3e-19 99.8 86 68.6
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.7e-15 87.4 66 81.8
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 1.7e-15 87.4 72 70.8
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.9e-14 84.0 64 78.1
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 6.5e-07 58.9 40 60.0
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 2.5e-06 57.0 35 77.1


User provided reference genes

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