Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 2.3e-100 369.0 198 100.0
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.9e-91 339.3 198 92.4
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 4.6e-85 318.2 198 87.4
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 4.8e-82 308.1 194 84.0
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 6.2e-82 307.8 197 85.8
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 1.8e-81 306.2 189 86.2
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 3.1e-81 305.4 193 84.5
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.4e-80 302.0 191 83.8
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 3.4e-80 302.0 188 85.6
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 7.6e-80 300.8 195 82.6
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 9.9e-80 300.4 190 85.3
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 9.9e-80 300.4 184 84.8
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 9.9e-80 300.4 193 82.9
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 2.2e-79 299.3 196 82.7
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 3.8e-79 298.5 196 82.1
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 6.4e-79 297.7 193 82.9
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.1e-78 297.0 199 80.4
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 1.1e-78 297.0 191 81.2
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 1.1e-78 297.0 190 84.2
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.4e-78 296.6 193 82.4
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.4e-78 296.6 193 82.9
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 1.9e-78 296.2 196 80.6
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 2.4e-78 295.8 194 81.4
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 3.2e-78 295.4 197 81.2
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 4.2e-78 295.0 195 82.1
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 4.2e-78 295.0 191 82.7
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 5.4e-78 294.7 181 84.5
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 5.4e-78 294.7 242 71.1
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 7.1e-78 294.3 191 82.7
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 7.1e-78 294.3 198 78.8
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 9.3e-78 293.9 188 81.9
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.6e-77 293.1 193 81.9
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.6e-77 293.1 193 81.9
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 1.6e-77 293.1 182 83.0
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 2.1e-77 292.7 196 80.1
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 2.1e-77 292.7 191 82.7
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.7e-77 292.4 199 79.9
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 2.7e-77 292.4 199 79.9
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 2.7e-77 292.4 195 80.0
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 2.7e-77 292.4 179 83.8
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.7e-77 292.4 187 80.7
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 4.6e-77 291.6 197 80.2
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 4.6e-77 291.6 168 88.1
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 1.0e-76 290.4 191 82.2
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.3e-76 290.0 190 81.1
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 1.7e-76 289.7 198 78.8
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 2.3e-76 289.3 185 81.6
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 2.3e-76 289.3 200 80.0
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.0e-76 288.9 191 80.6
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 3.0e-76 288.9 182 83.5
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 3.9e-76 288.5 185 78.9
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 5.1e-76 288.1 175 84.6
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 8.7e-76 287.3 179 81.0
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 8.7e-76 287.3 198 77.8
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 8.7e-76 287.3 189 76.7
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 1.1e-75 287.0 198 76.8
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.1e-75 287.0 173 85.0
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.5e-75 286.6 178 82.0
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.9e-75 286.2 207 74.9
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 2.5e-75 285.8 194 77.3
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 2.5e-75 285.8 191 79.1
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 2.5e-75 285.8 180 78.9
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 4.3e-75 285.0 191 79.6
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 7.3e-75 284.3 198 76.8
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 1.3e-74 283.5 191 79.1
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.3e-74 283.5 178 82.0
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.6e-74 283.1 197 77.2
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 2.1e-74 282.7 185 80.0
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 2.8e-74 282.3 191 79.1
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 6.2e-74 281.2 178 81.5
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 8.1e-74 280.8 183 80.3
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 8.1e-74 280.8 200 76.0
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 1.1e-73 280.4 198 75.8
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 1.4e-73 280.0 184 81.0
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.4e-73 280.0 173 81.5
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 1.4e-73 280.0 200 77.5
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.8e-73 279.6 183 79.8
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.8e-73 279.6 181 77.9
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 2.4e-73 279.3 195 77.4
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 3.1e-73 278.9 200 77.5
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 4.0e-73 278.5 191 78.0
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 4.0e-73 278.5 198 75.8
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 4.0e-73 278.5 198 75.8
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 5.3e-73 278.1 167 84.4
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 5.3e-73 278.1 174 81.6
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 6.9e-73 277.7 185 78.4
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 9.0e-73 277.3 198 75.3
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.2e-72 276.9 197 75.1
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 1.5e-72 276.6 188 76.1
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 2.6e-72 275.8 183 78.7
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 4.5e-72 275.0 183 78.7
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 4.5e-72 275.0 183 78.7
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.5e-72 275.0 197 75.1
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 5.8e-72 274.6 183 78.7
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 7.6e-72 274.2 185 78.9
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 9.9e-72 273.9 178 79.8
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 2.2e-71 272.7 179 78.8
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 2.2e-71 272.7 180 80.0
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 4.9e-71 271.6 195 74.9
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 1.4e-70 270.0 198 73.7
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 1.4e-70 270.0 198 73.7
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 1.4e-70 270.0 198 73.7
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 1.4e-70 270.0 198 73.7
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 1.4e-70 270.0 155 89.7
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 3.2e-70 268.9 224 67.4
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 7.9e-69 264.2 233 64.8
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 1.0e-68 263.8 235 65.5
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 6.7e-68 261.2 159 86.2
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.5e-67 260.0 195 71.8
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 7.4e-67 257.7 182 77.5
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 1.3e-66 256.9 176 76.7
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 7.6e-64 247.7 243 59.3
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 1.0e-63 247.3 159 79.2
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 1.1e-62 243.8 187 65.8
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 1.4e-62 243.4 179 69.3
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 2.1e-61 239.6 189 69.3
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-59 233.4 191 69.1
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 1.5e-59 233.4 183 64.5
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 2.1e-58 229.6 134 88.1
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 4.8e-58 228.4 144 83.3
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 1.4e-57 226.9 143 81.1
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 6.9e-57 224.6 173 65.9
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 1.0e-55 220.7 137 85.4
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.2e-55 219.5 134 85.1
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 1.4e-54 216.9 173 61.3
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 4.6e-53 211.8 137 82.5
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.3e-51 205.7 127 82.7
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 7.4e-51 204.5 125 82.4
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 3.7e-50 202.2 146 74.0
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 7.7e-48 194.5 206 59.2
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 6.5e-47 191.4 130 74.6
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 4.2e-46 188.7 110 87.3
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.0e-44 184.1 130 75.4
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.1e-41 174.1 117 78.6
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.1e-41 172.2 109 81.7
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.7e-39 166.8 102 80.4
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 2.1e-37 159.8 104 77.9
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.7e-34 150.2 191 44.5
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.8e-34 148.7 93 79.6
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 7.0e-33 144.8 167 44.3
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 9.1e-33 144.4 96 85.4
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 9.1e-33 144.4 106 75.5
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 2.0e-32 143.3 102 73.5
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 4.5e-32 142.1 98 82.7
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.5e-30 135.2 81 84.0
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 2.3e-28 129.8 75 86.7
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 4.0e-28 129.0 185 35.7
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 4.0e-28 129.0 161 41.6
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 2.6e-27 126.3 104 68.3
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 1.7e-26 123.6 101 68.3
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.4e-25 119.8 100 68.0
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 9.1e-25 117.9 88 64.8
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.1e-17 94.4 63 76.2
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-14 84.3 56 78.6
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.2e-13 80.9 111 48.6
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.1e-13 80.1 46 82.6
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.6e-13 79.3 111 47.7
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.6e-13 79.3 111 47.7
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.4e-12 77.4 111 46.8
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.8e-12 77.0 111 46.8
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 4.9e-10 68.9 71 60.6
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 2.7e-08 63.2 114 41.2
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 3.5e-08 62.8 36 83.3
Glyma.07G158050 Glycine max HOM05D004325 ORTHO05D022134 8.6e-07 58.2 53 62.3


User provided reference genes

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