Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 2.9e-131 471.9 229 100.0
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 6.9e-125 450.7 227 95.6
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.1e-119 433.3 227 91.6
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 9.0e-117 423.7 223 89.2
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 3.4e-116 421.8 223 88.3
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.5e-116 421.4 223 88.3
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.8e-115 418.3 223 87.9
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 3.8e-115 418.3 226 88.1
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 4.2e-114 414.8 225 87.1
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 5.4e-114 414.5 226 86.3
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 7.1e-114 414.1 220 88.6
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 9.3e-114 413.7 224 87.5
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 2.1e-113 412.5 223 86.5
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 2.7e-113 412.1 226 86.3
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 1.0e-112 410.2 221 88.2
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 1.8e-112 409.5 224 85.7
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 3.9e-112 408.3 219 87.2
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 5.1e-112 407.9 219 88.6
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 6.7e-112 407.5 224 86.2
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 4.3e-111 404.8 224 84.8
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 4.3e-111 404.8 224 85.7
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 5.6e-111 404.4 228 83.8
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 7.4e-111 404.1 221 86.9
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 7.4e-111 404.1 223 84.8
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 7.4e-111 404.1 224 85.7
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 7.4e-111 404.1 222 84.7
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 9.6e-111 403.7 220 87.7
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.3e-110 403.3 224 85.3
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 1.3e-110 403.3 224 84.8
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 1.6e-110 402.9 224 84.4
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 2.1e-110 402.5 221 85.5
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 2.1e-110 402.5 219 85.4
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 2.8e-110 402.1 224 85.7
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 4.8e-110 401.4 224 84.8
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 4.8e-110 401.4 224 85.3
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 4.8e-110 401.4 224 85.3
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 6.2e-110 401.0 221 84.6
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 8.1e-110 400.6 224 86.2
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 1.1e-109 400.2 221 84.6
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 1.4e-109 399.8 218 86.7
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.4e-109 399.8 219 86.3
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 1.8e-109 399.4 226 83.2
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 1.8e-109 399.4 221 85.5
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.4e-109 399.1 224 83.9
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 2.4e-109 399.1 221 84.6
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.1e-109 398.7 229 83.4
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 4.0e-109 398.3 225 84.4
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 5.3e-109 397.9 218 86.7
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 5.3e-109 397.9 221 85.1
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 5.3e-109 397.9 223 85.2
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 6.9e-109 397.5 221 84.6
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 6.9e-109 397.5 221 85.5
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 1.2e-108 396.7 219 85.4
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 1.2e-108 396.7 224 83.5
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 1.2e-108 396.7 220 83.6
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 1.2e-108 396.7 224 83.0
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.5e-108 396.4 219 83.6
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 1.5e-108 396.4 216 87.0
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 2.0e-108 396.0 224 85.7
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.0e-108 396.0 219 85.8
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 2.0e-108 396.0 222 82.9
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 2.6e-108 395.6 220 83.6
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 3.4e-108 395.2 225 83.1
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 3.4e-108 395.2 210 88.1
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 4.5e-108 394.8 219 84.0
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 5.8e-108 394.4 218 85.8
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 9.9e-108 393.7 218 84.9
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.3e-107 393.3 219 82.6
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.3e-107 393.3 235 80.9
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 1.7e-107 392.9 221 85.1
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.7e-107 392.9 210 87.6
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 2.2e-107 392.5 221 84.6
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 2.2e-107 392.5 218 83.9
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 2.9e-107 392.1 221 82.8
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 2.9e-107 392.1 219 83.6
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.8e-107 391.7 224 82.6
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 3.8e-107 391.7 224 83.5
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 3.8e-107 391.7 227 80.2
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 3.8e-107 391.7 221 83.3
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 8.4e-107 390.6 219 82.6
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 8.4e-107 390.6 220 82.7
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 1.4e-106 389.8 221 81.4
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 1.4e-106 389.8 221 81.4
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 1.4e-106 389.8 221 81.4
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 1.4e-106 389.8 221 81.4
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 1.4e-106 389.8 219 82.6
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.9e-106 389.4 251 76.1
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 3.2e-106 388.7 219 82.2
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 4.2e-106 388.3 221 82.8
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 5.5e-106 387.9 219 82.2
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 7.1e-106 387.5 219 81.7
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 9.3e-106 387.1 221 83.7
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 2.1e-105 386.0 223 82.5
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 2.1e-105 386.0 221 81.4
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 2.1e-105 386.0 227 79.3
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 2.7e-105 385.6 215 85.6
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 3.5e-105 385.2 218 82.1
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 6.0e-105 384.4 219 81.3
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 6.0e-105 384.4 219 81.3
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 1.3e-104 383.3 248 74.6
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 3.0e-104 382.1 222 82.0
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 3.0e-104 382.1 219 81.3
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 3.9e-104 381.7 221 80.5
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 3.9e-104 381.7 218 82.1
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.9e-104 381.7 221 81.0
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 1.1e-103 380.2 219 81.3
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 2.5e-103 379.0 219 80.4
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 2.5e-103 379.0 219 80.4
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 4.3e-103 378.3 219 79.9
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 1.1e-101 373.6 221 81.9
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 2.4e-101 372.5 227 77.1
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.0e-100 369.4 276 67.0
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 3.4e-100 368.6 215 79.5
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.3e-99 366.7 220 78.2
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 8.4e-99 364.0 220 77.7
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 5.5e-98 361.3 214 78.0
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 6.0e-97 357.8 204 82.4
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.0e-96 357.1 222 72.1
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 6.5e-91 337.8 228 72.4
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 4.6e-89 331.6 223 67.7
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 9.7e-87 323.9 223 66.4
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 2.2e-86 322.8 220 66.8
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 5.9e-84 314.7 220 65.5
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.4e-80 303.5 164 89.6
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 4.4e-79 298.5 163 88.3
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 3.8e-75 285.4 169 76.9
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.0e-72 275.8 153 83.0
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.8e-70 269.2 160 75.6
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 5.9e-68 261.5 215 56.7
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 5.7e-63 245.0 131 84.0
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.3e-62 241.5 163 71.2
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 6.1e-57 224.9 217 50.7
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 6.1e-57 224.9 130 80.0
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 6.8e-56 221.5 209 53.1
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 8.3e-54 214.5 214 47.7
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 9.1e-53 211.1 145 75.9
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 5.9e-52 208.4 111 89.2
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 1.2e-49 200.7 114 79.8
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 8.0e-49 198.0 115 78.3
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 5.0e-43 178.7 130 60.0
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 3.0e-35 152.9 86 77.9
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 6.6e-35 151.8 102 71.6
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.2e-33 147.5 220 37.3
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 1.3e-30 137.5 94 75.5
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 2.2e-30 136.7 134 52.2
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 9.2e-29 131.3 75 85.3
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.9e-27 125.9 66 87.9
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.2e-25 120.9 75 82.7
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 1.6e-25 120.6 61 90.2
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 8.1e-25 118.2 108 55.6
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 1.6e-20 104.0 61 86.9
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 2.7e-20 103.2 58 87.9
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 1.0e-19 101.3 54 83.3
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 3.0e-19 99.8 64 78.1
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 3.9e-19 99.4 61 80.3
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 9.6e-18 94.7 65 63.1
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 8.1e-17 91.7 64 71.9
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.2e-15 87.8 125 45.6
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 2.2e-14 83.6 51 84.3
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 7.1e-13 78.6 100 45.0
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 6.0e-12 75.5 50 72.0
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 2.5e-10 70.1 39 79.5
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 2.6e-07 60.1 37 83.8
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 4.4e-07 59.3 35 80.0


User provided reference genes

Program Settings