Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 3.1e-254 881.3 454 100.0
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 5.8e-160 568.2 377 80.4
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 2.7e-157 559.3 377 79.8
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 7.9e-149 531.2 378 75.7
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 4.2e-142 508.8 382 73.0
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 7.9e-141 504.6 387 72.1
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 1.7e-138 496.9 365 74.0
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 2.8e-138 496.1 379 72.0
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 7.7e-136 488.0 388 69.3
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 7.7e-136 488.0 377 71.4
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 2.2e-135 486.5 377 70.8
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 6.5e-135 485.0 395 68.1
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 1.9e-134 483.4 386 69.7
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 1.9e-134 483.4 385 69.6
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 3.2e-134 482.6 376 70.2
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 4.2e-134 482.3 380 71.1
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 5.5e-134 481.9 316 80.1
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 9.4e-134 481.1 367 71.1
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 9.4e-134 481.1 363 71.9
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.2e-133 480.7 361 70.4
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.2e-133 480.7 361 70.4
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 1.6e-133 480.3 374 70.1
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 2.1e-133 479.9 387 69.3
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 3.6e-133 479.2 367 69.8
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 3.6e-133 479.2 369 69.9
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 4.7e-133 478.8 372 70.4
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 1.0e-132 477.6 406 66.0
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 1.4e-132 477.2 376 69.4
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 1.8e-132 476.9 358 72.1
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 3.9e-132 475.7 318 78.3
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 6.7e-132 474.9 383 67.1
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 1.5e-131 473.8 362 69.9
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 1.3e-130 470.7 352 71.9
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 4.8e-130 468.8 369 68.3
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 1.1e-129 467.6 343 73.2
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 1.4e-129 467.2 349 71.9
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.4e-129 466.5 354 70.9
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.4e-129 466.5 354 70.9
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 3.1e-129 466.1 366 68.3
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 3.1e-129 466.1 382 67.0
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 4.1e-129 465.7 367 70.0
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 4.1e-129 465.7 374 67.1
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 5.3e-129 465.3 367 68.4
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 7.0e-129 464.9 368 69.3
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 7.0e-129 464.9 340 71.2
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.6e-128 463.8 341 73.0
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 4.5e-128 462.2 368 68.5
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 5.9e-128 461.8 361 69.0
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 7.7e-128 461.5 314 76.8
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 7.7e-128 461.5 364 68.4
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 1.0e-127 461.1 335 71.3
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 2.2e-127 459.9 357 68.6
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 2.2e-127 459.9 352 69.6
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 3.8e-127 459.1 314 76.1
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 3.8e-127 459.1 352 69.9
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 8.5e-127 458.0 352 69.3
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 1.5e-126 457.2 380 65.8
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 2.5e-126 456.4 362 67.4
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 4.2e-126 455.7 385 64.7
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 4.2e-126 455.7 378 66.4
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 4.2e-126 455.7 390 65.4
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 5.5e-126 455.3 385 64.7
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 7.2e-126 454.9 345 70.7
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 9.4e-126 454.5 316 74.4
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 9.4e-126 454.5 367 67.8
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 1.6e-125 453.8 380 65.0
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 1.6e-125 453.8 380 65.0
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 1.6e-125 453.8 380 65.0
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 3.6e-125 452.6 352 68.5
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 3.6e-125 452.6 326 72.4
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 8.0e-125 451.4 362 69.9
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 1.8e-124 450.3 381 64.0
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 1.5e-123 447.2 352 68.2
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 4.4e-123 445.7 361 66.8
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 4.4e-123 445.7 361 66.8
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 4.4e-123 445.7 361 66.8
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 7.5e-123 444.9 380 63.9
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 9.7e-123 444.5 361 66.5
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 1.7e-122 443.7 291 79.4
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.2e-122 443.4 372 66.4
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 4.8e-122 442.2 322 71.4
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 8.2e-122 441.4 368 66.3
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 8.2e-122 441.4 364 66.5
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 8.2e-122 441.4 361 66.5
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 1.4e-121 440.7 377 63.9
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.8e-121 440.3 363 66.4
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 1.8e-121 440.3 364 66.5
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 2.4e-121 439.9 314 72.3
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 2.4e-121 439.9 351 68.1
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 3.1e-121 439.5 381 63.5
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 4.1e-121 439.1 363 65.8
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 1.6e-120 437.2 295 74.6
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 4.5e-120 435.6 362 64.9
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.7e-119 433.7 372 65.6
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.0e-119 432.2 401 61.1
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.5e-118 430.6 360 66.1
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 9.4e-118 427.9 366 62.6
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 3.6e-117 426.0 355 67.6
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.3e-116 423.3 351 66.7
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 3.0e-116 422.9 349 66.5
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 8.8e-116 421.4 321 71.0
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.2e-115 421.0 388 61.9
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 1.2e-115 421.0 311 69.5
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 2.2e-114 416.8 299 69.9
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 4.1e-113 412.5 344 67.4
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 1.2e-112 411.0 415 57.8
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.7e-112 409.8 311 68.5
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 6.6e-111 405.2 363 62.5
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 8.6e-111 404.8 320 65.0
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.9e-110 403.7 322 64.9
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 2.1e-109 400.2 362 59.9
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 8.9e-108 394.8 313 68.7
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 1.2e-107 394.4 309 67.0
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 8.3e-106 388.3 356 58.4
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 3.1e-105 386.3 375 61.6
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 2.7e-104 383.3 327 61.8
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 3.5e-104 382.9 263 76.8
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 1.5e-102 377.5 314 66.6
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 4.3e-102 375.9 294 66.0
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 1.4e-100 370.9 323 63.5
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.3e-100 370.2 354 60.2
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 7.0e-97 358.6 234 78.6
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 1.7e-95 354.0 354 58.2
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 7.3e-94 348.6 346 59.2
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.8e-93 346.7 380 52.6
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.8e-93 346.7 380 52.6
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 9.8e-91 338.2 317 59.3
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 7.0e-89 332.0 242 73.6
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 1.2e-88 331.3 261 65.9
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 7.8e-88 328.6 347 55.0
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 6.6e-87 325.5 220 76.4
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 7.3e-86 322.0 246 67.1
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.9e-78 297.4 244 66.8
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.4e-73 280.4 242 63.2
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 9.6e-70 268.5 256 61.3
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.4e-68 264.6 226 61.9
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 8.4e-66 255.4 193 68.9
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.8e-60 237.7 197 67.5
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.5e-59 233.0 167 74.3
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 4.3e-46 189.9 190 56.3
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 6.0e-40 169.5 133 63.2
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.3e-39 168.3 118 71.2
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.4e-36 158.3 124 63.7
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.7e-32 144.1 141 57.4
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 4.6e-32 143.3 131 64.1
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 1.4e-31 141.7 117 70.1
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 5.1e-31 139.8 121 67.8
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.8e-29 134.0 88 75.0
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 4.8e-29 133.3 141 56.7
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.2e-26 124.4 81 76.5
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.4e-25 121.7 88 73.9
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.5e-22 111.7 86 65.1
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.4e-20 104.4 79 62.0
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 7.7e-19 99.4 287 26.5
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 3.8e-18 97.1 50 84.0
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 1.2e-16 92.0 79 67.1
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.7e-16 90.1 52 71.2
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 1.0e-15 89.0 73 71.2
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 1.2e-06 58.9 52 57.7


User provided reference genes

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