Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 7.1e-156 553.9 282 100.0
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 6.1e-107 391.3 281 76.2
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 7.9e-107 391.0 282 76.6
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 5.1e-106 388.3 319 69.6
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.7e-85 320.1 282 63.5
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 1.9e-76 290.0 279 58.4
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 2.1e-75 286.6 280 57.9
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 8.0e-75 284.6 278 57.9
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 6.8e-74 281.6 277 57.8
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 1.2e-73 280.8 278 58.6
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.0e-73 280.0 282 57.1
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 3.4e-73 279.3 280 57.5
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 4.4e-73 278.9 278 58.3
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 5.7e-73 278.5 279 57.7
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 5.7e-73 278.5 279 56.6
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 1.3e-72 277.3 278 56.8
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.9e-72 276.2 278 57.9
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 3.7e-72 275.8 278 57.6
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 3.7e-72 275.8 278 55.8
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 3.7e-72 275.8 278 55.8
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 8.3e-72 274.6 278 55.8
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 1.8e-71 273.5 279 54.8
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 2.4e-71 273.1 200 69.5
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 3.2e-71 272.7 278 55.4
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 4.1e-71 272.3 277 55.2
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 5.4e-71 271.9 277 57.8
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 5.4e-71 271.9 310 51.6
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 9.2e-71 271.2 278 56.5
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.2e-70 270.8 278 55.4
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 2.0e-70 270.0 278 55.8
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 2.7e-70 269.6 278 55.0
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 3.5e-70 269.2 199 66.3
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 5.9e-70 268.5 277 54.9
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 7.8e-70 268.1 198 70.2
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 7.8e-70 268.1 171 80.1
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.0e-69 267.7 286 55.2
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.7e-69 266.9 276 57.2
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.3e-69 266.5 278 56.5
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 2.9e-69 266.2 280 54.6
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 5.6e-68 261.9 280 54.3
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 7.3e-68 261.5 277 54.5
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 7.3e-68 261.5 281 54.1
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 1.2e-67 260.8 277 54.2
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 1.2e-67 260.8 278 55.0
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 1.2e-67 260.8 279 54.1
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 6.2e-67 258.5 282 55.0
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 6.2e-67 258.5 281 54.1
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 8.0e-67 258.1 181 71.8
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 8.0e-67 258.1 269 56.9
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 1.4e-66 257.3 198 66.2
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 3.1e-66 256.1 214 62.6
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.0e-66 255.8 276 55.4
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 5.2e-66 255.4 278 52.2
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.2e-65 254.2 280 53.6
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 1.2e-65 254.2 197 67.0
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 1.2e-65 254.2 278 51.8
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 1.5e-65 253.8 278 51.8
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 2.0e-65 253.4 278 51.8
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 2.0e-65 253.4 194 66.0
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 2.6e-65 253.1 278 52.9
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 3.4e-65 252.7 279 54.1
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 5.8e-65 251.9 278 52.5
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 7.5e-65 251.5 283 54.1
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 1.7e-64 250.4 201 65.2
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.7e-64 250.4 210 65.2
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 2.9e-64 249.6 220 63.6
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 3.7e-64 249.2 279 51.6
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 4.9e-64 248.8 198 66.2
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 1.1e-63 247.7 282 53.5
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 1.1e-63 247.7 194 64.9
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 1.1e-63 247.7 169 73.4
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 3.2e-63 246.1 277 52.7
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 4.1e-63 245.7 199 64.8
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 4.1e-63 245.7 178 70.2
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 1.2e-62 244.2 199 61.8
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 2.7e-62 243.0 201 63.7
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 3.5e-62 242.7 278 52.2
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 4.6e-62 242.3 284 53.2
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 4.6e-62 242.3 278 52.2
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 6.0e-62 241.9 197 65.0
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 6.0e-62 241.9 198 63.6
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 7.8e-62 241.5 175 69.1
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 2.3e-61 240.0 198 63.1
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 2.3e-61 240.0 198 63.1
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 3.9e-61 239.2 280 52.1
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 5.0e-61 238.8 209 60.3
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 5.0e-61 238.8 280 51.4
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 1.5e-60 237.3 275 50.9
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 1.5e-60 237.3 277 50.5
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 1.9e-60 236.9 278 50.0
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 4.3e-60 235.7 198 62.1
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 5.6e-60 235.3 174 67.2
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 7.3e-60 235.0 197 62.4
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 1.2e-59 234.2 162 72.8
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 2.1e-59 233.4 155 75.5
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 3.6e-59 232.6 155 74.8
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 3.6e-59 232.6 167 71.3
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 3.6e-59 232.6 284 49.6
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 4.7e-59 232.3 155 74.8
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 4.7e-59 232.3 277 50.2
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 6.2e-59 231.9 277 50.5
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 8.1e-59 231.5 283 49.5
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 1.1e-58 231.1 278 50.4
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 1.1e-58 231.1 173 67.1
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 1.1e-58 231.1 279 50.9
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 1.4e-58 230.7 270 52.2
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 1.4e-58 230.7 201 59.7
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 1.8e-58 230.3 156 75.0
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 3.1e-58 229.6 278 51.1
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 3.1e-58 229.6 278 51.1
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 4.0e-58 229.2 162 73.5
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 4.0e-58 229.2 280 50.7
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 2.6e-57 226.5 205 59.5
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 5.8e-57 225.3 200 59.5
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.4e-55 218.8 202 58.9
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 9.2e-55 218.0 170 65.9
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 2.1e-54 216.9 152 73.7
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 4.6e-54 215.7 154 70.8
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 5.1e-53 212.2 172 65.1
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 1.1e-52 211.1 179 65.4
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 5.6e-52 208.8 157 67.5
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 2.8e-51 206.5 198 59.6
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 1.8e-50 203.8 135 75.6
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.8e-50 203.8 198 55.6
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.8e-50 203.8 198 55.6
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 1.2e-49 201.1 182 60.4
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 2.6e-49 199.9 150 67.3
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 3.7e-48 196.1 192 55.7
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 6.0e-46 188.7 196 53.1
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.3e-45 187.6 146 65.8
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 6.6e-45 185.3 192 53.1
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 1.1e-44 184.5 143 64.3
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 5.6e-44 182.2 280 43.2
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 2.4e-42 176.8 172 58.7
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 5.2e-42 175.6 162 57.4
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 8.9e-42 174.9 127 67.7
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 3.4e-41 172.9 165 57.0
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 7.6e-41 171.8 169 57.4
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 1.2e-38 164.5 99 81.8
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 7.8e-38 161.8 108 75.0
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 3.4e-33 146.4 132 63.6
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 6.4e-32 142.1 130 61.5
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.1e-31 141.4 131 59.5
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 1.9e-31 140.6 133 58.6
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 9.3e-31 138.3 200 45.0
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 8.7e-29 131.7 136 51.5
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.1e-28 131.3 144 52.1
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.5e-28 131.0 190 45.8
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 2.9e-24 116.7 77 72.7
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 3.2e-23 113.2 71 80.3
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 6.2e-19 99.0 95 58.9
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 6.2e-19 99.0 95 58.9
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 8.1e-19 98.6 64 78.1
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 7.1e-15 85.5 63 61.9
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 2.7e-14 83.6 133 36.1
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 7.4e-12 75.5 101 38.6
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 1.1e-10 71.6 105 38.1
RcHm_v2.0_Chr5g0013451 Rosa chinensis HOM05D004550 ORTHO05D005340 1.7e-08 64.3 71 53.5


User provided reference genes

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